Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22100

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegS and NIAGMN_22100 are separated by 405 nucleotidesNIAGMN_22100 and yegQ are separated by 329 nucleotides NIAGMN_22095: yegS - lipid kinase YegS, at 4,355,957 to 4,356,856 yegS NIAGMN_22100: NIAGMN_22100 - Uncharacterized protein YegR, at 4,357,262 to 4,357,579 _22100 NIAGMN_22110: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 4,357,909 to 4,359,270 yegQ Position (kb) 4357 4358Strain fitness (log2 ratio) -1 0 1 2at 4356.351 kb on - strand, within yegSat 4356.367 kb on - strand, within yegSat 4356.782 kb on - strandat 4356.884 kb on - strandat 4356.885 kb on + strandat 4356.886 kb on - strandat 4357.048 kb on + strandat 4357.050 kb on + strandat 4357.737 kb on + strandat 4357.798 kb on - strandat 4357.798 kb on - strandat 4357.846 kb on - strandat 4357.915 kb on - strandat 4358.008 kb on - strandat 4358.076 kb on + strand, within yegQat 4358.211 kb on - strand, within yegQat 4358.244 kb on + strand, within yegQat 4358.353 kb on - strand, within yegQat 4358.353 kb on - strand, within yegQat 4358.381 kb on + strand, within yegQat 4358.518 kb on - strand, within yegQ

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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4,356,351 - yegS NIAGMN_22095 0.44 +0.1
4,356,367 - yegS NIAGMN_22095 0.46 +0.2
4,356,782 - +1.8
4,356,884 - +1.9
4,356,885 + -0.9
4,356,886 - -0.5
4,357,048 + +0.9
4,357,050 + +0.5
4,357,737 + -0.4
4,357,798 - -0.3
4,357,798 - +0.4
4,357,846 - +0.9
4,357,915 - -1.4
4,358,008 - -1.4
4,358,076 + yegQ NIAGMN_22110 0.12 -1.4
4,358,211 - yegQ NIAGMN_22110 0.22 +2.2
4,358,244 + yegQ NIAGMN_22110 0.25 +0.6
4,358,353 - yegQ NIAGMN_22110 0.33 +1.6
4,358,353 - yegQ NIAGMN_22110 0.33 -0.7
4,358,381 + yegQ NIAGMN_22110 0.35 -1.2
4,358,518 - yegQ NIAGMN_22110 0.45 -0.0

Or see this region's nucleotide sequence