Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and hyxA are separated by 56 nucleotides hyxA and NIAGMN_07145 are separated by 41 nucleotides
NIAGMN_07130: tnp-IS3 - IS3 family transposase, at 1,370,451 to 1,370,777
tnp-IS3
NIAGMN_07135: tnp-IS3 - IS3 family transposase, at 1,370,777 to 1,371,664
tnp-IS3
NIAGMN_07140: hyxA - protein HyxA, at 1,371,721 to 1,372,482
hyxA
NIAGMN_07145: NIAGMN_07145 - Adhesin, at 1,372,524 to 1,373,618
_07145
Position (kb)
1371
1372
1373 Strain fitness (log2 ratio)
-1
0
1
2 at 1371.674 kb on + strand at 1371.756 kb on - strand at 1371.776 kb on + strand at 1371.776 kb on + strand at 1371.776 kb on + strand at 1371.777 kb on - strand at 1371.777 kb on - strand at 1371.801 kb on + strand, within hyxA at 1371.801 kb on + strand, within hyxA at 1371.828 kb on - strand, within hyxA at 1371.828 kb on - strand, within hyxA at 1371.979 kb on - strand, within hyxA at 1372.101 kb on + strand, within hyxA at 1372.112 kb on - strand, within hyxA at 1372.112 kb on - strand, within hyxA at 1372.256 kb on + strand, within hyxA at 1372.265 kb on + strand, within hyxA at 1372.266 kb on - strand, within hyxA at 1372.266 kb on - strand, within hyxA at 1372.350 kb on + strand, within hyxA at 1372.350 kb on + strand, within hyxA at 1372.416 kb on + strand at 1373.026 kb on + strand, within NIAGMN_07145 at 1373.178 kb on - strand, within NIAGMN_07145 at 1373.204 kb on + strand, within NIAGMN_07145 at 1373.401 kb on + strand, within NIAGMN_07145 at 1373.424 kb on + strand, within NIAGMN_07145 at 1373.435 kb on + strand, within NIAGMN_07145 at 1373.442 kb on + strand, within NIAGMN_07145 at 1373.443 kb on - strand, within NIAGMN_07145 at 1373.444 kb on + strand, within NIAGMN_07145 at 1373.475 kb on - strand, within NIAGMN_07145
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 1,371,674 + -0.5 1,371,756 - -0.6 1,371,776 + +1.0 1,371,776 + -1.1 1,371,776 + -0.0 1,371,777 - -1.1 1,371,777 - +0.7 1,371,801 + hyxA NIAGMN_07140 0.10 -0.5 1,371,801 + hyxA NIAGMN_07140 0.10 +1.2 1,371,828 - hyxA NIAGMN_07140 0.14 -1.1 1,371,828 - hyxA NIAGMN_07140 0.14 -1.0 1,371,979 - hyxA NIAGMN_07140 0.34 +0.7 1,372,101 + hyxA NIAGMN_07140 0.50 -0.7 1,372,112 - hyxA NIAGMN_07140 0.51 -0.1 1,372,112 - hyxA NIAGMN_07140 0.51 +0.1 1,372,256 + hyxA NIAGMN_07140 0.70 +1.7 1,372,265 + hyxA NIAGMN_07140 0.71 -1.0 1,372,266 - hyxA NIAGMN_07140 0.72 +1.2 1,372,266 - hyxA NIAGMN_07140 0.72 -0.7 1,372,350 + hyxA NIAGMN_07140 0.83 -0.2 1,372,350 + hyxA NIAGMN_07140 0.83 +0.6 1,372,416 + +0.6 1,373,026 + NIAGMN_07145 0.46 -0.9 1,373,178 - NIAGMN_07145 0.60 +0.7 1,373,204 + NIAGMN_07145 0.62 +0.9 1,373,401 + NIAGMN_07145 0.80 -0.3 1,373,424 + NIAGMN_07145 0.82 +2.5 1,373,435 + NIAGMN_07145 0.83 -1.7 1,373,442 + NIAGMN_07145 0.84 -0.3 1,373,443 - NIAGMN_07145 0.84 -0.9 1,373,444 + NIAGMN_07145 0.84 -0.1 1,373,475 - NIAGMN_07145 0.87 +1.7
Or see this region's nucleotide sequence