Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03705

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntureG and ureF are separated by 11 nucleotidesureF and ureE are separated by 0 nucleotidesureE and ureC are separated by 9 nucleotides NIAGMN_03695: ureG - urease accessory protein UreG, at 659,153 to 659,770 ureG NIAGMN_03700: ureF - Urease accessory protein UreF, at 659,782 to 660,456 ureF NIAGMN_03705: ureE - urease accessory protein UreE, at 660,457 to 660,921 ureE NIAGMN_03710: ureC - urease subunit alpha, at 660,931 to 662,634 ureC Position (kb) 660 661Strain fitness (log2 ratio) -2 -1 0 1 2at 659.832 kb on + strandat 660.086 kb on - strand, within ureFat 660.157 kb on - strand, within ureFat 660.204 kb on - strand, within ureFat 660.257 kb on - strand, within ureFat 660.507 kb on - strand, within ureEat 660.619 kb on + strand, within ureEat 660.673 kb on - strand, within ureEat 661.002 kb on + strandat 661.003 kb on - strandat 661.034 kb on - strandat 661.035 kb on + strandat 661.036 kb on - strandat 661.075 kb on + strandat 661.408 kb on - strand, within ureCat 661.408 kb on - strand, within ureCat 661.416 kb on - strand, within ureCat 661.416 kb on - strand, within ureCat 661.520 kb on - strand, within ureCat 661.520 kb on - strand, within ureCat 661.526 kb on - strand, within ureCat 661.723 kb on - strand, within ureCat 661.724 kb on + strand, within ureCat 661.818 kb on + strand, within ureCat 661.827 kb on + strand, within ureCat 661.861 kb on - strand, within ureCat 661.891 kb on - strand, within ureC

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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659,832 + +0.3
660,086 - ureF NIAGMN_03700 0.45 +1.4
660,157 - ureF NIAGMN_03700 0.56 -1.1
660,204 - ureF NIAGMN_03700 0.63 +0.3
660,257 - ureF NIAGMN_03700 0.70 +2.3
660,507 - ureE NIAGMN_03705 0.11 +0.2
660,619 + ureE NIAGMN_03705 0.35 +0.4
660,673 - ureE NIAGMN_03705 0.46 -1.0
661,002 + +0.7
661,003 - -0.4
661,034 - -0.6
661,035 + +0.9
661,036 - -2.3
661,075 + +0.7
661,408 - ureC NIAGMN_03710 0.28 +0.7
661,408 - ureC NIAGMN_03710 0.28 -0.3
661,416 - ureC NIAGMN_03710 0.28 +0.7
661,416 - ureC NIAGMN_03710 0.28 +1.7
661,520 - ureC NIAGMN_03710 0.35 -2.3
661,520 - ureC NIAGMN_03710 0.35 +0.9
661,526 - ureC NIAGMN_03710 0.35 -1.7
661,723 - ureC NIAGMN_03710 0.46 +0.3
661,724 + ureC NIAGMN_03710 0.47 +1.7
661,818 + ureC NIAGMN_03710 0.52 +0.2
661,827 + ureC NIAGMN_03710 0.53 +0.4
661,861 - ureC NIAGMN_03710 0.55 +0.2
661,891 - ureC NIAGMN_03710 0.56 +0.2

Or see this region's nucleotide sequence