Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cueO and yacC are separated by 204 nucleotides yacC and speE are separated by 105 nucleotides speE and speD are separated by 15 nucleotides speD and yacL are separated by 37 nucleotides
NIAGMN_08305: cueO - multicopper oxidase CueO, at 1,599,039 to 1,600,589
cueO
NIAGMN_08310: yacC - YacC family pilotin-like protein, at 1,600,794 to 1,601,102
yacC
NIAGMN_08315: speE - polyamine aminopropyltransferase, at 1,601,208 to 1,602,074
speE
NIAGMN_08320: speD - adenosylmethionine decarboxylase, at 1,602,090 to 1,602,884
speD
NIAGMN_08325: yacL - protein YacL, at 1,602,922 to 1,603,284
yacL
Position (kb) 1601
1602
1603 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1600.269 kb on + strand, within cueO at 1600.318 kb on + strand, within cueO at 1600.318 kb on + strand, within cueO at 1600.318 kb on + strand, within cueO at 1600.318 kb on + strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.319 kb on - strand, within cueO at 1600.322 kb on + strand, within cueO at 1600.322 kb on + strand, within cueO at 1600.322 kb on + strand, within cueO at 1600.322 kb on + strand, within cueO at 1600.323 kb on - strand, within cueO at 1600.323 kb on - strand, within cueO at 1600.323 kb on - strand, within cueO at 1600.323 kb on - strand, within cueO at 1600.384 kb on + strand, within cueO at 1600.384 kb on + strand, within cueO at 1600.385 kb on - strand, within cueO at 1600.385 kb on - strand, within cueO at 1600.385 kb on - strand, within cueO at 1600.394 kb on + strand, within cueO at 1600.395 kb on - strand, within cueO at 1600.395 kb on - strand, within cueO at 1600.395 kb on - strand, within cueO at 1600.395 kb on - strand, within cueO at 1600.418 kb on + strand, within cueO at 1600.418 kb on + strand, within cueO at 1600.418 kb on + strand, within cueO at 1600.419 kb on - strand, within cueO at 1600.436 kb on + strand at 1600.437 kb on - strand at 1600.437 kb on - strand at 1600.440 kb on + strand at 1600.440 kb on + strand at 1600.440 kb on + strand at 1600.441 kb on - strand at 1600.589 kb on + strand at 1600.590 kb on - strand at 1600.590 kb on - strand at 1600.590 kb on - strand at 1600.590 kb on - strand at 1600.590 kb on - strand at 1600.593 kb on + strand at 1600.639 kb on + strand at 1600.639 kb on + strand at 1600.639 kb on + strand at 1600.640 kb on - strand at 1600.640 kb on - strand at 1600.640 kb on - strand at 1600.682 kb on - strand at 1600.692 kb on - strand at 1600.692 kb on - strand at 1600.692 kb on - strand at 1600.727 kb on + strand at 1600.727 kb on + strand at 1600.728 kb on - strand at 1600.736 kb on + strand at 1600.736 kb on + strand at 1600.747 kb on + strand at 1600.747 kb on + strand at 1600.747 kb on + strand at 1600.748 kb on - strand at 1600.815 kb on + strand at 1600.816 kb on - strand at 1600.856 kb on - strand, within yacC at 1600.903 kb on + strand, within yacC at 1600.967 kb on + strand, within yacC at 1600.972 kb on - strand, within yacC at 1600.972 kb on - strand, within yacC at 1601.010 kb on + strand, within yacC at 1601.091 kb on + strand at 1601.092 kb on - strand at 1601.092 kb on - strand at 1601.126 kb on + strand at 1601.127 kb on - strand at 1601.127 kb on - strand at 1601.153 kb on + strand at 1601.153 kb on + strand at 1601.157 kb on + strand at 1601.157 kb on + strand at 1601.200 kb on - strand at 1601.200 kb on - strand at 1601.239 kb on + strand at 1601.273 kb on + strand at 1601.273 kb on + strand at 1601.273 kb on + strand at 1601.274 kb on - strand at 1601.283 kb on + strand at 1601.344 kb on + strand, within speE at 1601.345 kb on - strand, within speE at 1601.362 kb on + strand, within speE at 1601.363 kb on - strand, within speE at 1601.365 kb on + strand, within speE at 1601.390 kb on + strand, within speE at 1601.390 kb on + strand, within speE at 1601.391 kb on - strand, within speE at 1601.391 kb on - strand, within speE at 1601.391 kb on - strand, within speE at 1601.394 kb on + strand, within speE at 1601.394 kb on + strand, within speE at 1601.394 kb on + strand, within speE at 1601.394 kb on + strand, within speE at 1601.395 kb on - strand, within speE at 1601.395 kb on - strand, within speE at 1601.395 kb on - strand, within speE at 1601.395 kb on - strand, within speE at 1601.501 kb on + strand, within speE at 1601.565 kb on + strand, within speE at 1601.565 kb on + strand, within speE at 1601.566 kb on - strand, within speE at 1601.566 kb on - strand, within speE at 1601.579 kb on + strand, within speE at 1601.592 kb on + strand, within speE at 1601.672 kb on + strand, within speE at 1601.672 kb on + strand, within speE at 1601.842 kb on - strand, within speE at 1601.884 kb on - strand, within speE at 1601.886 kb on + strand, within speE at 1601.921 kb on + strand, within speE at 1601.921 kb on + strand, within speE at 1601.933 kb on - strand, within speE at 1601.933 kb on - strand, within speE at 1601.997 kb on + strand at 1601.997 kb on + strand at 1601.997 kb on + strand at 1601.998 kb on - strand at 1601.998 kb on - strand at 1602.040 kb on - strand at 1602.084 kb on - strand at 1602.084 kb on - strand at 1602.150 kb on + strand at 1602.150 kb on + strand at 1602.150 kb on + strand at 1602.192 kb on + strand, within speD at 1602.194 kb on + strand, within speD at 1602.194 kb on + strand, within speD at 1602.194 kb on + strand, within speD at 1602.195 kb on - strand, within speD at 1602.201 kb on + strand, within speD at 1602.201 kb on + strand, within speD at 1602.202 kb on - strand, within speD at 1602.204 kb on - strand, within speD at 1602.216 kb on + strand, within speD at 1602.217 kb on - strand, within speD at 1602.217 kb on - strand, within speD at 1602.275 kb on + strand, within speD at 1602.282 kb on - strand, within speD at 1602.327 kb on - strand, within speD at 1602.429 kb on - strand, within speD at 1602.429 kb on - strand, within speD at 1602.436 kb on + strand, within speD at 1602.437 kb on - strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.440 kb on + strand, within speD at 1602.441 kb on - strand, within speD at 1602.441 kb on - strand, within speD at 1602.441 kb on - strand, within speD at 1602.441 kb on - strand, within speD at 1602.441 kb on - strand, within speD at 1602.441 kb on - strand, within speD at 1602.441 kb on - strand, within speD at 1602.472 kb on + strand, within speD at 1602.472 kb on + strand, within speD at 1602.473 kb on - strand, within speD at 1602.571 kb on + strand, within speD at 1602.618 kb on - strand, within speD at 1602.629 kb on + strand, within speD at 1602.630 kb on - strand, within speD at 1602.644 kb on + strand, within speD at 1602.662 kb on + strand, within speD at 1602.662 kb on + strand, within speD at 1602.662 kb on + strand, within speD at 1602.662 kb on + strand, within speD at 1602.662 kb on + strand, within speD at 1602.662 kb on + strand, within speD at 1602.663 kb on - strand, within speD at 1602.663 kb on - strand, within speD at 1602.674 kb on + strand, within speD at 1602.687 kb on + strand, within speD at 1602.688 kb on - strand, within speD at 1602.761 kb on + strand, within speD at 1602.761 kb on + strand, within speD at 1602.762 kb on - strand, within speD at 1602.986 kb on - strand, within yacL at 1603.008 kb on - strand, within yacL at 1603.011 kb on - strand, within yacL at 1603.011 kb on - strand, within yacL at 1603.011 kb on - strand, within yacL
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,600,269 + cueO NIAGMN_08305 0.79 +0.1 1,600,318 + cueO NIAGMN_08305 0.82 -0.2 1,600,318 + cueO NIAGMN_08305 0.82 -0.9 1,600,318 + cueO NIAGMN_08305 0.82 +0.1 1,600,318 + cueO NIAGMN_08305 0.82 -0.3 1,600,319 - cueO NIAGMN_08305 0.83 -0.8 1,600,319 - cueO NIAGMN_08305 0.83 -0.4 1,600,319 - cueO NIAGMN_08305 0.83 -2.3 1,600,319 - cueO NIAGMN_08305 0.83 +0.1 1,600,319 - cueO NIAGMN_08305 0.83 -0.2 1,600,319 - cueO NIAGMN_08305 0.83 -0.1 1,600,319 - cueO NIAGMN_08305 0.83 +0.1 1,600,319 - cueO NIAGMN_08305 0.83 +0.1 1,600,322 + cueO NIAGMN_08305 0.83 +0.1 1,600,322 + cueO NIAGMN_08305 0.83 -1.1 1,600,322 + cueO NIAGMN_08305 0.83 +0.4 1,600,322 + cueO NIAGMN_08305 0.83 -1.0 1,600,323 - cueO NIAGMN_08305 0.83 +0.5 1,600,323 - cueO NIAGMN_08305 0.83 -1.2 1,600,323 - cueO NIAGMN_08305 0.83 -1.7 1,600,323 - cueO NIAGMN_08305 0.83 -0.4 1,600,384 + cueO NIAGMN_08305 0.87 +0.4 1,600,384 + cueO NIAGMN_08305 0.87 -0.3 1,600,385 - cueO NIAGMN_08305 0.87 +0.1 1,600,385 - cueO NIAGMN_08305 0.87 +0.1 1,600,385 - cueO NIAGMN_08305 0.87 -1.2 1,600,394 + cueO NIAGMN_08305 0.87 -1.5 1,600,395 - cueO NIAGMN_08305 0.87 -0.9 1,600,395 - cueO NIAGMN_08305 0.87 +0.1 1,600,395 - cueO NIAGMN_08305 0.87 -0.0 1,600,395 - cueO NIAGMN_08305 0.87 -0.6 1,600,418 + cueO NIAGMN_08305 0.89 +0.4 1,600,418 + cueO NIAGMN_08305 0.89 -0.6 1,600,418 + cueO NIAGMN_08305 0.89 -0.1 1,600,419 - cueO NIAGMN_08305 0.89 -0.7 1,600,436 + -0.9 1,600,437 - -1.6 1,600,437 - +0.9 1,600,440 + -0.0 1,600,440 + -1.2 1,600,440 + +0.0 1,600,441 - -0.6 1,600,589 + -1.4 1,600,590 - -0.2 1,600,590 - -0.6 1,600,590 - -0.5 1,600,590 - -0.2 1,600,590 - -0.9 1,600,593 + +0.0 1,600,639 + -0.8 1,600,639 + -2.4 1,600,639 + -2.1 1,600,640 - +0.5 1,600,640 - +0.4 1,600,640 - +0.2 1,600,682 - -0.6 1,600,692 - -0.9 1,600,692 - -0.3 1,600,692 - +1.7 1,600,727 + +0.2 1,600,727 + -0.1 1,600,728 - -0.5 1,600,736 + +0.8 1,600,736 + +0.5 1,600,747 + -1.9 1,600,747 + -0.9 1,600,747 + -1.3 1,600,748 - -0.5 1,600,815 + +0.5 1,600,816 - -0.9 1,600,856 - yacC NIAGMN_08310 0.20 -0.7 1,600,903 + yacC NIAGMN_08310 0.35 -1.3 1,600,967 + yacC NIAGMN_08310 0.56 +0.8 1,600,972 - yacC NIAGMN_08310 0.58 +1.5 1,600,972 - yacC NIAGMN_08310 0.58 -0.2 1,601,010 + yacC NIAGMN_08310 0.70 -1.1 1,601,091 + +0.1 1,601,092 - +0.1 1,601,092 - -0.9 1,601,126 + -1.4 1,601,127 - -1.4 1,601,127 - -0.3 1,601,153 + +0.1 1,601,153 + +0.8 1,601,157 + -0.3 1,601,157 + -0.2 1,601,200 - +0.1 1,601,200 - -0.1 1,601,239 + -0.1 1,601,273 + +0.8 1,601,273 + +1.0 1,601,273 + -0.0 1,601,274 - +1.7 1,601,283 + -0.7 1,601,344 + speE NIAGMN_08315 0.16 +0.1 1,601,345 - speE NIAGMN_08315 0.16 +0.2 1,601,362 + speE NIAGMN_08315 0.18 +0.0 1,601,363 - speE NIAGMN_08315 0.18 +0.7 1,601,365 + speE NIAGMN_08315 0.18 -0.3 1,601,390 + speE NIAGMN_08315 0.21 -0.1 1,601,390 + speE NIAGMN_08315 0.21 +1.3 1,601,391 - speE NIAGMN_08315 0.21 -0.7 1,601,391 - speE NIAGMN_08315 0.21 +0.3 1,601,391 - speE NIAGMN_08315 0.21 -0.3 1,601,394 + speE NIAGMN_08315 0.21 +3.0 1,601,394 + speE NIAGMN_08315 0.21 -0.6 1,601,394 + speE NIAGMN_08315 0.21 +0.7 1,601,394 + speE NIAGMN_08315 0.21 +0.7 1,601,395 - speE NIAGMN_08315 0.22 +0.3 1,601,395 - speE NIAGMN_08315 0.22 +0.1 1,601,395 - speE NIAGMN_08315 0.22 -0.4 1,601,395 - speE NIAGMN_08315 0.22 -0.8 1,601,501 + speE NIAGMN_08315 0.34 +0.2 1,601,565 + speE NIAGMN_08315 0.41 +0.7 1,601,565 + speE NIAGMN_08315 0.41 -1.1 1,601,566 - speE NIAGMN_08315 0.41 +0.4 1,601,566 - speE NIAGMN_08315 0.41 +1.7 1,601,579 + speE NIAGMN_08315 0.43 +2.7 1,601,592 + speE NIAGMN_08315 0.44 -0.2 1,601,672 + speE NIAGMN_08315 0.54 +0.6 1,601,672 + speE NIAGMN_08315 0.54 +0.6 1,601,842 - speE NIAGMN_08315 0.73 -0.9 1,601,884 - speE NIAGMN_08315 0.78 -0.3 1,601,886 + speE NIAGMN_08315 0.78 +0.5 1,601,921 + speE NIAGMN_08315 0.82 +0.9 1,601,921 + speE NIAGMN_08315 0.82 -0.7 1,601,933 - speE NIAGMN_08315 0.84 +1.7 1,601,933 - speE NIAGMN_08315 0.84 +1.3 1,601,997 + +1.1 1,601,997 + +0.3 1,601,997 + +0.1 1,601,998 - +0.1 1,601,998 - -1.3 1,602,040 - -0.0 1,602,084 - +1.0 1,602,084 - +1.3 1,602,150 + -1.1 1,602,150 + +0.1 1,602,150 + -0.7 1,602,192 + speD NIAGMN_08320 0.13 +2.0 1,602,194 + speD NIAGMN_08320 0.13 +0.9 1,602,194 + speD NIAGMN_08320 0.13 -0.6 1,602,194 + speD NIAGMN_08320 0.13 -0.3 1,602,195 - speD NIAGMN_08320 0.13 -0.3 1,602,201 + speD NIAGMN_08320 0.14 -1.2 1,602,201 + speD NIAGMN_08320 0.14 +0.5 1,602,202 - speD NIAGMN_08320 0.14 -0.3 1,602,204 - speD NIAGMN_08320 0.14 +2.7 1,602,216 + speD NIAGMN_08320 0.16 +0.3 1,602,217 - speD NIAGMN_08320 0.16 -0.1 1,602,217 - speD NIAGMN_08320 0.16 +0.7 1,602,275 + speD NIAGMN_08320 0.23 -1.6 1,602,282 - speD NIAGMN_08320 0.24 +0.7 1,602,327 - speD NIAGMN_08320 0.30 -0.9 1,602,429 - speD NIAGMN_08320 0.43 -0.1 1,602,429 - speD NIAGMN_08320 0.43 +0.9 1,602,436 + speD NIAGMN_08320 0.44 -2.3 1,602,437 - speD NIAGMN_08320 0.44 +1.7 1,602,440 + speD NIAGMN_08320 0.44 +0.4 1,602,440 + speD NIAGMN_08320 0.44 -0.6 1,602,440 + speD NIAGMN_08320 0.44 -0.1 1,602,440 + speD NIAGMN_08320 0.44 -1.1 1,602,440 + speD NIAGMN_08320 0.44 +0.3 1,602,440 + speD NIAGMN_08320 0.44 -1.4 1,602,440 + speD NIAGMN_08320 0.44 -0.5 1,602,440 + speD NIAGMN_08320 0.44 +0.5 1,602,440 + speD NIAGMN_08320 0.44 +1.7 1,602,440 + speD NIAGMN_08320 0.44 +0.1 1,602,440 + speD NIAGMN_08320 0.44 +0.0 1,602,440 + speD NIAGMN_08320 0.44 -0.1 1,602,440 + speD NIAGMN_08320 0.44 +0.7 1,602,441 - speD NIAGMN_08320 0.44 +0.3 1,602,441 - speD NIAGMN_08320 0.44 -0.2 1,602,441 - speD NIAGMN_08320 0.44 +0.1 1,602,441 - speD NIAGMN_08320 0.44 -0.1 1,602,441 - speD NIAGMN_08320 0.44 +2.7 1,602,441 - speD NIAGMN_08320 0.44 +0.7 1,602,441 - speD NIAGMN_08320 0.44 -0.2 1,602,472 + speD NIAGMN_08320 0.48 -0.1 1,602,472 + speD NIAGMN_08320 0.48 -0.3 1,602,473 - speD NIAGMN_08320 0.48 -0.3 1,602,571 + speD NIAGMN_08320 0.61 -0.3 1,602,618 - speD NIAGMN_08320 0.66 -1.1 1,602,629 + speD NIAGMN_08320 0.68 +0.0 1,602,630 - speD NIAGMN_08320 0.68 +0.7 1,602,644 + speD NIAGMN_08320 0.70 -1.8 1,602,662 + speD NIAGMN_08320 0.72 -0.8 1,602,662 + speD NIAGMN_08320 0.72 -0.1 1,602,662 + speD NIAGMN_08320 0.72 -0.1 1,602,662 + speD NIAGMN_08320 0.72 -0.0 1,602,662 + speD NIAGMN_08320 0.72 +0.4 1,602,662 + speD NIAGMN_08320 0.72 +0.7 1,602,663 - speD NIAGMN_08320 0.72 -1.1 1,602,663 - speD NIAGMN_08320 0.72 +0.0 1,602,674 + speD NIAGMN_08320 0.73 +0.1 1,602,687 + speD NIAGMN_08320 0.75 +1.7 1,602,688 - speD NIAGMN_08320 0.75 +1.7 1,602,761 + speD NIAGMN_08320 0.84 +1.1 1,602,761 + speD NIAGMN_08320 0.84 +0.3 1,602,762 - speD NIAGMN_08320 0.85 +0.4 1,602,986 - yacL NIAGMN_08325 0.18 +0.2 1,603,008 - yacL NIAGMN_08325 0.24 -1.3 1,603,011 - yacL NIAGMN_08325 0.25 -1.6 1,603,011 - yacL NIAGMN_08325 0.25 -0.5 1,603,011 - yacL NIAGMN_08325 0.25 +0.1
Or see this region's nucleotide sequence