Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaG and rpsU are separated by 110 nucleotides rpsU and tsaD are separated by 237 nucleotides tsaD and ttdT are separated by 42 nucleotides
NIAGMN_16425: dnaG - DNA primase, at 3,249,346 to 3,251,091
dnaG
NIAGMN_16430: rpsU - 30S ribosomal protein S21, at 3,251,202 to 3,251,417
rpsU
NIAGMN_16435: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 3,251,655 to 3,252,668
tsaD
NIAGMN_16440: ttdT - L-tartrate/succinate antiporter, at 3,252,711 to 3,254,174
ttdT
Position (kb)
3251
3252
3253 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3251.092 kb on - strand at 3251.116 kb on - strand at 3251.547 kb on + strand at 3251.548 kb on - strand at 3251.548 kb on - strand at 3251.550 kb on - strand at 3251.562 kb on + strand at 3251.562 kb on + strand at 3251.562 kb on + strand at 3251.562 kb on + strand at 3251.563 kb on - strand at 3251.564 kb on + strand at 3251.564 kb on + strand at 3251.565 kb on - strand at 3251.565 kb on - strand at 3251.565 kb on - strand at 3251.565 kb on - strand at 3251.598 kb on + strand at 3251.598 kb on + strand at 3251.619 kb on + strand at 3251.631 kb on + strand at 3252.667 kb on - strand at 3252.673 kb on - strand at 3252.691 kb on - strand at 3252.691 kb on - strand at 3252.691 kb on - strand at 3252.691 kb on - strand at 3252.708 kb on + strand at 3252.708 kb on + strand at 3252.708 kb on + strand at 3252.709 kb on - strand at 3252.712 kb on + strand at 3252.713 kb on - strand at 3252.713 kb on - strand at 3252.713 kb on - strand at 3252.738 kb on + strand at 3252.738 kb on + strand at 3252.769 kb on - strand at 3252.800 kb on - strand at 3252.830 kb on - strand at 3252.832 kb on + strand at 3252.833 kb on - strand at 3252.833 kb on - strand at 3252.856 kb on + strand at 3252.856 kb on + strand at 3252.856 kb on + strand at 3252.857 kb on - strand at 3252.857 kb on - strand at 3252.857 kb on - strand at 3252.863 kb on + strand, within ttdT at 3252.863 kb on + strand, within ttdT at 3252.864 kb on - strand, within ttdT at 3252.864 kb on - strand, within ttdT at 3252.975 kb on - strand, within ttdT at 3252.976 kb on + strand, within ttdT at 3252.976 kb on + strand, within ttdT at 3252.976 kb on + strand, within ttdT at 3252.977 kb on - strand, within ttdT at 3252.977 kb on - strand, within ttdT at 3253.009 kb on - strand, within ttdT at 3253.012 kb on + strand, within ttdT at 3253.013 kb on - strand, within ttdT at 3253.062 kb on + strand, within ttdT at 3253.062 kb on + strand, within ttdT at 3253.095 kb on - strand, within ttdT at 3253.095 kb on - strand, within ttdT at 3253.095 kb on - strand, within ttdT at 3253.095 kb on - strand, within ttdT at 3253.097 kb on + strand, within ttdT at 3253.097 kb on + strand, within ttdT at 3253.098 kb on - strand, within ttdT at 3253.172 kb on + strand, within ttdT at 3253.176 kb on - strand, within ttdT at 3253.258 kb on + strand, within ttdT at 3253.258 kb on + strand, within ttdT at 3253.258 kb on + strand, within ttdT at 3253.258 kb on + strand, within ttdT at 3253.258 kb on + strand, within ttdT at 3253.259 kb on - strand, within ttdT at 3253.259 kb on - strand, within ttdT at 3253.293 kb on + strand, within ttdT at 3253.293 kb on + strand, within ttdT at 3253.411 kb on + strand, within ttdT at 3253.412 kb on - strand, within ttdT at 3253.412 kb on - strand, within ttdT at 3253.440 kb on + strand, within ttdT at 3253.440 kb on + strand, within ttdT at 3253.446 kb on - strand, within ttdT at 3253.446 kb on - strand, within ttdT at 3253.522 kb on - strand, within ttdT at 3253.533 kb on - strand, within ttdT at 3253.600 kb on + strand, within ttdT at 3253.600 kb on + strand, within ttdT at 3253.600 kb on + strand, within ttdT at 3253.601 kb on - strand, within ttdT at 3253.601 kb on - strand, within ttdT at 3253.601 kb on - strand, within ttdT at 3253.645 kb on + strand, within ttdT at 3253.645 kb on + strand, within ttdT at 3253.645 kb on + strand, within ttdT at 3253.646 kb on - strand, within ttdT
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 3,251,092 - -0.0 3,251,116 - -0.3 3,251,547 + -0.8 3,251,548 - +0.6 3,251,548 - +0.8 3,251,550 - -0.1 3,251,562 + -1.0 3,251,562 + +0.6 3,251,562 + +0.1 3,251,562 + +0.0 3,251,563 - +0.8 3,251,564 + -0.5 3,251,564 + -0.1 3,251,565 - +0.4 3,251,565 - -0.0 3,251,565 - -0.6 3,251,565 - -0.1 3,251,598 + -0.1 3,251,598 + +0.0 3,251,619 + +0.6 3,251,631 + +0.0 3,252,667 - +0.8 3,252,673 - -1.1 3,252,691 - -0.6 3,252,691 - -0.3 3,252,691 - +1.4 3,252,691 - +0.0 3,252,708 + +0.2 3,252,708 + -0.2 3,252,708 + +0.2 3,252,709 - -0.7 3,252,712 + -0.9 3,252,713 - +0.2 3,252,713 - +0.1 3,252,713 - -0.2 3,252,738 + -0.5 3,252,738 + -0.8 3,252,769 - -1.4 3,252,800 - +0.9 3,252,830 - +0.2 3,252,832 + -0.2 3,252,833 - -0.6 3,252,833 - +0.1 3,252,856 + -0.7 3,252,856 + +0.7 3,252,856 + -0.6 3,252,857 - -0.1 3,252,857 - +0.3 3,252,857 - -1.0 3,252,863 + ttdT NIAGMN_16440 0.10 +1.4 3,252,863 + ttdT NIAGMN_16440 0.10 +0.7 3,252,864 - ttdT NIAGMN_16440 0.10 -0.5 3,252,864 - ttdT NIAGMN_16440 0.10 +2.1 3,252,975 - ttdT NIAGMN_16440 0.18 -0.5 3,252,976 + ttdT NIAGMN_16440 0.18 -0.2 3,252,976 + ttdT NIAGMN_16440 0.18 -0.6 3,252,976 + ttdT NIAGMN_16440 0.18 -0.8 3,252,977 - ttdT NIAGMN_16440 0.18 +0.8 3,252,977 - ttdT NIAGMN_16440 0.18 -0.1 3,253,009 - ttdT NIAGMN_16440 0.20 -0.2 3,253,012 + ttdT NIAGMN_16440 0.21 +0.4 3,253,013 - ttdT NIAGMN_16440 0.21 -0.8 3,253,062 + ttdT NIAGMN_16440 0.24 -1.8 3,253,062 + ttdT NIAGMN_16440 0.24 +0.2 3,253,095 - ttdT NIAGMN_16440 0.26 -1.0 3,253,095 - ttdT NIAGMN_16440 0.26 -0.2 3,253,095 - ttdT NIAGMN_16440 0.26 -0.7 3,253,095 - ttdT NIAGMN_16440 0.26 -1.4 3,253,097 + ttdT NIAGMN_16440 0.26 -1.1 3,253,097 + ttdT NIAGMN_16440 0.26 +0.4 3,253,098 - ttdT NIAGMN_16440 0.26 +0.1 3,253,172 + ttdT NIAGMN_16440 0.31 -1.2 3,253,176 - ttdT NIAGMN_16440 0.32 -2.1 3,253,258 + ttdT NIAGMN_16440 0.37 -0.3 3,253,258 + ttdT NIAGMN_16440 0.37 +0.8 3,253,258 + ttdT NIAGMN_16440 0.37 +0.1 3,253,258 + ttdT NIAGMN_16440 0.37 +0.1 3,253,258 + ttdT NIAGMN_16440 0.37 +0.2 3,253,259 - ttdT NIAGMN_16440 0.37 -0.2 3,253,259 - ttdT NIAGMN_16440 0.37 +0.2 3,253,293 + ttdT NIAGMN_16440 0.40 -0.8 3,253,293 + ttdT NIAGMN_16440 0.40 -0.3 3,253,411 + ttdT NIAGMN_16440 0.48 -0.2 3,253,412 - ttdT NIAGMN_16440 0.48 +0.5 3,253,412 - ttdT NIAGMN_16440 0.48 -0.5 3,253,440 + ttdT NIAGMN_16440 0.50 +1.2 3,253,440 + ttdT NIAGMN_16440 0.50 +0.0 3,253,446 - ttdT NIAGMN_16440 0.50 -0.0 3,253,446 - ttdT NIAGMN_16440 0.50 -0.9 3,253,522 - ttdT NIAGMN_16440 0.55 +0.2 3,253,533 - ttdT NIAGMN_16440 0.56 +0.9 3,253,600 + ttdT NIAGMN_16440 0.61 -0.6 3,253,600 + ttdT NIAGMN_16440 0.61 -1.4 3,253,600 + ttdT NIAGMN_16440 0.61 +1.0 3,253,601 - ttdT NIAGMN_16440 0.61 -0.7 3,253,601 - ttdT NIAGMN_16440 0.61 -0.3 3,253,601 - ttdT NIAGMN_16440 0.61 +0.8 3,253,645 + ttdT NIAGMN_16440 0.64 +0.2 3,253,645 + ttdT NIAGMN_16440 0.64 -0.3 3,253,645 + ttdT NIAGMN_16440 0.64 -1.7 3,253,646 - ttdT NIAGMN_16440 0.64 +0.3
Or see this region's nucleotide sequence