Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05336

Experiment: NAG 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05335 and BACOVA_05336 are separated by 15 nucleotidesBACOVA_05336 and BACOVA_05337 are separated by 14 nucleotidesBACOVA_05337 and BACOVA_05338 are separated by 52 nucleotides BACOVA_05335: BACOVA_05335 - GroES-like protein, at 820,210 to 821,352 _05335 BACOVA_05336: BACOVA_05336 - hypothetical protein, at 821,368 to 821,844 _05336 BACOVA_05337: BACOVA_05337 - RNA methyltransferase, TrmH family, at 821,859 to 822,701 _05337 BACOVA_05338: BACOVA_05338 - tRNA modification GTPase TrmE, at 822,754 to 824,151 _05338 Position (kb) 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 820.376 kb on + strand, within BACOVA_05335at 820.401 kb on - strand, within BACOVA_05335at 820.401 kb on - strand, within BACOVA_05335at 820.443 kb on + strand, within BACOVA_05335at 820.443 kb on + strand, within BACOVA_05335at 820.499 kb on + strand, within BACOVA_05335at 820.610 kb on - strand, within BACOVA_05335at 820.610 kb on - strand, within BACOVA_05335at 820.617 kb on + strand, within BACOVA_05335at 820.617 kb on + strand, within BACOVA_05335at 820.624 kb on - strand, within BACOVA_05335at 820.632 kb on + strand, within BACOVA_05335at 820.682 kb on - strand, within BACOVA_05335at 820.682 kb on - strand, within BACOVA_05335at 820.819 kb on - strand, within BACOVA_05335at 820.819 kb on - strand, within BACOVA_05335at 820.819 kb on - strand, within BACOVA_05335at 820.857 kb on + strand, within BACOVA_05335at 820.945 kb on + strand, within BACOVA_05335at 821.085 kb on + strand, within BACOVA_05335at 821.085 kb on + strand, within BACOVA_05335at 821.086 kb on - strand, within BACOVA_05335at 821.086 kb on - strand, within BACOVA_05335at 821.091 kb on + strand, within BACOVA_05335at 821.105 kb on + strand, within BACOVA_05335at 821.113 kb on + strand, within BACOVA_05335at 821.113 kb on + strand, within BACOVA_05335at 821.118 kb on + strand, within BACOVA_05335at 821.119 kb on - strand, within BACOVA_05335at 821.145 kb on + strand, within BACOVA_05335at 821.145 kb on + strand, within BACOVA_05335at 821.146 kb on - strand, within BACOVA_05335at 821.149 kb on + strand, within BACOVA_05335at 821.149 kb on + strand, within BACOVA_05335at 821.149 kb on + strand, within BACOVA_05335at 821.150 kb on - strand, within BACOVA_05335at 821.229 kb on + strand, within BACOVA_05335at 821.242 kb on - strandat 821.250 kb on + strandat 821.291 kb on - strandat 821.326 kb on - strandat 821.326 kb on - strandat 821.330 kb on + strandat 821.331 kb on - strandat 821.334 kb on + strandat 821.346 kb on + strandat 821.367 kb on + strandat 821.378 kb on + strandat 821.384 kb on + strandat 821.384 kb on + strandat 821.384 kb on + strandat 821.385 kb on - strandat 821.385 kb on - strandat 821.392 kb on - strandat 821.395 kb on - strandat 821.400 kb on + strandat 821.401 kb on - strandat 821.401 kb on - strandat 821.460 kb on + strand, within BACOVA_05336at 821.460 kb on + strand, within BACOVA_05336at 821.460 kb on + strand, within BACOVA_05336at 821.461 kb on - strand, within BACOVA_05336at 821.461 kb on - strand, within BACOVA_05336at 821.463 kb on + strand, within BACOVA_05336at 821.531 kb on - strand, within BACOVA_05336at 821.569 kb on + strand, within BACOVA_05336at 821.570 kb on - strand, within BACOVA_05336at 821.591 kb on - strand, within BACOVA_05336at 821.591 kb on - strand, within BACOVA_05336at 821.595 kb on + strand, within BACOVA_05336at 821.673 kb on + strand, within BACOVA_05336at 821.674 kb on - strand, within BACOVA_05336at 821.703 kb on - strand, within BACOVA_05336at 821.736 kb on - strand, within BACOVA_05336at 821.736 kb on - strand, within BACOVA_05336at 821.737 kb on + strand, within BACOVA_05336at 821.738 kb on - strand, within BACOVA_05336at 821.738 kb on - strand, within BACOVA_05336at 821.738 kb on - strand, within BACOVA_05336at 821.738 kb on - strand, within BACOVA_05336at 821.738 kb on - strand, within BACOVA_05336at 821.751 kb on + strand, within BACOVA_05336at 821.762 kb on - strand, within BACOVA_05336at 821.823 kb on + strandat 821.823 kb on + strandat 821.823 kb on + strandat 821.827 kb on + strandat 821.827 kb on + strandat 821.833 kb on - strandat 821.842 kb on + strandat 821.848 kb on + strandat 821.850 kb on + strandat 821.850 kb on + strandat 821.855 kb on - strandat 821.855 kb on - strandat 821.862 kb on + strandat 821.864 kb on + strandat 821.864 kb on + strandat 821.865 kb on - strandat 821.865 kb on - strandat 821.868 kb on + strandat 821.868 kb on + strandat 821.869 kb on - strandat 821.869 kb on - strandat 821.869 kb on - strandat 821.946 kb on + strand, within BACOVA_05337at 821.988 kb on + strand, within BACOVA_05337at 821.988 kb on + strand, within BACOVA_05337at 821.989 kb on - strand, within BACOVA_05337at 821.992 kb on + strand, within BACOVA_05337at 821.993 kb on - strand, within BACOVA_05337at 821.993 kb on - strand, within BACOVA_05337at 822.046 kb on - strand, within BACOVA_05337at 822.072 kb on + strand, within BACOVA_05337at 822.078 kb on - strand, within BACOVA_05337at 822.078 kb on - strand, within BACOVA_05337at 822.125 kb on + strand, within BACOVA_05337at 822.243 kb on - strand, within BACOVA_05337at 822.252 kb on + strand, within BACOVA_05337at 822.253 kb on - strand, within BACOVA_05337at 822.257 kb on + strand, within BACOVA_05337at 822.257 kb on + strand, within BACOVA_05337at 822.257 kb on + strand, within BACOVA_05337at 822.257 kb on + strand, within BACOVA_05337at 822.258 kb on - strand, within BACOVA_05337at 822.258 kb on - strand, within BACOVA_05337at 822.258 kb on - strand, within BACOVA_05337at 822.258 kb on - strand, within BACOVA_05337at 822.258 kb on - strand, within BACOVA_05337at 822.305 kb on + strand, within BACOVA_05337at 822.305 kb on + strand, within BACOVA_05337at 822.306 kb on - strand, within BACOVA_05337at 822.375 kb on + strand, within BACOVA_05337at 822.375 kb on + strand, within BACOVA_05337at 822.376 kb on - strand, within BACOVA_05337at 822.419 kb on + strand, within BACOVA_05337at 822.460 kb on + strand, within BACOVA_05337at 822.468 kb on + strand, within BACOVA_05337at 822.468 kb on + strand, within BACOVA_05337at 822.468 kb on + strand, within BACOVA_05337at 822.469 kb on - strand, within BACOVA_05337at 822.469 kb on - strand, within BACOVA_05337at 822.469 kb on - strand, within BACOVA_05337at 822.512 kb on + strand, within BACOVA_05337at 822.593 kb on + strand, within BACOVA_05337at 822.617 kb on + strandat 822.627 kb on + strandat 822.627 kb on + strandat 822.690 kb on + strandat 822.690 kb on + strandat 822.690 kb on + strandat 822.691 kb on - strandat 822.693 kb on - strandat 822.701 kb on + strandat 822.741 kb on + strandat 822.741 kb on + strandat 822.741 kb on + strandat 822.744 kb on + strandat 822.793 kb on + strandat 822.840 kb on + strandat 822.840 kb on + strandat 822.840 kb on + strandat 822.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
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820,376 + BACOVA_05335 0.15 -0.1
820,401 - BACOVA_05335 0.17 -0.9
820,401 - BACOVA_05335 0.17 -2.8
820,443 + BACOVA_05335 0.20 +0.9
820,443 + BACOVA_05335 0.20 +0.2
820,499 + BACOVA_05335 0.25 +0.3
820,610 - BACOVA_05335 0.35 -0.7
820,610 - BACOVA_05335 0.35 -1.4
820,617 + BACOVA_05335 0.36 -0.9
820,617 + BACOVA_05335 0.36 -0.2
820,624 - BACOVA_05335 0.36 +0.3
820,632 + BACOVA_05335 0.37 -1.4
820,682 - BACOVA_05335 0.41 +0.3
820,682 - BACOVA_05335 0.41 +0.1
820,819 - BACOVA_05335 0.53 +1.0
820,819 - BACOVA_05335 0.53 +0.3
820,819 - BACOVA_05335 0.53 -0.1
820,857 + BACOVA_05335 0.57 -0.2
820,945 + BACOVA_05335 0.64 +0.0
821,085 + BACOVA_05335 0.77 -2.1
821,085 + BACOVA_05335 0.77 +0.4
821,086 - BACOVA_05335 0.77 +1.3
821,086 - BACOVA_05335 0.77 -0.8
821,091 + BACOVA_05335 0.77 +1.9
821,105 + BACOVA_05335 0.78 +0.2
821,113 + BACOVA_05335 0.79 +0.8
821,113 + BACOVA_05335 0.79 -0.7
821,118 + BACOVA_05335 0.79 -0.4
821,119 - BACOVA_05335 0.80 +0.5
821,145 + BACOVA_05335 0.82 +0.0
821,145 + BACOVA_05335 0.82 -0.2
821,146 - BACOVA_05335 0.82 +0.0
821,149 + BACOVA_05335 0.82 -1.1
821,149 + BACOVA_05335 0.82 -0.7
821,149 + BACOVA_05335 0.82 -0.0
821,150 - BACOVA_05335 0.82 -0.9
821,229 + BACOVA_05335 0.89 +0.0
821,242 - +0.1
821,250 + +0.3
821,291 - +0.4
821,326 - +0.2
821,326 - +0.1
821,330 + -1.1
821,331 - +0.4
821,334 + -0.4
821,346 + -1.2
821,367 + +0.0
821,378 + -0.5
821,384 + -0.6
821,384 + -0.2
821,384 + +2.3
821,385 - -0.8
821,385 - -0.4
821,392 - -0.0
821,395 - +0.1
821,400 + +0.5
821,401 - +0.4
821,401 - +0.8
821,460 + BACOVA_05336 0.19 -0.5
821,460 + BACOVA_05336 0.19 -0.4
821,460 + BACOVA_05336 0.19 +0.6
821,461 - BACOVA_05336 0.19 +0.3
821,461 - BACOVA_05336 0.19 +1.3
821,463 + BACOVA_05336 0.20 +0.0
821,531 - BACOVA_05336 0.34 -0.0
821,569 + BACOVA_05336 0.42 +1.1
821,570 - BACOVA_05336 0.42 -0.6
821,591 - BACOVA_05336 0.47 -0.3
821,591 - BACOVA_05336 0.47 -0.2
821,595 + BACOVA_05336 0.48 +0.9
821,673 + BACOVA_05336 0.64 -1.1
821,674 - BACOVA_05336 0.64 +0.6
821,703 - BACOVA_05336 0.70 +0.5
821,736 - BACOVA_05336 0.77 -0.4
821,736 - BACOVA_05336 0.77 -0.8
821,737 + BACOVA_05336 0.77 -0.6
821,738 - BACOVA_05336 0.78 -0.1
821,738 - BACOVA_05336 0.78 -0.2
821,738 - BACOVA_05336 0.78 -0.7
821,738 - BACOVA_05336 0.78 -0.2
821,738 - BACOVA_05336 0.78 -0.4
821,751 + BACOVA_05336 0.80 -0.5
821,762 - BACOVA_05336 0.83 -1.0
821,823 + -1.2
821,823 + -0.5
821,823 + -0.2
821,827 + +0.3
821,827 + +0.3
821,833 - +1.1
821,842 + -0.7
821,848 + -0.5
821,850 + +1.0
821,850 + +0.6
821,855 - -0.3
821,855 - +0.0
821,862 + -0.8
821,864 + +0.4
821,864 + -0.7
821,865 - -0.2
821,865 - -0.4
821,868 + -0.8
821,868 + -0.0
821,869 - -0.2
821,869 - -0.7
821,869 - +0.8
821,946 + BACOVA_05337 0.10 -1.1
821,988 + BACOVA_05337 0.15 -0.1
821,988 + BACOVA_05337 0.15 -0.2
821,989 - BACOVA_05337 0.15 -0.1
821,992 + BACOVA_05337 0.16 +1.1
821,993 - BACOVA_05337 0.16 +0.9
821,993 - BACOVA_05337 0.16 +0.2
822,046 - BACOVA_05337 0.22 -1.0
822,072 + BACOVA_05337 0.25 +0.3
822,078 - BACOVA_05337 0.26 -0.7
822,078 - BACOVA_05337 0.26 +0.5
822,125 + BACOVA_05337 0.32 -0.4
822,243 - BACOVA_05337 0.46 -0.8
822,252 + BACOVA_05337 0.47 +1.6
822,253 - BACOVA_05337 0.47 -0.5
822,257 + BACOVA_05337 0.47 -1.4
822,257 + BACOVA_05337 0.47 -2.6
822,257 + BACOVA_05337 0.47 -0.5
822,257 + BACOVA_05337 0.47 -0.2
822,258 - BACOVA_05337 0.47 +0.5
822,258 - BACOVA_05337 0.47 -0.7
822,258 - BACOVA_05337 0.47 +0.8
822,258 - BACOVA_05337 0.47 -0.7
822,258 - BACOVA_05337 0.47 -0.6
822,305 + BACOVA_05337 0.53 +0.0
822,305 + BACOVA_05337 0.53 -0.7
822,306 - BACOVA_05337 0.53 -2.1
822,375 + BACOVA_05337 0.61 +0.3
822,375 + BACOVA_05337 0.61 +0.9
822,376 - BACOVA_05337 0.61 +0.2
822,419 + BACOVA_05337 0.66 +0.1
822,460 + BACOVA_05337 0.71 -0.6
822,468 + BACOVA_05337 0.72 +1.3
822,468 + BACOVA_05337 0.72 +0.7
822,468 + BACOVA_05337 0.72 -0.1
822,469 - BACOVA_05337 0.72 -1.3
822,469 - BACOVA_05337 0.72 +0.2
822,469 - BACOVA_05337 0.72 -1.2
822,512 + BACOVA_05337 0.77 -0.1
822,593 + BACOVA_05337 0.87 -1.2
822,617 + -0.3
822,627 + -0.0
822,627 + -0.4
822,690 + +1.2
822,690 + -0.3
822,690 + +1.5
822,691 - +1.1
822,693 - +0.2
822,701 + +0.8
822,741 + -0.9
822,741 + -0.5
822,741 + +0.8
822,744 + -0.7
822,793 + +0.2
822,840 + -0.2
822,840 + -1.2
822,840 + +1.2
822,841 - -0.1

Or see this region's nucleotide sequence