Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdN and NIAGMN_03445 are separated by 500 nucleotides NIAGMN_03445 and NIAGMN_03450 overlap by 4 nucleotides NIAGMN_03450 and fhaC are separated by 240 nucleotides
NIAGMN_03440: ybdN - phosphoadenosine phosphosulfate reductase, at 615,502 to 616,734
ybdN
NIAGMN_03445: NIAGMN_03445 - helicase, at 617,235 to 619,403
_03445
NIAGMN_03450: NIAGMN_03450 - Putative UvrD/REP helicase-like protein, at 619,400 to 619,915
_03450
NIAGMN_03455: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 620,156 to 621,202
fhaC
Position (kb) 617
618
619
620 Strain fitness (log2 ratio) -1
0
1
2 at 616.476 kb on - strand, within ybdN at 616.498 kb on - strand, within ybdN at 616.634 kb on - strand at 616.927 kb on - strand at 617.120 kb on + strand at 617.428 kb on + strand at 617.429 kb on - strand at 617.460 kb on - strand, within NIAGMN_03445 at 617.470 kb on - strand, within NIAGMN_03445 at 617.763 kb on - strand, within NIAGMN_03445 at 618.015 kb on - strand, within NIAGMN_03445 at 618.015 kb on - strand, within NIAGMN_03445 at 618.136 kb on - strand, within NIAGMN_03445 at 618.275 kb on + strand, within NIAGMN_03445 at 618.398 kb on + strand, within NIAGMN_03445 at 618.501 kb on - strand, within NIAGMN_03445 at 618.878 kb on - strand, within NIAGMN_03445 at 619.293 kb on - strand at 620.031 kb on + strand at 620.104 kb on + strand at 620.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 616,476 - ybdN NIAGMN_03440 0.79 +0.2 616,498 - ybdN NIAGMN_03440 0.81 +0.5 616,634 - +0.2 616,927 - -1.0 617,120 + -1.3 617,428 + +0.7 617,429 - -0.3 617,460 - NIAGMN_03445 0.10 -0.4 617,470 - NIAGMN_03445 0.11 +1.7 617,763 - NIAGMN_03445 0.24 +0.1 618,015 - NIAGMN_03445 0.36 -0.6 618,015 - NIAGMN_03445 0.36 +2.0 618,136 - NIAGMN_03445 0.42 +1.0 618,275 + NIAGMN_03445 0.48 +1.7 618,398 + NIAGMN_03445 0.54 +0.4 618,501 - NIAGMN_03445 0.58 -0.9 618,878 - NIAGMN_03445 0.76 +1.3 619,293 - -1.1 620,031 + +0.4 620,104 + +0.5 620,185 + -1.0
Or see this region's nucleotide sequence