Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfM and asr are separated by 423 nucleotides asr and ydgU are separated by 92 nucleotides ydgU and ydgD are separated by 99 nucleotides ydgD and mdtI are separated by 38 nucleotides
NIAGMN_00345: ynfM - Inner membrane transport protein YnfM, at 47,778 to 49,031
ynfM
NIAGMN_00350: asr - acid resistance repetitive basic protein Asr, at 49,455 to 49,763
asr
NIAGMN_00355: ydgU - Uncharacterized protein YdgU, at 49,856 to 49,939
ydgU
NIAGMN_00360: ydgD - Uncharacterized serine protease YdgD, at 50,039 to 50,860
ydgD
NIAGMN_00365: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 50,899 to 51,228
mdtI
Position (kb) 49
50 Strain fitness (log2 ratio) -1
0
1
2
3 at 48.889 kb on - strand, within ynfM at 48.935 kb on + strand at 48.935 kb on + strand at 48.935 kb on + strand at 49.071 kb on - strand at 49.096 kb on - strand at 49.158 kb on + strand at 49.160 kb on + strand at 49.160 kb on + strand at 49.161 kb on - strand at 49.165 kb on - strand at 49.165 kb on - strand at 49.302 kb on - strand at 49.338 kb on + strand at 49.396 kb on + strand at 49.397 kb on - strand at 49.465 kb on + strand at 49.985 kb on + strand at 50.045 kb on - strand at 50.449 kb on - strand, within ydgD at 50.494 kb on + strand, within ydgD at 50.495 kb on - strand, within ydgD at 50.624 kb on + strand, within ydgD at 50.624 kb on + strand, within ydgD
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 48,889 - ynfM NIAGMN_00345 0.89 -0.1 48,935 + +0.1 48,935 + +0.2 48,935 + -0.9 49,071 - +1.1 49,096 - -0.9 49,158 + -0.2 49,160 + +1.3 49,160 + -0.6 49,161 - -0.3 49,165 - +0.7 49,165 - -0.9 49,302 - +0.7 49,338 + +0.1 49,396 + -0.5 49,397 - +0.2 49,465 + -0.6 49,985 + +3.0 50,045 - +0.5 50,449 - ydgD NIAGMN_00360 0.50 -0.6 50,494 + ydgD NIAGMN_00360 0.55 +0.9 50,495 - ydgD NIAGMN_00360 0.55 -0.2 50,624 + ydgD NIAGMN_00360 0.71 +0.5 50,624 + ydgD NIAGMN_00360 0.71 +0.1
Or see this region's nucleotide sequence