Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07140

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and hyxA are separated by 56 nucleotideshyxA and NIAGMN_07145 are separated by 41 nucleotides NIAGMN_07130: tnp-IS3 - IS3 family transposase, at 1,370,451 to 1,370,777 tnp-IS3 NIAGMN_07135: tnp-IS3 - IS3 family transposase, at 1,370,777 to 1,371,664 tnp-IS3 NIAGMN_07140: hyxA - protein HyxA, at 1,371,721 to 1,372,482 hyxA NIAGMN_07145: NIAGMN_07145 - Adhesin, at 1,372,524 to 1,373,618 _07145 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -1 0 1 2at 1371.674 kb on + strandat 1371.756 kb on - strandat 1371.776 kb on + strandat 1371.776 kb on + strandat 1371.776 kb on + strandat 1371.777 kb on - strandat 1371.777 kb on - strandat 1371.801 kb on + strand, within hyxAat 1371.801 kb on + strand, within hyxAat 1371.828 kb on - strand, within hyxAat 1371.828 kb on - strand, within hyxAat 1371.979 kb on - strand, within hyxAat 1372.101 kb on + strand, within hyxAat 1372.112 kb on - strand, within hyxAat 1372.112 kb on - strand, within hyxAat 1372.256 kb on + strand, within hyxAat 1372.265 kb on + strand, within hyxAat 1372.266 kb on - strand, within hyxAat 1372.266 kb on - strand, within hyxAat 1372.350 kb on + strand, within hyxAat 1372.350 kb on + strand, within hyxAat 1372.416 kb on + strandat 1373.026 kb on + strand, within NIAGMN_07145at 1373.178 kb on - strand, within NIAGMN_07145at 1373.204 kb on + strand, within NIAGMN_07145at 1373.401 kb on + strand, within NIAGMN_07145at 1373.424 kb on + strand, within NIAGMN_07145at 1373.435 kb on + strand, within NIAGMN_07145at 1373.442 kb on + strand, within NIAGMN_07145at 1373.443 kb on - strand, within NIAGMN_07145at 1373.444 kb on + strand, within NIAGMN_07145at 1373.475 kb on - strand, within NIAGMN_07145

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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1,371,674 + -0.5
1,371,756 - -0.6
1,371,776 + +1.0
1,371,776 + -1.1
1,371,776 + -0.0
1,371,777 - -1.1
1,371,777 - +0.7
1,371,801 + hyxA NIAGMN_07140 0.10 -0.5
1,371,801 + hyxA NIAGMN_07140 0.10 +1.2
1,371,828 - hyxA NIAGMN_07140 0.14 -1.1
1,371,828 - hyxA NIAGMN_07140 0.14 -1.0
1,371,979 - hyxA NIAGMN_07140 0.34 +0.7
1,372,101 + hyxA NIAGMN_07140 0.50 -0.7
1,372,112 - hyxA NIAGMN_07140 0.51 -0.1
1,372,112 - hyxA NIAGMN_07140 0.51 +0.1
1,372,256 + hyxA NIAGMN_07140 0.70 +1.7
1,372,265 + hyxA NIAGMN_07140 0.71 -1.0
1,372,266 - hyxA NIAGMN_07140 0.72 +1.2
1,372,266 - hyxA NIAGMN_07140 0.72 -0.7
1,372,350 + hyxA NIAGMN_07140 0.83 -0.2
1,372,350 + hyxA NIAGMN_07140 0.83 +0.6
1,372,416 + +0.6
1,373,026 + NIAGMN_07145 0.46 -0.9
1,373,178 - NIAGMN_07145 0.60 +0.7
1,373,204 + NIAGMN_07145 0.62 +0.9
1,373,401 + NIAGMN_07145 0.80 -0.3
1,373,424 + NIAGMN_07145 0.82 +2.5
1,373,435 + NIAGMN_07145 0.83 -1.7
1,373,442 + NIAGMN_07145 0.84 -0.3
1,373,443 - NIAGMN_07145 0.84 -0.9
1,373,444 + NIAGMN_07145 0.84 -0.1
1,373,475 - NIAGMN_07145 0.87 +1.7

Or see this region's nucleotide sequence