Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01410

Experiment: EV240

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdgcP and yoaJ are separated by 310 nucleotidesyoaJ and yeaQ are separated by 58 nucleotidesyeaQ and yoaG are separated by 146 nucleotidesyoaG and yeaR are separated by 3 nucleotides NIAGMN_01405: dgcP - Diguanylate cyclase DgcP, at 254,902 to 255,750 dgcP NIAGMN_01410: yoaJ - protein YoaJ, at 256,061 to 256,135 yoaJ NIAGMN_01415: yeaQ - UPF0410 protein YeaQ, at 256,194 to 256,442 yeaQ NIAGMN_01420: yoaG - Protein YoaG, at 256,589 to 256,771 yoaG NIAGMN_01425: yeaR - Uncharacterized protein YeaR, at 256,775 to 257,134 yeaR Position (kb) 256 257Strain fitness (log2 ratio) -1 0 1at 255.358 kb on + strand, within dgcPat 255.360 kb on + strand, within dgcPat 255.803 kb on + strandat 255.933 kb on - strandat 255.988 kb on + strandat 255.989 kb on - strandat 256.222 kb on - strand, within yeaQat 256.497 kb on - strandat 256.756 kb on - strandat 256.857 kb on + strand, within yeaRat 256.862 kb on - strand, within yeaR

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Per-strain Table

Position Strand Gene LocusTag Fraction EV240
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255,358 + dgcP NIAGMN_01405 0.54 -0.0
255,360 + dgcP NIAGMN_01405 0.54 -0.4
255,803 + -0.1
255,933 - -0.6
255,988 + +0.3
255,989 - -0.5
256,222 - yeaQ NIAGMN_01415 0.11 +1.7
256,497 - +0.1
256,756 - -0.9
256,857 + yeaR NIAGMN_01425 0.23 +0.0
256,862 - yeaR NIAGMN_01425 0.24 +1.3

Or see this region's nucleotide sequence