Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11065

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurH and purD are separated by 11 nucleotidespurD and zraR overlap by 4 nucleotides NIAGMN_11060: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 2,185,388 to 2,186,977 purH NIAGMN_11065: purD - Phosphoribosylamine--glycine ligase, at 2,186,989 to 2,188,278 purD NIAGMN_11070: zraR - sigma-54-dependent response regulator transcription factor ZraR, at 2,188,275 to 2,189,600 zraR Position (kb) 2186 2187 2188 2189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2186.050 kb on + strand, within purHat 2186.100 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.102 kb on + strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.103 kb on - strand, within purHat 2186.104 kb on + strand, within purHat 2186.104 kb on + strand, within purHat 2186.104 kb on + strand, within purHat 2186.105 kb on - strand, within purHat 2186.105 kb on - strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.106 kb on + strand, within purHat 2186.107 kb on - strand, within purHat 2186.107 kb on - strand, within purHat 2186.107 kb on - strand, within purHat 2186.107 kb on - strand, within purHat 2186.159 kb on - strand, within purHat 2186.171 kb on + strand, within purHat 2186.171 kb on + strand, within purHat 2186.171 kb on + strand, within purHat 2186.171 kb on + strand, within purHat 2186.172 kb on - strand, within purHat 2186.172 kb on - strand, within purHat 2186.172 kb on - strand, within purHat 2186.172 kb on - strand, within purHat 2186.173 kb on + strand, within purHat 2186.173 kb on + strand, within purHat 2186.173 kb on + strand, within purHat 2186.173 kb on + strand, within purHat 2186.173 kb on + strand, within purHat 2186.173 kb on + strand, within purHat 2186.173 kb on + strand, within purHat 2186.174 kb on - strand, within purHat 2186.174 kb on - strand, within purHat 2186.174 kb on - strand, within purHat 2186.174 kb on - strand, within purHat 2186.174 kb on - strand, within purHat 2186.174 kb on - strand, within purHat 2186.297 kb on + strand, within purHat 2186.310 kb on - strand, within purHat 2186.417 kb on - strand, within purHat 2186.472 kb on + strand, within purHat 2186.472 kb on + strand, within purHat 2186.473 kb on - strand, within purHat 2186.681 kb on - strand, within purHat 2186.688 kb on - strand, within purHat 2186.688 kb on - strand, within purHat 2186.741 kb on + strand, within purHat 2186.742 kb on - strand, within purHat 2186.764 kb on + strand, within purHat 2186.764 kb on + strand, within purHat 2186.765 kb on - strand, within purHat 2186.875 kb on - strandat 2186.875 kb on - strandat 2186.875 kb on - strandat 2186.996 kb on + strandat 2186.996 kb on + strandat 2186.996 kb on + strandat 2186.996 kb on + strandat 2186.996 kb on + strandat 2186.996 kb on + strandat 2186.997 kb on - strandat 2186.997 kb on - strandat 2186.997 kb on - strandat 2186.997 kb on - strandat 2187.183 kb on - strand, within purDat 2187.188 kb on + strand, within purDat 2187.188 kb on + strand, within purDat 2187.189 kb on - strand, within purDat 2187.189 kb on - strand, within purDat 2187.189 kb on - strand, within purDat 2187.189 kb on - strand, within purDat 2187.310 kb on - strand, within purDat 2187.312 kb on + strand, within purDat 2187.312 kb on + strand, within purDat 2187.342 kb on + strand, within purDat 2187.371 kb on + strand, within purDat 2187.371 kb on + strand, within purDat 2187.388 kb on + strand, within purDat 2187.420 kb on + strand, within purDat 2187.421 kb on - strand, within purDat 2187.421 kb on - strand, within purDat 2187.498 kb on + strand, within purDat 2187.498 kb on + strand, within purDat 2187.498 kb on + strand, within purDat 2187.499 kb on - strand, within purDat 2187.738 kb on + strand, within purDat 2187.738 kb on + strand, within purDat 2187.738 kb on + strand, within purDat 2187.738 kb on + strand, within purDat 2187.739 kb on - strand, within purDat 2187.739 kb on - strand, within purDat 2187.739 kb on - strand, within purDat 2187.784 kb on + strand, within purDat 2187.784 kb on + strand, within purDat 2187.785 kb on - strand, within purDat 2187.785 kb on - strand, within purDat 2187.785 kb on - strand, within purDat 2187.800 kb on - strand, within purDat 2187.849 kb on + strand, within purDat 2187.849 kb on + strand, within purDat 2187.886 kb on - strand, within purDat 2187.886 kb on - strand, within purDat 2187.886 kb on - strand, within purDat 2187.944 kb on + strand, within purDat 2187.944 kb on + strand, within purDat 2187.944 kb on + strand, within purDat 2187.945 kb on - strand, within purDat 2187.945 kb on - strand, within purDat 2188.022 kb on - strand, within purDat 2188.121 kb on + strand, within purDat 2188.139 kb on + strand, within purDat 2188.164 kb on + strandat 2188.164 kb on + strandat 2188.165 kb on - strandat 2188.193 kb on - strandat 2188.199 kb on + strandat 2188.276 kb on + strandat 2188.276 kb on + strandat 2188.277 kb on - strandat 2188.317 kb on + strandat 2188.318 kb on - strandat 2188.318 kb on - strandat 2188.318 kb on - strandat 2188.318 kb on - strandat 2188.406 kb on + strandat 2188.436 kb on + strand, within zraRat 2188.436 kb on + strand, within zraRat 2188.437 kb on - strand, within zraRat 2188.472 kb on + strand, within zraRat 2188.473 kb on - strand, within zraRat 2188.473 kb on - strand, within zraRat 2188.473 kb on - strand, within zraRat 2188.474 kb on + strand, within zraRat 2188.474 kb on + strand, within zraRat 2188.475 kb on - strand, within zraRat 2188.529 kb on + strand, within zraRat 2188.602 kb on - strand, within zraRat 2188.602 kb on - strand, within zraRat 2188.647 kb on - strand, within zraRat 2188.674 kb on + strand, within zraRat 2188.674 kb on + strand, within zraRat 2188.675 kb on - strand, within zraRat 2188.675 kb on - strand, within zraRat 2188.675 kb on - strand, within zraRat 2188.675 kb on - strand, within zraRat 2188.705 kb on + strand, within zraRat 2188.706 kb on - strand, within zraRat 2188.790 kb on + strand, within zraRat 2188.791 kb on - strand, within zraRat 2188.947 kb on - strand, within zraRat 2189.020 kb on - strand, within zraRat 2189.036 kb on + strand, within zraRat 2189.037 kb on - strand, within zraRat 2189.079 kb on - strand, within zraRat 2189.222 kb on + strand, within zraRat 2189.222 kb on + strand, within zraRat 2189.222 kb on + strand, within zraRat 2189.223 kb on - strand, within zraR

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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2,186,050 + purH NIAGMN_11060 0.42 -0.1
2,186,100 + purH NIAGMN_11060 0.45 -0.4
2,186,102 + purH NIAGMN_11060 0.45 -0.5
2,186,102 + purH NIAGMN_11060 0.45 -0.6
2,186,102 + purH NIAGMN_11060 0.45 +0.1
2,186,102 + purH NIAGMN_11060 0.45 -0.0
2,186,102 + purH NIAGMN_11060 0.45 +0.7
2,186,102 + purH NIAGMN_11060 0.45 -0.8
2,186,102 + purH NIAGMN_11060 0.45 +0.3
2,186,102 + purH NIAGMN_11060 0.45 -1.3
2,186,102 + purH NIAGMN_11060 0.45 -0.7
2,186,102 + purH NIAGMN_11060 0.45 -0.5
2,186,102 + purH NIAGMN_11060 0.45 -1.1
2,186,102 + purH NIAGMN_11060 0.45 -0.8
2,186,103 - purH NIAGMN_11060 0.45 -0.0
2,186,103 - purH NIAGMN_11060 0.45 +0.3
2,186,103 - purH NIAGMN_11060 0.45 +0.4
2,186,103 - purH NIAGMN_11060 0.45 +1.7
2,186,103 - purH NIAGMN_11060 0.45 +1.5
2,186,103 - purH NIAGMN_11060 0.45 +0.3
2,186,103 - purH NIAGMN_11060 0.45 -0.3
2,186,103 - purH NIAGMN_11060 0.45 +0.1
2,186,104 + purH NIAGMN_11060 0.45 -0.3
2,186,104 + purH NIAGMN_11060 0.45 -1.2
2,186,104 + purH NIAGMN_11060 0.45 -0.1
2,186,105 - purH NIAGMN_11060 0.45 +1.3
2,186,105 - purH NIAGMN_11060 0.45 +0.3
2,186,106 + purH NIAGMN_11060 0.45 +0.7
2,186,106 + purH NIAGMN_11060 0.45 -0.6
2,186,106 + purH NIAGMN_11060 0.45 -0.5
2,186,106 + purH NIAGMN_11060 0.45 -0.6
2,186,106 + purH NIAGMN_11060 0.45 +0.1
2,186,106 + purH NIAGMN_11060 0.45 +0.1
2,186,106 + purH NIAGMN_11060 0.45 -0.7
2,186,106 + purH NIAGMN_11060 0.45 +0.1
2,186,107 - purH NIAGMN_11060 0.45 +1.1
2,186,107 - purH NIAGMN_11060 0.45 -0.5
2,186,107 - purH NIAGMN_11060 0.45 +0.1
2,186,107 - purH NIAGMN_11060 0.45 -0.3
2,186,159 - purH NIAGMN_11060 0.48 +0.3
2,186,171 + purH NIAGMN_11060 0.49 +0.8
2,186,171 + purH NIAGMN_11060 0.49 -0.0
2,186,171 + purH NIAGMN_11060 0.49 +0.0
2,186,171 + purH NIAGMN_11060 0.49 +0.1
2,186,172 - purH NIAGMN_11060 0.49 -0.0
2,186,172 - purH NIAGMN_11060 0.49 -0.3
2,186,172 - purH NIAGMN_11060 0.49 -0.5
2,186,172 - purH NIAGMN_11060 0.49 -0.1
2,186,173 + purH NIAGMN_11060 0.49 -0.0
2,186,173 + purH NIAGMN_11060 0.49 -0.3
2,186,173 + purH NIAGMN_11060 0.49 -0.5
2,186,173 + purH NIAGMN_11060 0.49 -0.0
2,186,173 + purH NIAGMN_11060 0.49 -0.9
2,186,173 + purH NIAGMN_11060 0.49 +0.2
2,186,173 + purH NIAGMN_11060 0.49 -0.7
2,186,174 - purH NIAGMN_11060 0.49 -1.2
2,186,174 - purH NIAGMN_11060 0.49 -2.1
2,186,174 - purH NIAGMN_11060 0.49 -0.1
2,186,174 - purH NIAGMN_11060 0.49 -0.9
2,186,174 - purH NIAGMN_11060 0.49 -1.9
2,186,174 - purH NIAGMN_11060 0.49 -0.9
2,186,297 + purH NIAGMN_11060 0.57 -0.9
2,186,310 - purH NIAGMN_11060 0.58 -0.9
2,186,417 - purH NIAGMN_11060 0.65 -0.7
2,186,472 + purH NIAGMN_11060 0.68 +0.5
2,186,472 + purH NIAGMN_11060 0.68 -3.1
2,186,473 - purH NIAGMN_11060 0.68 -1.8
2,186,681 - purH NIAGMN_11060 0.81 -1.5
2,186,688 - purH NIAGMN_11060 0.82 +0.3
2,186,688 - purH NIAGMN_11060 0.82 -0.2
2,186,741 + purH NIAGMN_11060 0.85 +0.5
2,186,742 - purH NIAGMN_11060 0.85 -1.3
2,186,764 + purH NIAGMN_11060 0.87 -1.1
2,186,764 + purH NIAGMN_11060 0.87 +0.7
2,186,765 - purH NIAGMN_11060 0.87 -0.0
2,186,875 - +2.7
2,186,875 - -1.3
2,186,875 - -0.3
2,186,996 + +0.3
2,186,996 + +1.7
2,186,996 + -1.3
2,186,996 + -0.5
2,186,996 + -0.3
2,186,996 + -1.5
2,186,997 - +0.3
2,186,997 - -1.3
2,186,997 - -1.9
2,186,997 - -1.2
2,187,183 - purD NIAGMN_11065 0.15 -0.2
2,187,188 + purD NIAGMN_11065 0.15 +0.4
2,187,188 + purD NIAGMN_11065 0.15 -0.0
2,187,189 - purD NIAGMN_11065 0.16 -0.7
2,187,189 - purD NIAGMN_11065 0.16 +2.7
2,187,189 - purD NIAGMN_11065 0.16 -0.2
2,187,189 - purD NIAGMN_11065 0.16 +0.1
2,187,310 - purD NIAGMN_11065 0.25 +0.0
2,187,312 + purD NIAGMN_11065 0.25 +0.7
2,187,312 + purD NIAGMN_11065 0.25 -0.7
2,187,342 + purD NIAGMN_11065 0.27 +0.1
2,187,371 + purD NIAGMN_11065 0.30 -0.3
2,187,371 + purD NIAGMN_11065 0.30 -0.3
2,187,388 + purD NIAGMN_11065 0.31 +0.2
2,187,420 + purD NIAGMN_11065 0.33 -1.3
2,187,421 - purD NIAGMN_11065 0.33 +0.5
2,187,421 - purD NIAGMN_11065 0.33 -0.3
2,187,498 + purD NIAGMN_11065 0.39 -0.2
2,187,498 + purD NIAGMN_11065 0.39 +0.9
2,187,498 + purD NIAGMN_11065 0.39 +0.6
2,187,499 - purD NIAGMN_11065 0.40 -0.9
2,187,738 + purD NIAGMN_11065 0.58 -0.2
2,187,738 + purD NIAGMN_11065 0.58 +0.9
2,187,738 + purD NIAGMN_11065 0.58 +0.7
2,187,738 + purD NIAGMN_11065 0.58 +0.7
2,187,739 - purD NIAGMN_11065 0.58 +0.3
2,187,739 - purD NIAGMN_11065 0.58 -2.6
2,187,739 - purD NIAGMN_11065 0.58 +0.5
2,187,784 + purD NIAGMN_11065 0.62 -0.4
2,187,784 + purD NIAGMN_11065 0.62 -0.2
2,187,785 - purD NIAGMN_11065 0.62 -0.3
2,187,785 - purD NIAGMN_11065 0.62 +0.0
2,187,785 - purD NIAGMN_11065 0.62 +0.7
2,187,800 - purD NIAGMN_11065 0.63 +0.2
2,187,849 + purD NIAGMN_11065 0.67 +0.3
2,187,849 + purD NIAGMN_11065 0.67 +0.1
2,187,886 - purD NIAGMN_11065 0.70 -0.1
2,187,886 - purD NIAGMN_11065 0.70 +0.1
2,187,886 - purD NIAGMN_11065 0.70 +0.7
2,187,944 + purD NIAGMN_11065 0.74 +0.1
2,187,944 + purD NIAGMN_11065 0.74 -0.5
2,187,944 + purD NIAGMN_11065 0.74 -1.1
2,187,945 - purD NIAGMN_11065 0.74 +1.7
2,187,945 - purD NIAGMN_11065 0.74 -1.4
2,188,022 - purD NIAGMN_11065 0.80 -0.2
2,188,121 + purD NIAGMN_11065 0.88 +0.7
2,188,139 + purD NIAGMN_11065 0.89 -1.2
2,188,164 + -2.3
2,188,164 + -1.2
2,188,165 - +1.3
2,188,193 - -0.3
2,188,199 + +0.1
2,188,276 + -0.1
2,188,276 + -1.0
2,188,277 - -1.2
2,188,317 + -0.1
2,188,318 - +0.8
2,188,318 - +0.4
2,188,318 - -0.0
2,188,318 - -1.2
2,188,406 + +0.1
2,188,436 + zraR NIAGMN_11070 0.12 +0.4
2,188,436 + zraR NIAGMN_11070 0.12 +0.5
2,188,437 - zraR NIAGMN_11070 0.12 -0.0
2,188,472 + zraR NIAGMN_11070 0.15 -1.1
2,188,473 - zraR NIAGMN_11070 0.15 +0.0
2,188,473 - zraR NIAGMN_11070 0.15 +0.2
2,188,473 - zraR NIAGMN_11070 0.15 +0.3
2,188,474 + zraR NIAGMN_11070 0.15 +0.6
2,188,474 + zraR NIAGMN_11070 0.15 -0.4
2,188,475 - zraR NIAGMN_11070 0.15 +0.1
2,188,529 + zraR NIAGMN_11070 0.19 +1.7
2,188,602 - zraR NIAGMN_11070 0.25 -0.9
2,188,602 - zraR NIAGMN_11070 0.25 +1.1
2,188,647 - zraR NIAGMN_11070 0.28 -1.3
2,188,674 + zraR NIAGMN_11070 0.30 +0.9
2,188,674 + zraR NIAGMN_11070 0.30 +2.0
2,188,675 - zraR NIAGMN_11070 0.30 +0.1
2,188,675 - zraR NIAGMN_11070 0.30 +1.1
2,188,675 - zraR NIAGMN_11070 0.30 -0.9
2,188,675 - zraR NIAGMN_11070 0.30 +2.1
2,188,705 + zraR NIAGMN_11070 0.32 -0.7
2,188,706 - zraR NIAGMN_11070 0.33 -1.3
2,188,790 + zraR NIAGMN_11070 0.39 -0.3
2,188,791 - zraR NIAGMN_11070 0.39 -0.2
2,188,947 - zraR NIAGMN_11070 0.51 -1.0
2,189,020 - zraR NIAGMN_11070 0.56 -1.2
2,189,036 + zraR NIAGMN_11070 0.57 -0.6
2,189,037 - zraR NIAGMN_11070 0.57 +0.1
2,189,079 - zraR NIAGMN_11070 0.61 -1.1
2,189,222 + zraR NIAGMN_11070 0.71 -0.0
2,189,222 + zraR NIAGMN_11070 0.71 -0.2
2,189,222 + zraR NIAGMN_11070 0.71 +0.4
2,189,223 - zraR NIAGMN_11070 0.71 +0.3

Or see this region's nucleotide sequence