Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04765

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmodF and galT are separated by 261 nucleotidesgalT and galT are separated by 9 nucleotides NIAGMN_04760: modF - molybdate ABC transporter ATP-binding protein ModF, at 863,379 to 864,851 modF NIAGMN_04765: galT - galactose-1-phosphate uridylyltransferase, at 865,113 to 866,129 galT NIAGMN_04770: galT - galactose-1-phosphate uridylyltransferase, at 866,139 to 867,185 galT Position (kb) 865 866 867Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 864.187 kb on - strand, within modFat 864.189 kb on - strand, within modFat 864.206 kb on + strand, within modFat 864.207 kb on - strand, within modFat 864.207 kb on - strand, within modFat 864.210 kb on - strand, within modFat 864.216 kb on - strand, within modFat 864.216 kb on - strand, within modFat 864.283 kb on + strand, within modFat 864.284 kb on - strand, within modFat 864.435 kb on - strand, within modFat 864.438 kb on - strand, within modFat 864.578 kb on + strand, within modFat 864.578 kb on + strand, within modFat 864.579 kb on - strand, within modFat 864.696 kb on - strand, within modFat 864.782 kb on + strandat 864.782 kb on + strandat 864.828 kb on + strandat 864.828 kb on + strandat 864.845 kb on - strandat 864.850 kb on - strandat 865.070 kb on + strandat 865.082 kb on - strandat 865.093 kb on + strandat 865.214 kb on + strandat 865.221 kb on - strand, within galTat 865.221 kb on - strand, within galTat 865.232 kb on - strand, within galTat 865.398 kb on + strand, within galTat 865.519 kb on - strand, within galTat 865.558 kb on - strand, within galTat 865.558 kb on - strand, within galTat 865.713 kb on - strand, within galTat 865.719 kb on + strand, within galTat 865.719 kb on + strand, within galTat 865.720 kb on - strand, within galTat 865.809 kb on + strand, within galTat 865.809 kb on + strand, within galTat 865.810 kb on - strand, within galTat 865.820 kb on - strand, within galTat 865.820 kb on - strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.887 kb on + strand, within galTat 865.888 kb on - strand, within galTat 865.888 kb on - strand, within galTat 865.888 kb on - strand, within galTat 865.931 kb on + strand, within galTat 865.964 kb on + strand, within galTat 865.965 kb on - strand, within galTat 865.968 kb on + strand, within galTat 865.968 kb on + strand, within galTat 865.968 kb on + strand, within galTat 865.968 kb on + strand, within galTat 865.969 kb on - strand, within galTat 866.008 kb on - strand, within galTat 866.178 kb on + strandat 866.225 kb on + strandat 866.309 kb on + strand, within galTat 866.309 kb on + strand, within galTat 866.344 kb on - strand, within galTat 866.356 kb on - strand, within galTat 866.356 kb on - strand, within galTat 866.356 kb on - strand, within galTat 866.486 kb on + strand, within galTat 866.654 kb on + strand, within galTat 866.654 kb on + strand, within galTat 866.655 kb on - strand, within galTat 866.740 kb on - strand, within galTat 866.765 kb on + strand, within galTat 866.812 kb on - strand, within galTat 866.965 kb on - strand, within galTat 866.969 kb on + strand, within galTat 866.969 kb on + strand, within galTat 866.970 kb on - strand, within galTat 866.970 kb on - strand, within galTat 866.994 kb on - strand, within galTat 867.065 kb on - strand, within galTat 867.069 kb on - strand, within galTat 867.069 kb on - strand, within galTat 867.075 kb on - strand, within galT

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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864,187 - modF NIAGMN_04760 0.55 +3.3
864,189 - modF NIAGMN_04760 0.55 +1.4
864,206 + modF NIAGMN_04760 0.56 +0.7
864,207 - modF NIAGMN_04760 0.56 -0.9
864,207 - modF NIAGMN_04760 0.56 +1.3
864,210 - modF NIAGMN_04760 0.56 -0.1
864,216 - modF NIAGMN_04760 0.57 -0.5
864,216 - modF NIAGMN_04760 0.57 +0.4
864,283 + modF NIAGMN_04760 0.61 +0.7
864,284 - modF NIAGMN_04760 0.61 +0.1
864,435 - modF NIAGMN_04760 0.72 +0.7
864,438 - modF NIAGMN_04760 0.72 -0.1
864,578 + modF NIAGMN_04760 0.81 +2.7
864,578 + modF NIAGMN_04760 0.81 -1.7
864,579 - modF NIAGMN_04760 0.81 -0.3
864,696 - modF NIAGMN_04760 0.89 -0.6
864,782 + -1.3
864,782 + -1.2
864,828 + +1.7
864,828 + +0.1
864,845 - +0.7
864,850 - -0.9
865,070 + -1.3
865,082 - +0.1
865,093 + -0.5
865,214 + -1.1
865,221 - galT NIAGMN_04765 0.11 -0.3
865,221 - galT NIAGMN_04765 0.11 +0.1
865,232 - galT NIAGMN_04765 0.12 -1.7
865,398 + galT NIAGMN_04765 0.28 +0.1
865,519 - galT NIAGMN_04765 0.40 -1.9
865,558 - galT NIAGMN_04765 0.44 -0.3
865,558 - galT NIAGMN_04765 0.44 +0.7
865,713 - galT NIAGMN_04765 0.59 -2.5
865,719 + galT NIAGMN_04765 0.60 -1.6
865,719 + galT NIAGMN_04765 0.60 -4.9
865,720 - galT NIAGMN_04765 0.60 -1.3
865,809 + galT NIAGMN_04765 0.68 -1.7
865,809 + galT NIAGMN_04765 0.68 -1.3
865,810 - galT NIAGMN_04765 0.69 +0.7
865,820 - galT NIAGMN_04765 0.70 -1.3
865,820 - galT NIAGMN_04765 0.70 -0.9
865,887 + galT NIAGMN_04765 0.76 +0.7
865,887 + galT NIAGMN_04765 0.76 -1.0
865,887 + galT NIAGMN_04765 0.76 -3.5
865,887 + galT NIAGMN_04765 0.76 -0.9
865,887 + galT NIAGMN_04765 0.76 -0.3
865,888 - galT NIAGMN_04765 0.76 -1.5
865,888 - galT NIAGMN_04765 0.76 -2.3
865,888 - galT NIAGMN_04765 0.76 +0.7
865,931 + galT NIAGMN_04765 0.80 -0.6
865,964 + galT NIAGMN_04765 0.84 -1.6
865,965 - galT NIAGMN_04765 0.84 +0.1
865,968 + galT NIAGMN_04765 0.84 -1.3
865,968 + galT NIAGMN_04765 0.84 -3.0
865,968 + galT NIAGMN_04765 0.84 -0.3
865,968 + galT NIAGMN_04765 0.84 -2.5
865,969 - galT NIAGMN_04765 0.84 -0.3
866,008 - galT NIAGMN_04765 0.88 -0.9
866,178 + -0.6
866,225 + -1.9
866,309 + galT NIAGMN_04770 0.16 +0.7
866,309 + galT NIAGMN_04770 0.16 +0.7
866,344 - galT NIAGMN_04770 0.20 +0.7
866,356 - galT NIAGMN_04770 0.21 -1.3
866,356 - galT NIAGMN_04770 0.21 +0.5
866,356 - galT NIAGMN_04770 0.21 +0.0
866,486 + galT NIAGMN_04770 0.33 +2.5
866,654 + galT NIAGMN_04770 0.49 +0.5
866,654 + galT NIAGMN_04770 0.49 -1.4
866,655 - galT NIAGMN_04770 0.49 +0.7
866,740 - galT NIAGMN_04770 0.57 +0.4
866,765 + galT NIAGMN_04770 0.60 +0.1
866,812 - galT NIAGMN_04770 0.64 -0.9
866,965 - galT NIAGMN_04770 0.79 +0.4
866,969 + galT NIAGMN_04770 0.79 -0.3
866,969 + galT NIAGMN_04770 0.79 +2.7
866,970 - galT NIAGMN_04770 0.79 -0.9
866,970 - galT NIAGMN_04770 0.79 +0.6
866,994 - galT NIAGMN_04770 0.82 +0.7
867,065 - galT NIAGMN_04770 0.88 +0.2
867,069 - galT NIAGMN_04770 0.89 -0.6
867,069 - galT NIAGMN_04770 0.89 -0.7
867,075 - galT NIAGMN_04770 0.89 -0.3

Or see this region's nucleotide sequence