Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09110

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjjW and yjjV are separated by 213 nucleotidesyjjV and yjjU overlap by 4 nucleotides NIAGMN_09095: yjjW - Putative glycyl-radical enzyme activating enzyme YjjW, at 1,767,110 to 1,767,973 yjjW NIAGMN_09110: yjjV - metal-dependent hydrolase, at 1,768,187 to 1,768,969 yjjV NIAGMN_09115: yjjU - Uncharacterized protein YjjU, at 1,768,966 to 1,770,039 yjjU Position (kb) 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1767.349 kb on + strand, within yjjWat 1767.350 kb on - strand, within yjjWat 1767.419 kb on - strand, within yjjWat 1767.498 kb on + strand, within yjjWat 1767.511 kb on + strand, within yjjWat 1767.517 kb on + strand, within yjjWat 1767.565 kb on + strand, within yjjWat 1767.566 kb on - strand, within yjjWat 1767.566 kb on - strand, within yjjWat 1767.571 kb on + strand, within yjjWat 1767.572 kb on - strand, within yjjWat 1767.692 kb on - strand, within yjjWat 1767.770 kb on + strand, within yjjWat 1767.770 kb on + strand, within yjjWat 1767.860 kb on + strand, within yjjWat 1767.965 kb on + strandat 1767.991 kb on - strandat 1768.019 kb on + strandat 1768.020 kb on - strandat 1768.020 kb on - strandat 1768.120 kb on + strandat 1768.121 kb on - strandat 1768.121 kb on - strandat 1768.121 kb on - strandat 1768.130 kb on + strandat 1768.149 kb on + strandat 1768.202 kb on - strandat 1768.212 kb on + strandat 1768.212 kb on + strandat 1768.212 kb on + strandat 1768.213 kb on - strandat 1768.213 kb on - strandat 1768.213 kb on - strandat 1768.220 kb on - strandat 1768.220 kb on - strandat 1768.222 kb on + strandat 1768.222 kb on + strandat 1768.222 kb on + strandat 1768.222 kb on + strandat 1768.223 kb on - strandat 1768.223 kb on - strandat 1768.405 kb on + strand, within yjjVat 1768.426 kb on + strand, within yjjVat 1768.426 kb on + strand, within yjjVat 1768.426 kb on + strand, within yjjVat 1768.427 kb on - strand, within yjjVat 1768.427 kb on - strand, within yjjVat 1768.427 kb on - strand, within yjjVat 1768.427 kb on - strand, within yjjVat 1768.427 kb on - strand, within yjjVat 1768.427 kb on - strand, within yjjVat 1768.436 kb on + strand, within yjjVat 1768.460 kb on + strand, within yjjVat 1768.461 kb on - strand, within yjjVat 1768.535 kb on - strand, within yjjVat 1768.727 kb on + strand, within yjjVat 1768.727 kb on + strand, within yjjVat 1768.727 kb on + strand, within yjjVat 1768.728 kb on - strand, within yjjVat 1768.728 kb on - strand, within yjjVat 1768.728 kb on - strand, within yjjVat 1768.751 kb on - strand, within yjjVat 1768.751 kb on - strand, within yjjVat 1768.765 kb on + strand, within yjjVat 1768.791 kb on + strand, within yjjVat 1768.791 kb on + strand, within yjjVat 1768.919 kb on - strandat 1768.986 kb on + strandat 1768.986 kb on + strandat 1768.987 kb on - strandat 1768.987 kb on - strandat 1769.038 kb on - strandat 1769.128 kb on + strand, within yjjUat 1769.128 kb on + strand, within yjjUat 1769.128 kb on + strand, within yjjUat 1769.128 kb on + strand, within yjjUat 1769.128 kb on + strand, within yjjUat 1769.128 kb on + strand, within yjjUat 1769.129 kb on - strand, within yjjUat 1769.129 kb on - strand, within yjjUat 1769.129 kb on - strand, within yjjUat 1769.181 kb on - strand, within yjjUat 1769.181 kb on - strand, within yjjUat 1769.221 kb on - strand, within yjjUat 1769.221 kb on - strand, within yjjUat 1769.221 kb on - strand, within yjjUat 1769.223 kb on + strand, within yjjUat 1769.223 kb on + strand, within yjjUat 1769.223 kb on + strand, within yjjUat 1769.223 kb on + strand, within yjjUat 1769.223 kb on + strand, within yjjUat 1769.223 kb on + strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.224 kb on - strand, within yjjUat 1769.228 kb on - strand, within yjjUat 1769.228 kb on - strand, within yjjUat 1769.228 kb on - strand, within yjjUat 1769.228 kb on - strand, within yjjUat 1769.228 kb on - strand, within yjjUat 1769.228 kb on - strand, within yjjUat 1769.303 kb on + strand, within yjjUat 1769.396 kb on + strand, within yjjUat 1769.397 kb on - strand, within yjjUat 1769.397 kb on - strand, within yjjUat 1769.397 kb on - strand, within yjjUat 1769.399 kb on + strand, within yjjUat 1769.399 kb on + strand, within yjjUat 1769.400 kb on - strand, within yjjUat 1769.400 kb on - strand, within yjjUat 1769.498 kb on + strand, within yjjUat 1769.498 kb on + strand, within yjjUat 1769.499 kb on - strand, within yjjUat 1769.502 kb on + strand, within yjjUat 1769.502 kb on + strand, within yjjUat 1769.502 kb on + strand, within yjjUat 1769.503 kb on - strand, within yjjUat 1769.503 kb on - strand, within yjjUat 1769.503 kb on - strand, within yjjUat 1769.503 kb on - strand, within yjjUat 1769.591 kb on - strand, within yjjUat 1769.610 kb on - strand, within yjjUat 1769.634 kb on + strand, within yjjUat 1769.634 kb on + strand, within yjjUat 1769.634 kb on + strand, within yjjUat 1769.634 kb on + strand, within yjjUat 1769.634 kb on + strand, within yjjUat 1769.635 kb on - strand, within yjjUat 1769.635 kb on - strand, within yjjUat 1769.635 kb on - strand, within yjjUat 1769.635 kb on - strand, within yjjUat 1769.636 kb on + strand, within yjjUat 1769.637 kb on - strand, within yjjUat 1769.637 kb on - strand, within yjjUat 1769.637 kb on - strand, within yjjUat 1769.784 kb on + strand, within yjjUat 1769.829 kb on + strand, within yjjUat 1769.829 kb on + strand, within yjjUat 1769.831 kb on + strand, within yjjUat 1769.831 kb on + strand, within yjjUat 1769.831 kb on + strand, within yjjUat 1769.832 kb on - strand, within yjjUat 1769.870 kb on + strand, within yjjUat 1769.902 kb on - strand, within yjjUat 1769.966 kb on - strandat 1769.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,767,349 + yjjW NIAGMN_09095 0.28 +0.8
1,767,350 - yjjW NIAGMN_09095 0.28 -0.9
1,767,419 - yjjW NIAGMN_09095 0.36 -0.8
1,767,498 + yjjW NIAGMN_09095 0.45 -0.6
1,767,511 + yjjW NIAGMN_09095 0.46 -0.1
1,767,517 + yjjW NIAGMN_09095 0.47 -0.4
1,767,565 + yjjW NIAGMN_09095 0.53 -0.6
1,767,566 - yjjW NIAGMN_09095 0.53 +0.4
1,767,566 - yjjW NIAGMN_09095 0.53 -0.4
1,767,571 + yjjW NIAGMN_09095 0.53 -0.5
1,767,572 - yjjW NIAGMN_09095 0.53 -0.8
1,767,692 - yjjW NIAGMN_09095 0.67 -0.6
1,767,770 + yjjW NIAGMN_09095 0.76 +0.3
1,767,770 + yjjW NIAGMN_09095 0.76 -0.8
1,767,860 + yjjW NIAGMN_09095 0.87 -2.5
1,767,965 + +0.6
1,767,991 - -0.4
1,768,019 + +2.1
1,768,020 - -0.0
1,768,020 - -0.5
1,768,120 + +0.3
1,768,121 - +1.2
1,768,121 - +0.5
1,768,121 - -0.7
1,768,130 + -0.8
1,768,149 + +0.9
1,768,202 - -0.6
1,768,212 + -0.6
1,768,212 + -0.1
1,768,212 + +0.9
1,768,213 - -1.7
1,768,213 - +0.9
1,768,213 - +0.8
1,768,220 - -0.0
1,768,220 - +1.8
1,768,222 + -0.5
1,768,222 + -0.2
1,768,222 + -0.7
1,768,222 + -0.2
1,768,223 - -1.4
1,768,223 - -0.4
1,768,405 + yjjV NIAGMN_09110 0.28 -1.2
1,768,426 + yjjV NIAGMN_09110 0.31 +0.1
1,768,426 + yjjV NIAGMN_09110 0.31 -0.8
1,768,426 + yjjV NIAGMN_09110 0.31 -1.6
1,768,427 - yjjV NIAGMN_09110 0.31 -0.2
1,768,427 - yjjV NIAGMN_09110 0.31 -0.2
1,768,427 - yjjV NIAGMN_09110 0.31 +0.1
1,768,427 - yjjV NIAGMN_09110 0.31 -0.9
1,768,427 - yjjV NIAGMN_09110 0.31 +1.8
1,768,427 - yjjV NIAGMN_09110 0.31 -1.0
1,768,436 + yjjV NIAGMN_09110 0.32 +0.5
1,768,460 + yjjV NIAGMN_09110 0.35 +0.2
1,768,461 - yjjV NIAGMN_09110 0.35 +0.8
1,768,535 - yjjV NIAGMN_09110 0.44 +0.4
1,768,727 + yjjV NIAGMN_09110 0.69 +0.5
1,768,727 + yjjV NIAGMN_09110 0.69 -0.8
1,768,727 + yjjV NIAGMN_09110 0.69 +0.4
1,768,728 - yjjV NIAGMN_09110 0.69 -0.1
1,768,728 - yjjV NIAGMN_09110 0.69 -0.2
1,768,728 - yjjV NIAGMN_09110 0.69 +0.1
1,768,751 - yjjV NIAGMN_09110 0.72 +0.2
1,768,751 - yjjV NIAGMN_09110 0.72 +0.6
1,768,765 + yjjV NIAGMN_09110 0.74 -0.5
1,768,791 + yjjV NIAGMN_09110 0.77 +0.5
1,768,791 + yjjV NIAGMN_09110 0.77 -0.6
1,768,919 - -0.1
1,768,986 + +1.8
1,768,986 + +1.1
1,768,987 - +0.2
1,768,987 - -0.6
1,769,038 - -0.8
1,769,128 + yjjU NIAGMN_09115 0.15 -0.4
1,769,128 + yjjU NIAGMN_09115 0.15 -0.0
1,769,128 + yjjU NIAGMN_09115 0.15 +0.8
1,769,128 + yjjU NIAGMN_09115 0.15 +0.2
1,769,128 + yjjU NIAGMN_09115 0.15 -0.2
1,769,128 + yjjU NIAGMN_09115 0.15 +0.5
1,769,129 - yjjU NIAGMN_09115 0.15 -0.4
1,769,129 - yjjU NIAGMN_09115 0.15 -0.5
1,769,129 - yjjU NIAGMN_09115 0.15 -1.9
1,769,181 - yjjU NIAGMN_09115 0.20 -2.6
1,769,181 - yjjU NIAGMN_09115 0.20 -0.5
1,769,221 - yjjU NIAGMN_09115 0.24 +0.7
1,769,221 - yjjU NIAGMN_09115 0.24 +0.3
1,769,221 - yjjU NIAGMN_09115 0.24 -0.2
1,769,223 + yjjU NIAGMN_09115 0.24 -0.2
1,769,223 + yjjU NIAGMN_09115 0.24 -1.0
1,769,223 + yjjU NIAGMN_09115 0.24 -0.3
1,769,223 + yjjU NIAGMN_09115 0.24 +0.1
1,769,223 + yjjU NIAGMN_09115 0.24 +0.2
1,769,223 + yjjU NIAGMN_09115 0.24 -0.3
1,769,224 - yjjU NIAGMN_09115 0.24 -0.2
1,769,224 - yjjU NIAGMN_09115 0.24 -2.2
1,769,224 - yjjU NIAGMN_09115 0.24 -0.7
1,769,224 - yjjU NIAGMN_09115 0.24 +0.2
1,769,224 - yjjU NIAGMN_09115 0.24 +0.8
1,769,224 - yjjU NIAGMN_09115 0.24 -0.5
1,769,224 - yjjU NIAGMN_09115 0.24 -0.6
1,769,224 - yjjU NIAGMN_09115 0.24 -0.4
1,769,224 - yjjU NIAGMN_09115 0.24 -0.0
1,769,224 - yjjU NIAGMN_09115 0.24 +0.4
1,769,224 - yjjU NIAGMN_09115 0.24 -0.1
1,769,224 - yjjU NIAGMN_09115 0.24 +0.6
1,769,228 - yjjU NIAGMN_09115 0.24 +3.8
1,769,228 - yjjU NIAGMN_09115 0.24 +0.4
1,769,228 - yjjU NIAGMN_09115 0.24 -1.4
1,769,228 - yjjU NIAGMN_09115 0.24 -0.0
1,769,228 - yjjU NIAGMN_09115 0.24 +0.5
1,769,228 - yjjU NIAGMN_09115 0.24 -0.6
1,769,303 + yjjU NIAGMN_09115 0.31 -0.6
1,769,396 + yjjU NIAGMN_09115 0.40 +1.4
1,769,397 - yjjU NIAGMN_09115 0.40 -1.7
1,769,397 - yjjU NIAGMN_09115 0.40 -0.1
1,769,397 - yjjU NIAGMN_09115 0.40 +0.3
1,769,399 + yjjU NIAGMN_09115 0.40 +0.4
1,769,399 + yjjU NIAGMN_09115 0.40 +0.6
1,769,400 - yjjU NIAGMN_09115 0.40 -0.9
1,769,400 - yjjU NIAGMN_09115 0.40 -1.6
1,769,498 + yjjU NIAGMN_09115 0.50 +0.8
1,769,498 + yjjU NIAGMN_09115 0.50 +0.6
1,769,499 - yjjU NIAGMN_09115 0.50 +0.8
1,769,502 + yjjU NIAGMN_09115 0.50 -0.2
1,769,502 + yjjU NIAGMN_09115 0.50 -0.6
1,769,502 + yjjU NIAGMN_09115 0.50 +0.5
1,769,503 - yjjU NIAGMN_09115 0.50 -2.1
1,769,503 - yjjU NIAGMN_09115 0.50 -0.3
1,769,503 - yjjU NIAGMN_09115 0.50 +0.4
1,769,503 - yjjU NIAGMN_09115 0.50 -0.2
1,769,591 - yjjU NIAGMN_09115 0.58 -1.8
1,769,610 - yjjU NIAGMN_09115 0.60 -0.0
1,769,634 + yjjU NIAGMN_09115 0.62 +1.8
1,769,634 + yjjU NIAGMN_09115 0.62 -0.6
1,769,634 + yjjU NIAGMN_09115 0.62 -0.7
1,769,634 + yjjU NIAGMN_09115 0.62 -0.6
1,769,634 + yjjU NIAGMN_09115 0.62 -1.9
1,769,635 - yjjU NIAGMN_09115 0.62 -1.2
1,769,635 - yjjU NIAGMN_09115 0.62 -0.8
1,769,635 - yjjU NIAGMN_09115 0.62 -0.5
1,769,635 - yjjU NIAGMN_09115 0.62 +1.2
1,769,636 + yjjU NIAGMN_09115 0.62 -1.4
1,769,637 - yjjU NIAGMN_09115 0.62 -0.6
1,769,637 - yjjU NIAGMN_09115 0.62 -0.1
1,769,637 - yjjU NIAGMN_09115 0.62 -0.4
1,769,784 + yjjU NIAGMN_09115 0.76 -0.4
1,769,829 + yjjU NIAGMN_09115 0.80 -1.2
1,769,829 + yjjU NIAGMN_09115 0.80 -0.2
1,769,831 + yjjU NIAGMN_09115 0.81 -0.8
1,769,831 + yjjU NIAGMN_09115 0.81 -1.0
1,769,831 + yjjU NIAGMN_09115 0.81 +0.0
1,769,832 - yjjU NIAGMN_09115 0.81 -0.5
1,769,870 + yjjU NIAGMN_09115 0.84 -0.6
1,769,902 - yjjU NIAGMN_09115 0.87 +1.8
1,769,966 - +0.2
1,769,966 - +0.0

Or see this region's nucleotide sequence