Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18795

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18785 and NIAGMN_18790 overlap by 4 nucleotidesNIAGMN_18790 and NIAGMN_18795 are separated by 252 nucleotidesNIAGMN_18795 and NIAGMN_18800 are separated by 90 nucleotidesNIAGMN_18800 and NIAGMN_18815 are separated by 240 nucleotides NIAGMN_18785: NIAGMN_18785 - Serine/threonine-protein phosphatase, at 3,712,626 to 3,713,291 _18785 NIAGMN_18790: NIAGMN_18790 - Antitermination protein Q, at 3,713,288 to 3,713,911 _18790 NIAGMN_18795: NIAGMN_18795 - Membrane protein, at 3,714,164 to 3,714,907 _18795 NIAGMN_18800: NIAGMN_18800 - hypothetical protein, at 3,714,998 to 3,715,327 _18800 NIAGMN_18815: NIAGMN_18815 - DUF1737 domain-containing protein, at 3,715,568 to 3,717,421 _18815 Position (kb) 3714 3715Strain fitness (log2 ratio) -2 -1 0 1 2at 3713.439 kb on + strand, within NIAGMN_18790at 3713.439 kb on + strand, within NIAGMN_18790at 3713.440 kb on - strand, within NIAGMN_18790at 3713.492 kb on + strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.557 kb on + strand, within NIAGMN_18790at 3713.571 kb on + strand, within NIAGMN_18790at 3713.606 kb on + strand, within NIAGMN_18790at 3713.674 kb on + strand, within NIAGMN_18790at 3713.675 kb on - strand, within NIAGMN_18790at 3713.676 kb on + strand, within NIAGMN_18790at 3713.677 kb on - strand, within NIAGMN_18790at 3713.700 kb on + strand, within NIAGMN_18790at 3713.700 kb on + strand, within NIAGMN_18790at 3713.728 kb on + strand, within NIAGMN_18790at 3713.787 kb on + strand, within NIAGMN_18790at 3713.938 kb on + strandat 3713.938 kb on + strandat 3713.939 kb on - strandat 3713.939 kb on - strandat 3713.939 kb on - strandat 3713.952 kb on + strandat 3714.006 kb on + strandat 3714.097 kb on - strandat 3714.100 kb on - strandat 3715.190 kb on + strand, within NIAGMN_18800at 3715.486 kb on + strandat 3715.486 kb on + strandat 3715.541 kb on - strandat 3715.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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3,713,439 + NIAGMN_18790 0.24 -0.8
3,713,439 + NIAGMN_18790 0.24 +1.7
3,713,440 - NIAGMN_18790 0.24 +0.1
3,713,492 + NIAGMN_18790 0.33 -0.6
3,713,493 - NIAGMN_18790 0.33 +0.7
3,713,493 - NIAGMN_18790 0.33 -2.3
3,713,493 - NIAGMN_18790 0.33 +0.6
3,713,557 + NIAGMN_18790 0.43 +0.7
3,713,571 + NIAGMN_18790 0.45 -0.4
3,713,606 + NIAGMN_18790 0.51 -0.3
3,713,674 + NIAGMN_18790 0.62 -0.3
3,713,675 - NIAGMN_18790 0.62 -0.1
3,713,676 + NIAGMN_18790 0.62 -0.6
3,713,677 - NIAGMN_18790 0.62 +2.7
3,713,700 + NIAGMN_18790 0.66 +0.4
3,713,700 + NIAGMN_18790 0.66 +1.6
3,713,728 + NIAGMN_18790 0.71 +0.7
3,713,787 + NIAGMN_18790 0.80 -0.9
3,713,938 + -0.3
3,713,938 + -0.4
3,713,939 - -1.1
3,713,939 - -1.3
3,713,939 - -0.6
3,713,952 + +0.7
3,714,006 + -0.2
3,714,097 - +0.0
3,714,100 - +0.7
3,715,190 + NIAGMN_18800 0.58 -1.6
3,715,486 + +0.6
3,715,486 + -0.9
3,715,541 - -0.1
3,715,544 - -1.1

Or see this region's nucleotide sequence