Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_18785 and NIAGMN_18790 overlap by 4 nucleotides NIAGMN_18790 and NIAGMN_18795 are separated by 252 nucleotides NIAGMN_18795 and NIAGMN_18800 are separated by 90 nucleotides NIAGMN_18800 and NIAGMN_18815 are separated by 240 nucleotides
NIAGMN_18785: NIAGMN_18785 - Serine/threonine-protein phosphatase, at 3,712,626 to 3,713,291
_18785
NIAGMN_18790: NIAGMN_18790 - Antitermination protein Q, at 3,713,288 to 3,713,911
_18790
NIAGMN_18795: NIAGMN_18795 - Membrane protein, at 3,714,164 to 3,714,907
_18795
NIAGMN_18800: NIAGMN_18800 - hypothetical protein, at 3,714,998 to 3,715,327
_18800
NIAGMN_18815: NIAGMN_18815 - DUF1737 domain-containing protein, at 3,715,568 to 3,717,421
_18815
Position (kb)
3714
3715 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3713.439 kb on + strand, within NIAGMN_18790 at 3713.439 kb on + strand, within NIAGMN_18790 at 3713.440 kb on - strand, within NIAGMN_18790 at 3713.492 kb on + strand, within NIAGMN_18790 at 3713.493 kb on - strand, within NIAGMN_18790 at 3713.493 kb on - strand, within NIAGMN_18790 at 3713.493 kb on - strand, within NIAGMN_18790 at 3713.557 kb on + strand, within NIAGMN_18790 at 3713.571 kb on + strand, within NIAGMN_18790 at 3713.606 kb on + strand, within NIAGMN_18790 at 3713.674 kb on + strand, within NIAGMN_18790 at 3713.675 kb on - strand, within NIAGMN_18790 at 3713.676 kb on + strand, within NIAGMN_18790 at 3713.677 kb on - strand, within NIAGMN_18790 at 3713.700 kb on + strand, within NIAGMN_18790 at 3713.700 kb on + strand, within NIAGMN_18790 at 3713.728 kb on + strand, within NIAGMN_18790 at 3713.787 kb on + strand, within NIAGMN_18790 at 3713.938 kb on + strand at 3713.938 kb on + strand at 3713.939 kb on - strand at 3713.939 kb on - strand at 3713.939 kb on - strand at 3713.952 kb on + strand at 3714.006 kb on + strand at 3714.097 kb on - strand at 3714.100 kb on - strand at 3715.190 kb on + strand, within NIAGMN_18800 at 3715.486 kb on + strand at 3715.486 kb on + strand at 3715.541 kb on - strand at 3715.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 3,713,439 + NIAGMN_18790 0.24 -0.8 3,713,439 + NIAGMN_18790 0.24 +1.7 3,713,440 - NIAGMN_18790 0.24 +0.1 3,713,492 + NIAGMN_18790 0.33 -0.6 3,713,493 - NIAGMN_18790 0.33 +0.7 3,713,493 - NIAGMN_18790 0.33 -2.3 3,713,493 - NIAGMN_18790 0.33 +0.6 3,713,557 + NIAGMN_18790 0.43 +0.7 3,713,571 + NIAGMN_18790 0.45 -0.4 3,713,606 + NIAGMN_18790 0.51 -0.3 3,713,674 + NIAGMN_18790 0.62 -0.3 3,713,675 - NIAGMN_18790 0.62 -0.1 3,713,676 + NIAGMN_18790 0.62 -0.6 3,713,677 - NIAGMN_18790 0.62 +2.7 3,713,700 + NIAGMN_18790 0.66 +0.4 3,713,700 + NIAGMN_18790 0.66 +1.6 3,713,728 + NIAGMN_18790 0.71 +0.7 3,713,787 + NIAGMN_18790 0.80 -0.9 3,713,938 + -0.3 3,713,938 + -0.4 3,713,939 - -1.1 3,713,939 - -1.3 3,713,939 - -0.6 3,713,952 + +0.7 3,714,006 + -0.2 3,714,097 - +0.0 3,714,100 - +0.7 3,715,190 + NIAGMN_18800 0.58 -1.6 3,715,486 + +0.6 3,715,486 + -0.9 3,715,541 - -0.1 3,715,544 - -1.1
Or see this region's nucleotide sequence