Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgL and fliD are separated by 265 nucleotides fliD and fliS are separated by 24 nucleotides fliS and fliT overlap by 1 nucleotides fliT and amyA are separated by 77 nucleotides
NIAGMN_02275: flgL - flagellin FliC, at 399,968 to 401,725
flgL
NIAGMN_02280: fliD - flagellar filament capping protein FliD, at 401,991 to 403,388
fliD
NIAGMN_02285: fliS - flagellar export chaperone FliS, at 403,413 to 403,823
fliS
NIAGMN_02290: fliT - flagella biosynthesis regulatory protein FliT, at 403,823 to 404,188
fliT
NIAGMN_02295: amyA - alpha-amylase, at 404,266 to 405,753
amyA
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -2
-1
0
1 at 401.133 kb on - strand, within flgL at 401.154 kb on - strand, within flgL at 401.426 kb on - strand, within flgL at 401.761 kb on + strand at 401.872 kb on - strand at 402.034 kb on + strand at 402.135 kb on - strand, within fliD at 402.584 kb on - strand, within fliD at 402.902 kb on + strand, within fliD at 403.099 kb on + strand, within fliD at 403.194 kb on - strand, within fliD at 403.239 kb on - strand, within fliD at 403.348 kb on - strand at 403.351 kb on + strand at 403.377 kb on - strand at 403.386 kb on + strand at 403.416 kb on + strand at 403.441 kb on - strand at 403.504 kb on + strand, within fliS at 403.683 kb on + strand, within fliS at 403.683 kb on + strand, within fliS at 403.683 kb on + strand, within fliS at 403.683 kb on + strand, within fliS at 403.684 kb on - strand, within fliS at 403.684 kb on - strand, within fliS at 403.685 kb on + strand, within fliS at 403.940 kb on + strand, within fliT at 403.940 kb on + strand, within fliT at 404.238 kb on + strand at 404.371 kb on - strand at 404.376 kb on + strand at 404.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 401,133 - flgL NIAGMN_02275 0.66 -0.9 401,154 - flgL NIAGMN_02275 0.67 +0.0 401,426 - flgL NIAGMN_02275 0.83 +0.5 401,761 + +0.4 401,872 - +1.1 402,034 + -2.1 402,135 - fliD NIAGMN_02280 0.10 -1.0 402,584 - fliD NIAGMN_02280 0.42 -0.9 402,902 + fliD NIAGMN_02280 0.65 -2.5 403,099 + fliD NIAGMN_02280 0.79 -1.5 403,194 - fliD NIAGMN_02280 0.86 +0.7 403,239 - fliD NIAGMN_02280 0.89 -0.1 403,348 - +1.7 403,351 + +1.1 403,377 - -0.0 403,386 + +1.1 403,416 + +0.6 403,441 - -0.0 403,504 + fliS NIAGMN_02285 0.22 -0.8 403,683 + fliS NIAGMN_02285 0.66 -0.3 403,683 + fliS NIAGMN_02285 0.66 -1.1 403,683 + fliS NIAGMN_02285 0.66 +1.6 403,683 + fliS NIAGMN_02285 0.66 -0.4 403,684 - fliS NIAGMN_02285 0.66 +0.1 403,684 - fliS NIAGMN_02285 0.66 +0.3 403,685 + fliS NIAGMN_02285 0.66 +0.4 403,940 + fliT NIAGMN_02290 0.32 +0.4 403,940 + fliT NIAGMN_02290 0.32 +1.7 404,238 + -0.3 404,371 - +1.7 404,376 + +0.8 404,377 - +1.7
Or see this region's nucleotide sequence