Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt treC and nrdD are separated by 393 nucleotides nrdD and nrdG are separated by 189 nucleotides nrdG and cybC are separated by 44 nucleotides
NIAGMN_09750: treC - alpha,alpha-phosphotrehalase, at 1,920,231 to 1,921,886
treC
NIAGMN_09755: nrdD - anaerobic ribonucleoside-triphosphate reductase, at 1,922,280 to 1,924,418
nrdD
NIAGMN_09765: nrdG - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 1,924,608 to 1,925,072
nrdG
NIAGMN_09770: cybC - cytochrome b562, at 1,925,117 to 1,925,503
cybC
Position (kb)
1922
1923
1924
1925 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1921.884 kb on + strand at 1921.989 kb on + strand at 1921.989 kb on + strand at 1921.989 kb on + strand at 1921.989 kb on + strand at 1921.990 kb on - strand at 1922.038 kb on - strand at 1922.076 kb on + strand at 1922.078 kb on + strand at 1922.078 kb on + strand at 1922.079 kb on - strand at 1922.081 kb on - strand at 1922.129 kb on + strand at 1922.129 kb on + strand at 1922.129 kb on + strand at 1922.129 kb on + strand at 1922.130 kb on - strand at 1922.130 kb on - strand at 1922.130 kb on - strand at 1922.136 kb on + strand at 1922.139 kb on + strand at 1922.140 kb on - strand at 1922.140 kb on - strand at 1922.268 kb on + strand at 1922.363 kb on + strand at 1922.363 kb on + strand at 1922.364 kb on - strand at 1922.364 kb on - strand at 1922.499 kb on + strand, within nrdD at 1922.499 kb on + strand, within nrdD at 1922.500 kb on - strand, within nrdD at 1922.520 kb on + strand, within nrdD at 1922.520 kb on + strand, within nrdD at 1922.520 kb on + strand, within nrdD at 1922.521 kb on - strand, within nrdD at 1922.521 kb on - strand, within nrdD at 1922.618 kb on - strand, within nrdD at 1922.697 kb on + strand, within nrdD at 1922.697 kb on + strand, within nrdD at 1922.697 kb on + strand, within nrdD at 1922.697 kb on + strand, within nrdD at 1922.697 kb on + strand, within nrdD at 1922.698 kb on - strand, within nrdD at 1922.761 kb on - strand, within nrdD at 1922.776 kb on - strand, within nrdD at 1922.776 kb on - strand, within nrdD at 1922.843 kb on + strand, within nrdD at 1922.885 kb on + strand, within nrdD at 1922.912 kb on + strand, within nrdD at 1922.913 kb on - strand, within nrdD at 1922.933 kb on + strand, within nrdD at 1922.933 kb on + strand, within nrdD at 1922.933 kb on + strand, within nrdD at 1922.937 kb on + strand, within nrdD at 1922.998 kb on - strand, within nrdD at 1923.057 kb on - strand, within nrdD at 1923.081 kb on + strand, within nrdD at 1923.082 kb on - strand, within nrdD at 1923.082 kb on - strand, within nrdD at 1923.082 kb on - strand, within nrdD at 1923.106 kb on - strand, within nrdD at 1923.112 kb on + strand, within nrdD at 1923.112 kb on + strand, within nrdD at 1923.113 kb on - strand, within nrdD at 1923.152 kb on - strand, within nrdD at 1923.152 kb on - strand, within nrdD at 1923.206 kb on + strand, within nrdD at 1923.221 kb on + strand, within nrdD at 1923.363 kb on + strand, within nrdD at 1923.363 kb on + strand, within nrdD at 1923.363 kb on + strand, within nrdD at 1923.364 kb on - strand, within nrdD at 1923.382 kb on - strand, within nrdD at 1923.382 kb on - strand, within nrdD at 1923.382 kb on - strand, within nrdD at 1923.382 kb on - strand, within nrdD at 1923.382 kb on - strand, within nrdD at 1923.391 kb on + strand, within nrdD at 1923.392 kb on - strand, within nrdD at 1923.524 kb on + strand, within nrdD at 1923.525 kb on - strand, within nrdD at 1923.596 kb on + strand, within nrdD at 1923.596 kb on + strand, within nrdD at 1923.597 kb on - strand, within nrdD at 1923.597 kb on - strand, within nrdD at 1923.597 kb on - strand, within nrdD at 1923.597 kb on - strand, within nrdD at 1923.597 kb on - strand, within nrdD at 1923.660 kb on + strand, within nrdD at 1923.660 kb on + strand, within nrdD at 1923.661 kb on - strand, within nrdD at 1923.661 kb on - strand, within nrdD at 1923.661 kb on - strand, within nrdD at 1923.662 kb on + strand, within nrdD at 1923.704 kb on + strand, within nrdD at 1923.704 kb on + strand, within nrdD at 1923.704 kb on + strand, within nrdD at 1923.705 kb on - strand, within nrdD at 1923.705 kb on - strand, within nrdD at 1923.705 kb on - strand, within nrdD at 1923.750 kb on + strand, within nrdD at 1923.751 kb on - strand, within nrdD at 1923.801 kb on + strand, within nrdD at 1923.801 kb on + strand, within nrdD at 1923.830 kb on + strand, within nrdD at 1923.888 kb on + strand, within nrdD at 1923.889 kb on - strand, within nrdD at 1923.993 kb on + strand, within nrdD at 1923.994 kb on - strand, within nrdD at 1923.994 kb on - strand, within nrdD at 1923.996 kb on + strand, within nrdD at 1923.996 kb on + strand, within nrdD at 1923.996 kb on + strand, within nrdD at 1923.996 kb on + strand, within nrdD at 1924.041 kb on + strand, within nrdD at 1924.158 kb on + strand, within nrdD at 1924.159 kb on - strand, within nrdD at 1924.159 kb on - strand, within nrdD at 1924.164 kb on + strand, within nrdD at 1924.164 kb on + strand, within nrdD at 1924.174 kb on + strand, within nrdD at 1924.174 kb on + strand, within nrdD at 1924.175 kb on - strand, within nrdD at 1924.183 kb on - strand, within nrdD at 1924.193 kb on + strand, within nrdD at 1924.193 kb on + strand, within nrdD at 1924.194 kb on - strand, within nrdD at 1924.212 kb on + strand at 1924.212 kb on + strand at 1924.212 kb on + strand at 1924.213 kb on - strand at 1924.304 kb on - strand at 1924.327 kb on + strand at 1924.327 kb on + strand at 1924.328 kb on - strand at 1924.411 kb on + strand at 1924.411 kb on + strand at 1924.412 kb on - strand at 1924.412 kb on - strand at 1924.412 kb on - strand at 1924.412 kb on - strand at 1924.488 kb on - strand at 1924.505 kb on + strand at 1924.533 kb on - strand at 1924.571 kb on + strand at 1924.572 kb on - strand at 1924.579 kb on - strand at 1924.592 kb on + strand at 1924.606 kb on + strand at 1924.614 kb on + strand at 1924.614 kb on + strand at 1924.615 kb on - strand at 1924.623 kb on + strand at 1924.623 kb on + strand at 1924.623 kb on + strand at 1924.623 kb on + strand at 1924.623 kb on + strand at 1924.624 kb on - strand at 1924.624 kb on - strand at 1924.626 kb on + strand at 1924.627 kb on - strand at 1924.707 kb on + strand, within nrdG at 1924.707 kb on + strand, within nrdG at 1924.708 kb on - strand, within nrdG at 1924.708 kb on - strand, within nrdG at 1924.708 kb on - strand, within nrdG at 1924.708 kb on - strand, within nrdG at 1924.709 kb on + strand, within nrdG at 1924.729 kb on + strand, within nrdG at 1924.748 kb on + strand, within nrdG at 1924.748 kb on + strand, within nrdG at 1924.749 kb on - strand, within nrdG at 1924.749 kb on - strand, within nrdG at 1924.749 kb on - strand, within nrdG at 1924.751 kb on + strand, within nrdG at 1924.751 kb on + strand, within nrdG at 1924.752 kb on - strand, within nrdG at 1924.797 kb on - strand, within nrdG at 1924.797 kb on - strand, within nrdG at 1924.811 kb on + strand, within nrdG at 1924.812 kb on - strand, within nrdG at 1924.812 kb on - strand, within nrdG at 1924.812 kb on - strand, within nrdG at 1924.874 kb on - strand, within nrdG at 1924.926 kb on + strand, within nrdG at 1924.928 kb on + strand, within nrdG at 1924.928 kb on + strand, within nrdG at 1924.976 kb on + strand, within nrdG at 1925.073 kb on + strand at 1925.073 kb on + strand at 1925.073 kb on + strand at 1925.073 kb on + strand at 1925.073 kb on + strand at 1925.073 kb on + strand at 1925.074 kb on - strand at 1925.074 kb on - strand at 1925.074 kb on - strand at 1925.074 kb on - strand at 1925.086 kb on - strand at 1925.086 kb on - strand at 1925.086 kb on - strand at 1925.124 kb on + strand at 1925.124 kb on + strand at 1925.125 kb on - strand at 1925.125 kb on - strand at 1925.137 kb on - strand at 1925.186 kb on + strand, within cybC at 1925.186 kb on + strand, within cybC at 1925.187 kb on - strand, within cybC at 1925.191 kb on + strand, within cybC at 1925.192 kb on - strand, within cybC at 1925.192 kb on - strand, within cybC at 1925.287 kb on + strand, within cybC at 1925.288 kb on - strand, within cybC at 1925.288 kb on - strand, within cybC at 1925.288 kb on - strand, within cybC at 1925.396 kb on + strand, within cybC
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,921,884 + -0.6 1,921,989 + +1.8 1,921,989 + -0.9 1,921,989 + -0.4 1,921,989 + +1.8 1,921,990 - +0.6 1,922,038 - +0.8 1,922,076 + -0.9 1,922,078 + -0.6 1,922,078 + -0.8 1,922,079 - -0.7 1,922,081 - -0.5 1,922,129 + +0.3 1,922,129 + +0.0 1,922,129 + -1.6 1,922,129 + -1.2 1,922,130 - -0.7 1,922,130 - +1.2 1,922,130 - -0.6 1,922,136 + +0.6 1,922,139 + -1.2 1,922,140 - -0.3 1,922,140 - +1.8 1,922,268 + -0.2 1,922,363 + -0.9 1,922,363 + +1.2 1,922,364 - -0.8 1,922,364 - -2.0 1,922,499 + nrdD NIAGMN_09755 0.10 -0.3 1,922,499 + nrdD NIAGMN_09755 0.10 -0.2 1,922,500 - nrdD NIAGMN_09755 0.10 -0.2 1,922,520 + nrdD NIAGMN_09755 0.11 +0.7 1,922,520 + nrdD NIAGMN_09755 0.11 -0.4 1,922,520 + nrdD NIAGMN_09755 0.11 +0.3 1,922,521 - nrdD NIAGMN_09755 0.11 +0.3 1,922,521 - nrdD NIAGMN_09755 0.11 -0.2 1,922,618 - nrdD NIAGMN_09755 0.16 +0.4 1,922,697 + nrdD NIAGMN_09755 0.19 -0.2 1,922,697 + nrdD NIAGMN_09755 0.19 -0.1 1,922,697 + nrdD NIAGMN_09755 0.19 -0.2 1,922,697 + nrdD NIAGMN_09755 0.19 +1.3 1,922,697 + nrdD NIAGMN_09755 0.19 -0.7 1,922,698 - nrdD NIAGMN_09755 0.20 -0.1 1,922,761 - nrdD NIAGMN_09755 0.22 +0.1 1,922,776 - nrdD NIAGMN_09755 0.23 -0.9 1,922,776 - nrdD NIAGMN_09755 0.23 -2.7 1,922,843 + nrdD NIAGMN_09755 0.26 +2.0 1,922,885 + nrdD NIAGMN_09755 0.28 -1.3 1,922,912 + nrdD NIAGMN_09755 0.30 -0.9 1,922,913 - nrdD NIAGMN_09755 0.30 +0.5 1,922,933 + nrdD NIAGMN_09755 0.31 -0.1 1,922,933 + nrdD NIAGMN_09755 0.31 +0.8 1,922,933 + nrdD NIAGMN_09755 0.31 +1.8 1,922,937 + nrdD NIAGMN_09755 0.31 +1.0 1,922,998 - nrdD NIAGMN_09755 0.34 +2.8 1,923,057 - nrdD NIAGMN_09755 0.36 -0.4 1,923,081 + nrdD NIAGMN_09755 0.37 +0.3 1,923,082 - nrdD NIAGMN_09755 0.37 +0.1 1,923,082 - nrdD NIAGMN_09755 0.37 -0.1 1,923,082 - nrdD NIAGMN_09755 0.37 -2.4 1,923,106 - nrdD NIAGMN_09755 0.39 +0.0 1,923,112 + nrdD NIAGMN_09755 0.39 +1.1 1,923,112 + nrdD NIAGMN_09755 0.39 -1.9 1,923,113 - nrdD NIAGMN_09755 0.39 +0.2 1,923,152 - nrdD NIAGMN_09755 0.41 +0.9 1,923,152 - nrdD NIAGMN_09755 0.41 +0.5 1,923,206 + nrdD NIAGMN_09755 0.43 +0.4 1,923,221 + nrdD NIAGMN_09755 0.44 -0.1 1,923,363 + nrdD NIAGMN_09755 0.51 -1.8 1,923,363 + nrdD NIAGMN_09755 0.51 +0.8 1,923,363 + nrdD NIAGMN_09755 0.51 +0.8 1,923,364 - nrdD NIAGMN_09755 0.51 +0.8 1,923,382 - nrdD NIAGMN_09755 0.52 -0.7 1,923,382 - nrdD NIAGMN_09755 0.52 -1.7 1,923,382 - nrdD NIAGMN_09755 0.52 -1.6 1,923,382 - nrdD NIAGMN_09755 0.52 +0.1 1,923,382 - nrdD NIAGMN_09755 0.52 +0.4 1,923,391 + nrdD NIAGMN_09755 0.52 +0.1 1,923,392 - nrdD NIAGMN_09755 0.52 +0.3 1,923,524 + nrdD NIAGMN_09755 0.58 +0.2 1,923,525 - nrdD NIAGMN_09755 0.58 +0.2 1,923,596 + nrdD NIAGMN_09755 0.62 -0.2 1,923,596 + nrdD NIAGMN_09755 0.62 -0.8 1,923,597 - nrdD NIAGMN_09755 0.62 +0.1 1,923,597 - nrdD NIAGMN_09755 0.62 +0.6 1,923,597 - nrdD NIAGMN_09755 0.62 +0.2 1,923,597 - nrdD NIAGMN_09755 0.62 +1.0 1,923,597 - nrdD NIAGMN_09755 0.62 -0.0 1,923,660 + nrdD NIAGMN_09755 0.65 +0.2 1,923,660 + nrdD NIAGMN_09755 0.65 -0.0 1,923,661 - nrdD NIAGMN_09755 0.65 -1.1 1,923,661 - nrdD NIAGMN_09755 0.65 +0.2 1,923,661 - nrdD NIAGMN_09755 0.65 +1.8 1,923,662 + nrdD NIAGMN_09755 0.65 +0.1 1,923,704 + nrdD NIAGMN_09755 0.67 +0.6 1,923,704 + nrdD NIAGMN_09755 0.67 +0.3 1,923,704 + nrdD NIAGMN_09755 0.67 +0.2 1,923,705 - nrdD NIAGMN_09755 0.67 -0.3 1,923,705 - nrdD NIAGMN_09755 0.67 +1.2 1,923,705 - nrdD NIAGMN_09755 0.67 +0.3 1,923,750 + nrdD NIAGMN_09755 0.69 +1.2 1,923,751 - nrdD NIAGMN_09755 0.69 +0.8 1,923,801 + nrdD NIAGMN_09755 0.71 -0.7 1,923,801 + nrdD NIAGMN_09755 0.71 +0.8 1,923,830 + nrdD NIAGMN_09755 0.72 +0.3 1,923,888 + nrdD NIAGMN_09755 0.75 -0.8 1,923,889 - nrdD NIAGMN_09755 0.75 +0.8 1,923,993 + nrdD NIAGMN_09755 0.80 -0.8 1,923,994 - nrdD NIAGMN_09755 0.80 +0.7 1,923,994 - nrdD NIAGMN_09755 0.80 +0.8 1,923,996 + nrdD NIAGMN_09755 0.80 -0.3 1,923,996 + nrdD NIAGMN_09755 0.80 +0.3 1,923,996 + nrdD NIAGMN_09755 0.80 -0.0 1,923,996 + nrdD NIAGMN_09755 0.80 -0.6 1,924,041 + nrdD NIAGMN_09755 0.82 +0.2 1,924,158 + nrdD NIAGMN_09755 0.88 -1.3 1,924,159 - nrdD NIAGMN_09755 0.88 +1.0 1,924,159 - nrdD NIAGMN_09755 0.88 -1.1 1,924,164 + nrdD NIAGMN_09755 0.88 +0.5 1,924,164 + nrdD NIAGMN_09755 0.88 -0.1 1,924,174 + nrdD NIAGMN_09755 0.89 +0.7 1,924,174 + nrdD NIAGMN_09755 0.89 -0.2 1,924,175 - nrdD NIAGMN_09755 0.89 +1.3 1,924,183 - nrdD NIAGMN_09755 0.89 +0.1 1,924,193 + nrdD NIAGMN_09755 0.89 +0.4 1,924,193 + nrdD NIAGMN_09755 0.89 +1.2 1,924,194 - nrdD NIAGMN_09755 0.89 +0.8 1,924,212 + +0.3 1,924,212 + +1.8 1,924,212 + +0.3 1,924,213 - +1.0 1,924,304 - -0.5 1,924,327 + -1.3 1,924,327 + +0.8 1,924,328 - -0.7 1,924,411 + -0.6 1,924,411 + +0.7 1,924,412 - -1.2 1,924,412 - +0.7 1,924,412 - -1.8 1,924,412 - -1.0 1,924,488 - -0.6 1,924,505 + +0.2 1,924,533 - -0.6 1,924,571 + -1.0 1,924,572 - +0.4 1,924,579 - -0.1 1,924,592 + +1.3 1,924,606 + +0.8 1,924,614 + -0.3 1,924,614 + -1.1 1,924,615 - -1.0 1,924,623 + +1.2 1,924,623 + +0.6 1,924,623 + -0.2 1,924,623 + -0.4 1,924,623 + +1.0 1,924,624 - -0.3 1,924,624 - -0.1 1,924,626 + -0.8 1,924,627 - +1.3 1,924,707 + nrdG NIAGMN_09765 0.21 +1.3 1,924,707 + nrdG NIAGMN_09765 0.21 -0.2 1,924,708 - nrdG NIAGMN_09765 0.22 +0.4 1,924,708 - nrdG NIAGMN_09765 0.22 +1.1 1,924,708 - nrdG NIAGMN_09765 0.22 -0.3 1,924,708 - nrdG NIAGMN_09765 0.22 -1.0 1,924,709 + nrdG NIAGMN_09765 0.22 +0.7 1,924,729 + nrdG NIAGMN_09765 0.26 -2.2 1,924,748 + nrdG NIAGMN_09765 0.30 +0.8 1,924,748 + nrdG NIAGMN_09765 0.30 -0.1 1,924,749 - nrdG NIAGMN_09765 0.30 -0.3 1,924,749 - nrdG NIAGMN_09765 0.30 +0.5 1,924,749 - nrdG NIAGMN_09765 0.30 +0.3 1,924,751 + nrdG NIAGMN_09765 0.31 -0.8 1,924,751 + nrdG NIAGMN_09765 0.31 +1.4 1,924,752 - nrdG NIAGMN_09765 0.31 -0.6 1,924,797 - nrdG NIAGMN_09765 0.41 -1.6 1,924,797 - nrdG NIAGMN_09765 0.41 -0.6 1,924,811 + nrdG NIAGMN_09765 0.44 +0.4 1,924,812 - nrdG NIAGMN_09765 0.44 -0.2 1,924,812 - nrdG NIAGMN_09765 0.44 -0.1 1,924,812 - nrdG NIAGMN_09765 0.44 -0.1 1,924,874 - nrdG NIAGMN_09765 0.57 +0.8 1,924,926 + nrdG NIAGMN_09765 0.68 -0.2 1,924,928 + nrdG NIAGMN_09765 0.69 -1.2 1,924,928 + nrdG NIAGMN_09765 0.69 -0.8 1,924,976 + nrdG NIAGMN_09765 0.79 +0.1 1,925,073 + +0.6 1,925,073 + +0.2 1,925,073 + +0.2 1,925,073 + +0.8 1,925,073 + -0.5 1,925,073 + -0.4 1,925,074 - -0.0 1,925,074 - +0.7 1,925,074 - +0.0 1,925,074 - +0.7 1,925,086 - +1.8 1,925,086 - -0.2 1,925,086 - +0.5 1,925,124 + -0.8 1,925,124 + +0.8 1,925,125 - -0.7 1,925,125 - -0.1 1,925,137 - +0.0 1,925,186 + cybC NIAGMN_09770 0.18 -0.7 1,925,186 + cybC NIAGMN_09770 0.18 +0.3 1,925,187 - cybC NIAGMN_09770 0.18 +1.0 1,925,191 + cybC NIAGMN_09770 0.19 +0.5 1,925,192 - cybC NIAGMN_09770 0.19 -0.7 1,925,192 - cybC NIAGMN_09770 0.19 +0.1 1,925,287 + cybC NIAGMN_09770 0.44 -1.0 1,925,288 - cybC NIAGMN_09770 0.44 +0.3 1,925,288 - cybC NIAGMN_09770 0.44 +1.3 1,925,288 - cybC NIAGMN_09770 0.44 -0.9 1,925,396 + cybC NIAGMN_09770 0.72 +0.4
Or see this region's nucleotide sequence