Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03837

Experiment: NAG 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03835 and BACOVA_03836 overlap by 20 nucleotidesBACOVA_03836 and BACOVA_03837 are separated by 253 nucleotidesBACOVA_03837 and BACOVA_03838 are separated by 0 nucleotidesBACOVA_03838 and BACOVA_03839 are separated by 26 nucleotides BACOVA_03835: BACOVA_03835 - outer membrane efflux protein, at 185,073 to 186,392 _03835 BACOVA_03836: BACOVA_03836 - transcriptional regulator, MarR family, at 186,373 to 186,813 _03836 BACOVA_03837: BACOVA_03837 - hypothetical protein, at 187,067 to 187,666 _03837 BACOVA_03838: BACOVA_03838 - hypothetical protein, at 187,667 to 187,963 _03838 BACOVA_03839: BACOVA_03839 - inner membrane protein CreD, at 187,990 to 189,342 _03839 Position (kb) 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1at 186.147 kb on + strand, within BACOVA_03835at 186.224 kb on + strand, within BACOVA_03835at 186.225 kb on - strand, within BACOVA_03835at 186.225 kb on - strand, within BACOVA_03835at 186.324 kb on + strandat 186.368 kb on - strandat 186.375 kb on - strandat 186.376 kb on + strandat 186.407 kb on - strandat 186.421 kb on - strand, within BACOVA_03836at 186.436 kb on + strand, within BACOVA_03836at 186.460 kb on + strand, within BACOVA_03836at 186.460 kb on + strand, within BACOVA_03836at 186.465 kb on - strand, within BACOVA_03836at 186.537 kb on + strand, within BACOVA_03836at 186.539 kb on + strand, within BACOVA_03836at 186.572 kb on + strand, within BACOVA_03836at 186.572 kb on + strand, within BACOVA_03836at 186.573 kb on - strand, within BACOVA_03836at 186.619 kb on - strand, within BACOVA_03836at 186.619 kb on - strand, within BACOVA_03836at 186.619 kb on - strand, within BACOVA_03836at 186.683 kb on - strand, within BACOVA_03836at 186.683 kb on - strand, within BACOVA_03836at 186.741 kb on + strand, within BACOVA_03836at 186.741 kb on + strand, within BACOVA_03836at 186.760 kb on - strand, within BACOVA_03836at 186.818 kb on + strandat 186.818 kb on + strandat 186.819 kb on - strandat 186.913 kb on - strandat 186.915 kb on - strandat 186.927 kb on + strandat 186.928 kb on - strandat 187.000 kb on + strandat 187.072 kb on + strandat 187.144 kb on - strand, within BACOVA_03837at 187.176 kb on - strand, within BACOVA_03837at 187.193 kb on + strand, within BACOVA_03837at 187.194 kb on - strand, within BACOVA_03837at 187.194 kb on - strand, within BACOVA_03837at 187.194 kb on - strand, within BACOVA_03837at 187.202 kb on - strand, within BACOVA_03837at 187.231 kb on - strand, within BACOVA_03837at 187.231 kb on - strand, within BACOVA_03837at 187.316 kb on - strand, within BACOVA_03837at 187.433 kb on + strand, within BACOVA_03837at 187.433 kb on + strand, within BACOVA_03837at 187.464 kb on + strand, within BACOVA_03837at 187.469 kb on + strand, within BACOVA_03837at 187.477 kb on - strand, within BACOVA_03837at 187.518 kb on + strand, within BACOVA_03837at 187.518 kb on + strand, within BACOVA_03837at 187.519 kb on - strand, within BACOVA_03837at 187.519 kb on - strand, within BACOVA_03837at 187.525 kb on - strand, within BACOVA_03837at 187.525 kb on - strand, within BACOVA_03837at 187.529 kb on + strand, within BACOVA_03837at 187.530 kb on - strand, within BACOVA_03837at 187.672 kb on - strandat 187.672 kb on - strandat 187.672 kb on - strandat 187.690 kb on + strandat 187.691 kb on - strandat 187.693 kb on + strandat 187.693 kb on + strandat 187.840 kb on + strand, within BACOVA_03838at 187.840 kb on + strand, within BACOVA_03838at 187.850 kb on - strand, within BACOVA_03838at 187.927 kb on + strand, within BACOVA_03838at 187.928 kb on - strand, within BACOVA_03838at 187.990 kb on - strandat 188.037 kb on + strandat 188.037 kb on + strandat 188.038 kb on - strandat 188.091 kb on - strandat 188.170 kb on - strand, within BACOVA_03839at 188.180 kb on + strand, within BACOVA_03839at 188.222 kb on - strand, within BACOVA_03839at 188.277 kb on + strand, within BACOVA_03839at 188.278 kb on - strand, within BACOVA_03839at 188.327 kb on + strand, within BACOVA_03839at 188.328 kb on - strand, within BACOVA_03839at 188.352 kb on + strand, within BACOVA_03839at 188.369 kb on + strand, within BACOVA_03839at 188.369 kb on + strand, within BACOVA_03839at 188.570 kb on + strand, within BACOVA_03839at 188.571 kb on - strand, within BACOVA_03839at 188.571 kb on - strand, within BACOVA_03839at 188.574 kb on + strand, within BACOVA_03839at 188.622 kb on + strand, within BACOVA_03839at 188.635 kb on + strand, within BACOVA_03839at 188.635 kb on + strand, within BACOVA_03839

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
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186,147 + BACOVA_03835 0.81 -0.2
186,224 + BACOVA_03835 0.87 +0.2
186,225 - BACOVA_03835 0.87 -0.7
186,225 - BACOVA_03835 0.87 -0.9
186,324 + -0.7
186,368 - +1.1
186,375 - +1.1
186,376 + -0.7
186,407 - +0.0
186,421 - BACOVA_03836 0.11 -0.3
186,436 + BACOVA_03836 0.14 -0.6
186,460 + BACOVA_03836 0.20 -0.1
186,460 + BACOVA_03836 0.20 -0.9
186,465 - BACOVA_03836 0.21 +0.4
186,537 + BACOVA_03836 0.37 +0.5
186,539 + BACOVA_03836 0.38 +0.5
186,572 + BACOVA_03836 0.45 -0.7
186,572 + BACOVA_03836 0.45 +0.5
186,573 - BACOVA_03836 0.45 +0.7
186,619 - BACOVA_03836 0.56 -0.6
186,619 - BACOVA_03836 0.56 -1.9
186,619 - BACOVA_03836 0.56 -1.1
186,683 - BACOVA_03836 0.70 -0.7
186,683 - BACOVA_03836 0.70 +1.1
186,741 + BACOVA_03836 0.83 -0.7
186,741 + BACOVA_03836 0.83 -1.8
186,760 - BACOVA_03836 0.88 -0.3
186,818 + -0.0
186,818 + +1.5
186,819 - -1.2
186,913 - -0.4
186,915 - -0.2
186,927 + +0.3
186,928 - -1.4
187,000 + +1.7
187,072 + -1.1
187,144 - BACOVA_03837 0.13 -0.6
187,176 - BACOVA_03837 0.18 -0.9
187,193 + BACOVA_03837 0.21 -0.6
187,194 - BACOVA_03837 0.21 -0.2
187,194 - BACOVA_03837 0.21 +0.9
187,194 - BACOVA_03837 0.21 +1.1
187,202 - BACOVA_03837 0.23 +0.4
187,231 - BACOVA_03837 0.27 -0.4
187,231 - BACOVA_03837 0.27 +0.3
187,316 - BACOVA_03837 0.41 -0.2
187,433 + BACOVA_03837 0.61 -0.6
187,433 + BACOVA_03837 0.61 +1.3
187,464 + BACOVA_03837 0.66 -2.2
187,469 + BACOVA_03837 0.67 -0.6
187,477 - BACOVA_03837 0.68 -2.2
187,518 + BACOVA_03837 0.75 -0.0
187,518 + BACOVA_03837 0.75 +0.6
187,519 - BACOVA_03837 0.75 +1.4
187,519 - BACOVA_03837 0.75 -1.7
187,525 - BACOVA_03837 0.76 -0.6
187,525 - BACOVA_03837 0.76 +0.0
187,529 + BACOVA_03837 0.77 -0.5
187,530 - BACOVA_03837 0.77 -0.2
187,672 - +1.3
187,672 - -1.4
187,672 - +1.3
187,690 + -1.4
187,691 - +1.1
187,693 + +0.7
187,693 + -0.7
187,840 + BACOVA_03838 0.58 +0.1
187,840 + BACOVA_03838 0.58 -0.7
187,850 - BACOVA_03838 0.62 +0.3
187,927 + BACOVA_03838 0.88 -0.2
187,928 - BACOVA_03838 0.88 -3.0
187,990 - -0.3
188,037 + -0.9
188,037 + +0.9
188,038 - -0.7
188,091 - +0.3
188,170 - BACOVA_03839 0.13 -0.8
188,180 + BACOVA_03839 0.14 -0.2
188,222 - BACOVA_03839 0.17 -1.1
188,277 + BACOVA_03839 0.21 +0.4
188,278 - BACOVA_03839 0.21 +0.5
188,327 + BACOVA_03839 0.25 -0.3
188,328 - BACOVA_03839 0.25 -0.3
188,352 + BACOVA_03839 0.27 +0.7
188,369 + BACOVA_03839 0.28 +1.1
188,369 + BACOVA_03839 0.28 +1.0
188,570 + BACOVA_03839 0.43 +0.0
188,571 - BACOVA_03839 0.43 +0.1
188,571 - BACOVA_03839 0.43 +0.6
188,574 + BACOVA_03839 0.43 +0.9
188,622 + BACOVA_03839 0.47 +0.4
188,635 + BACOVA_03839 0.48 +0.1
188,635 + BACOVA_03839 0.48 -1.0

Or see this region's nucleotide sequence