Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13770

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthokA and cspA are separated by 187 nucleotidescspA and yiaG are separated by 280 nucleotidesyiaG and yiaF are separated by 433 nucleotides NIAGMN_13760: hokA - type I toxin-antitoxin system toxin HokA, at 2,733,497 to 2,733,709 hokA NIAGMN_13765: cspA - Major cold shock protein, at 2,733,897 to 2,734,109 cspA NIAGMN_13770: yiaG - HTH-type transcriptional regulator, at 2,734,390 to 2,734,680 yiaG NIAGMN_13775: yiaF - Uncharacterized protein YiaF, at 2,735,114 to 2,735,824 yiaF Position (kb) 2734 2735Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2733.392 kb on - strandat 2733.475 kb on + strandat 2733.476 kb on - strandat 2733.496 kb on + strandat 2733.496 kb on + strandat 2733.497 kb on - strandat 2733.497 kb on - strandat 2733.497 kb on - strandat 2733.500 kb on + strandat 2733.500 kb on + strandat 2733.501 kb on - strandat 2733.501 kb on - strandat 2733.501 kb on - strandat 2733.503 kb on - strandat 2733.503 kb on - strandat 2733.512 kb on - strandat 2733.512 kb on - strandat 2733.526 kb on - strand, within hokAat 2733.819 kb on + strandat 2733.888 kb on - strandat 2733.899 kb on - strandat 2733.910 kb on - strandat 2734.015 kb on - strand, within cspAat 2734.109 kb on + strandat 2734.109 kb on + strandat 2734.109 kb on + strandat 2734.109 kb on + strandat 2734.109 kb on + strandat 2734.109 kb on + strandat 2734.110 kb on - strandat 2734.110 kb on - strandat 2734.110 kb on - strandat 2734.110 kb on - strandat 2734.110 kb on - strandat 2734.110 kb on - strandat 2734.114 kb on + strandat 2734.114 kb on + strandat 2734.114 kb on + strandat 2734.114 kb on + strandat 2734.114 kb on + strandat 2734.115 kb on - strandat 2734.115 kb on - strandat 2734.115 kb on - strandat 2734.115 kb on - strandat 2734.117 kb on + strandat 2734.117 kb on + strandat 2734.118 kb on - strandat 2734.127 kb on - strandat 2734.127 kb on - strandat 2734.130 kb on + strandat 2734.130 kb on + strandat 2734.130 kb on + strandat 2734.130 kb on + strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.131 kb on - strandat 2734.234 kb on - strandat 2734.237 kb on - strandat 2734.237 kb on - strandat 2734.237 kb on - strandat 2734.237 kb on - strandat 2734.257 kb on - strandat 2734.257 kb on - strandat 2734.257 kb on - strandat 2734.257 kb on - strandat 2734.310 kb on + strandat 2734.311 kb on - strandat 2734.311 kb on - strandat 2734.323 kb on + strandat 2734.324 kb on - strandat 2734.492 kb on + strand, within yiaGat 2734.492 kb on + strand, within yiaGat 2734.492 kb on + strand, within yiaGat 2734.493 kb on - strand, within yiaGat 2734.508 kb on - strand, within yiaGat 2734.508 kb on - strand, within yiaGat 2734.558 kb on + strand, within yiaGat 2734.603 kb on - strand, within yiaGat 2734.671 kb on + strandat 2734.672 kb on - strandat 2734.672 kb on - strandat 2734.674 kb on - strandat 2734.674 kb on - strandat 2734.732 kb on + strandat 2734.738 kb on + strandat 2734.738 kb on + strandat 2734.788 kb on - strandat 2734.788 kb on - strandat 2734.811 kb on + strandat 2734.811 kb on + strandat 2734.821 kb on + strandat 2734.822 kb on - strandat 2734.822 kb on - strandat 2734.822 kb on - strandat 2734.831 kb on + strandat 2734.832 kb on - strandat 2734.842 kb on + strandat 2734.843 kb on - strandat 2734.852 kb on + strandat 2734.852 kb on + strandat 2734.852 kb on + strandat 2734.852 kb on + strandat 2734.852 kb on + strandat 2734.852 kb on + strandat 2734.853 kb on - strandat 2734.853 kb on - strandat 2734.853 kb on - strandat 2734.853 kb on - strandat 2734.854 kb on + strandat 2734.855 kb on - strandat 2734.855 kb on - strandat 2734.855 kb on - strandat 2734.860 kb on + strandat 2734.861 kb on - strandat 2734.894 kb on + strandat 2735.001 kb on + strandat 2735.013 kb on + strandat 2735.014 kb on - strandat 2735.014 kb on - strandat 2735.017 kb on + strandat 2735.017 kb on + strandat 2735.017 kb on + strandat 2735.017 kb on + strandat 2735.018 kb on - strandat 2735.018 kb on - strandat 2735.018 kb on - strandat 2735.163 kb on + strandat 2735.166 kb on + strandat 2735.166 kb on + strandat 2735.172 kb on + strandat 2735.172 kb on + strandat 2735.172 kb on + strandat 2735.173 kb on - strandat 2735.173 kb on - strandat 2735.176 kb on + strandat 2735.177 kb on - strandat 2735.215 kb on + strand, within yiaFat 2735.215 kb on + strand, within yiaFat 2735.242 kb on + strand, within yiaFat 2735.242 kb on + strand, within yiaFat 2735.242 kb on + strand, within yiaFat 2735.243 kb on - strand, within yiaFat 2735.339 kb on + strand, within yiaFat 2735.388 kb on + strand, within yiaFat 2735.388 kb on + strand, within yiaFat 2735.388 kb on + strand, within yiaFat 2735.423 kb on + strand, within yiaFat 2735.423 kb on + strand, within yiaFat 2735.424 kb on - strand, within yiaFat 2735.583 kb on + strand, within yiaFat 2735.663 kb on + strand, within yiaFat 2735.663 kb on + strand, within yiaFat 2735.664 kb on - strand, within yiaFat 2735.664 kb on - strand, within yiaFat 2735.664 kb on - strand, within yiaFat 2735.664 kb on - strand, within yiaFat 2735.664 kb on - strand, within yiaF

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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2,733,392 - +0.1
2,733,475 + +2.7
2,733,476 - -1.1
2,733,496 + -1.7
2,733,496 + -1.1
2,733,497 - +0.2
2,733,497 - -0.0
2,733,497 - -0.1
2,733,500 + -0.3
2,733,500 + +0.1
2,733,501 - +0.3
2,733,501 - -0.8
2,733,501 - -0.1
2,733,503 - -1.9
2,733,503 - +0.7
2,733,512 - -0.1
2,733,512 - -0.4
2,733,526 - hokA NIAGMN_13760 0.14 +0.3
2,733,819 + +0.6
2,733,888 - -1.7
2,733,899 - -0.5
2,733,910 - +0.3
2,734,015 - cspA NIAGMN_13765 0.55 +0.5
2,734,109 + +0.7
2,734,109 + -0.3
2,734,109 + -1.0
2,734,109 + +0.4
2,734,109 + -0.0
2,734,109 + -0.4
2,734,110 - -1.0
2,734,110 - -1.0
2,734,110 - -0.3
2,734,110 - +0.3
2,734,110 - +0.0
2,734,110 - +0.6
2,734,114 + +1.7
2,734,114 + -0.1
2,734,114 + +0.4
2,734,114 + +0.3
2,734,114 + +0.1
2,734,115 - -0.4
2,734,115 - -1.5
2,734,115 - -0.9
2,734,115 - -0.4
2,734,117 + -0.0
2,734,117 + +0.1
2,734,118 - +0.5
2,734,127 - +0.6
2,734,127 - -0.7
2,734,130 + +0.0
2,734,130 + +2.7
2,734,130 + -1.5
2,734,130 + +0.5
2,734,131 - +1.8
2,734,131 - +1.1
2,734,131 - -0.3
2,734,131 - +0.5
2,734,131 - -0.3
2,734,131 - -0.5
2,734,131 - -1.0
2,734,131 - -0.3
2,734,131 - -0.2
2,734,234 - +0.1
2,734,237 - -0.6
2,734,237 - +0.3
2,734,237 - +0.1
2,734,237 - -1.0
2,734,257 - -0.2
2,734,257 - +0.2
2,734,257 - +2.1
2,734,257 - -1.1
2,734,310 + -1.3
2,734,311 - +0.5
2,734,311 - -0.1
2,734,323 + -0.6
2,734,324 - +0.7
2,734,492 + yiaG NIAGMN_13770 0.35 -0.8
2,734,492 + yiaG NIAGMN_13770 0.35 +0.0
2,734,492 + yiaG NIAGMN_13770 0.35 -1.5
2,734,493 - yiaG NIAGMN_13770 0.35 +0.1
2,734,508 - yiaG NIAGMN_13770 0.41 +1.7
2,734,508 - yiaG NIAGMN_13770 0.41 -0.9
2,734,558 + yiaG NIAGMN_13770 0.58 -0.0
2,734,603 - yiaG NIAGMN_13770 0.73 -1.3
2,734,671 + +0.2
2,734,672 - -0.9
2,734,672 - -0.2
2,734,674 - -0.4
2,734,674 - +0.2
2,734,732 + +0.8
2,734,738 + +1.0
2,734,738 + +0.1
2,734,788 - +2.9
2,734,788 - -1.5
2,734,811 + +0.8
2,734,811 + -0.9
2,734,821 + -0.9
2,734,822 - -0.6
2,734,822 - +0.5
2,734,822 - -0.1
2,734,831 + +0.1
2,734,832 - -0.3
2,734,842 + -1.9
2,734,843 - +0.7
2,734,852 + -0.9
2,734,852 + -0.7
2,734,852 + -0.4
2,734,852 + +0.5
2,734,852 + -0.8
2,734,852 + +1.1
2,734,853 - -1.0
2,734,853 - -0.2
2,734,853 - -0.2
2,734,853 - -1.5
2,734,854 + +1.1
2,734,855 - -0.6
2,734,855 - -0.2
2,734,855 - -0.0
2,734,860 + -0.1
2,734,861 - +0.1
2,734,894 + -0.5
2,735,001 + -1.6
2,735,013 + -0.1
2,735,014 - +0.1
2,735,014 - +1.1
2,735,017 + +0.3
2,735,017 + -0.5
2,735,017 + -0.8
2,735,017 + -0.6
2,735,018 - -0.9
2,735,018 - -0.6
2,735,018 - +0.4
2,735,163 + -1.2
2,735,166 + -0.1
2,735,166 + -0.6
2,735,172 + -1.0
2,735,172 + +0.8
2,735,172 + +0.7
2,735,173 - -0.3
2,735,173 - +0.1
2,735,176 + -1.2
2,735,177 - -0.3
2,735,215 + yiaF NIAGMN_13775 0.14 +0.4
2,735,215 + yiaF NIAGMN_13775 0.14 +0.7
2,735,242 + yiaF NIAGMN_13775 0.18 -0.6
2,735,242 + yiaF NIAGMN_13775 0.18 +0.7
2,735,242 + yiaF NIAGMN_13775 0.18 +0.7
2,735,243 - yiaF NIAGMN_13775 0.18 +1.1
2,735,339 + yiaF NIAGMN_13775 0.32 +1.3
2,735,388 + yiaF NIAGMN_13775 0.39 -0.5
2,735,388 + yiaF NIAGMN_13775 0.39 -0.0
2,735,388 + yiaF NIAGMN_13775 0.39 -0.2
2,735,423 + yiaF NIAGMN_13775 0.43 -0.5
2,735,423 + yiaF NIAGMN_13775 0.43 -0.1
2,735,424 - yiaF NIAGMN_13775 0.44 -1.6
2,735,583 + yiaF NIAGMN_13775 0.66 -0.4
2,735,663 + yiaF NIAGMN_13775 0.77 -0.3
2,735,663 + yiaF NIAGMN_13775 0.77 +0.5
2,735,664 - yiaF NIAGMN_13775 0.77 -0.9
2,735,664 - yiaF NIAGMN_13775 0.77 +1.5
2,735,664 - yiaF NIAGMN_13775 0.77 -0.3
2,735,664 - yiaF NIAGMN_13775 0.77 +1.2
2,735,664 - yiaF NIAGMN_13775 0.77 -0.8

Or see this region's nucleotide sequence