Experiment: NAG 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03063 and BACOVA_03064 are separated by 542 nucleotides BACOVA_03064 and BACOVA_03065 are separated by 15 nucleotides BACOVA_03065 and BACOVA_03066 are separated by 50 nucleotides BACOVA_03066 and BACOVA_03067 are separated by 110 nucleotides
BACOVA_03063: BACOVA_03063 - TonB-linked outer membrane protein, SusC/RagA family, at 133,527 to 136,613
_03063
BACOVA_03064: BACOVA_03064 - DNA-binding helix-turn-helix protein, at 137,156 to 137,575
_03064
BACOVA_03065: BACOVA_03065 - DNA-binding helix-turn-helix protein, at 137,591 to 137,995
_03065
BACOVA_03066: BACOVA_03066 - hypothetical protein, at 138,046 to 138,171
_03066
BACOVA_03067: BACOVA_03067 - hypothetical protein, at 138,282 to 139,298
_03067
Position (kb)
137
138 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 136.180 kb on - strand, within BACOVA_03063 at 136.221 kb on + strand, within BACOVA_03063 at 136.231 kb on - strand, within BACOVA_03063 at 136.293 kb on - strand, within BACOVA_03063 at 136.313 kb on - strand at 136.320 kb on - strand at 136.320 kb on - strand at 136.320 kb on - strand at 136.321 kb on + strand at 136.321 kb on + strand at 136.321 kb on + strand at 136.321 kb on + strand at 136.321 kb on + strand at 136.321 kb on + strand at 136.321 kb on + strand at 136.322 kb on - strand at 136.322 kb on - strand at 136.322 kb on - strand at 136.322 kb on - strand at 136.326 kb on + strand at 136.326 kb on + strand at 136.332 kb on + strand at 136.382 kb on + strand at 136.416 kb on - strand at 136.457 kb on + strand at 136.458 kb on - strand at 136.521 kb on + strand at 136.533 kb on + strand at 136.533 kb on + strand at 136.537 kb on - strand at 136.541 kb on - strand at 136.575 kb on - strand at 136.584 kb on + strand at 136.585 kb on - strand at 136.630 kb on + strand at 136.631 kb on - strand at 136.637 kb on - strand at 136.681 kb on + strand at 136.681 kb on + strand at 136.682 kb on - strand at 136.682 kb on - strand at 136.719 kb on + strand at 136.719 kb on + strand at 136.719 kb on + strand at 136.719 kb on + strand at 136.729 kb on + strand at 136.777 kb on - strand at 136.784 kb on + strand at 136.784 kb on + strand at 136.785 kb on - strand at 136.842 kb on + strand at 136.842 kb on + strand at 136.850 kb on + strand at 136.851 kb on - strand at 136.907 kb on - strand at 136.920 kb on + strand at 136.920 kb on + strand at 136.937 kb on + strand at 136.937 kb on + strand at 136.937 kb on + strand at 136.937 kb on + strand at 136.938 kb on - strand at 136.940 kb on + strand at 136.941 kb on - strand at 136.978 kb on - strand at 136.993 kb on + strand at 136.999 kb on + strand at 137.004 kb on - strand at 137.029 kb on + strand at 137.035 kb on + strand at 137.035 kb on + strand at 137.036 kb on - strand at 137.039 kb on + strand at 137.040 kb on - strand at 137.040 kb on - strand at 137.065 kb on + strand at 137.069 kb on - strand at 137.092 kb on + strand at 137.093 kb on - strand at 137.093 kb on - strand at 137.093 kb on - strand at 137.119 kb on - strand at 137.138 kb on + strand at 137.138 kb on + strand at 137.155 kb on + strand at 137.162 kb on - strand at 137.162 kb on - strand at 137.165 kb on - strand at 137.226 kb on - strand, within BACOVA_03064 at 137.226 kb on - strand, within BACOVA_03064 at 137.226 kb on - strand, within BACOVA_03064 at 137.270 kb on - strand, within BACOVA_03064 at 137.270 kb on - strand, within BACOVA_03064 at 137.353 kb on - strand, within BACOVA_03064 at 137.353 kb on - strand, within BACOVA_03064 at 137.353 kb on - strand, within BACOVA_03064 at 137.407 kb on + strand, within BACOVA_03064 at 137.407 kb on + strand, within BACOVA_03064 at 137.412 kb on - strand, within BACOVA_03064 at 137.453 kb on + strand, within BACOVA_03064 at 137.453 kb on + strand, within BACOVA_03064 at 137.454 kb on - strand, within BACOVA_03064 at 137.465 kb on - strand, within BACOVA_03064 at 137.476 kb on + strand, within BACOVA_03064 at 137.477 kb on - strand, within BACOVA_03064 at 137.505 kb on - strand, within BACOVA_03064 at 137.548 kb on - strand at 137.548 kb on - strand at 137.573 kb on + strand at 137.614 kb on + strand at 137.614 kb on + strand at 137.614 kb on + strand at 137.614 kb on + strand at 137.615 kb on - strand at 137.696 kb on - strand, within BACOVA_03065 at 137.755 kb on - strand, within BACOVA_03065 at 137.787 kb on + strand, within BACOVA_03065 at 137.788 kb on - strand, within BACOVA_03065 at 137.825 kb on + strand, within BACOVA_03065 at 137.828 kb on - strand, within BACOVA_03065 at 137.828 kb on - strand, within BACOVA_03065 at 137.831 kb on - strand, within BACOVA_03065 at 137.831 kb on - strand, within BACOVA_03065 at 137.837 kb on - strand, within BACOVA_03065 at 137.875 kb on + strand, within BACOVA_03065 at 137.879 kb on - strand, within BACOVA_03065 at 137.879 kb on - strand, within BACOVA_03065 at 137.885 kb on - strand, within BACOVA_03065 at 137.900 kb on - strand, within BACOVA_03065 at 137.993 kb on + strand at 137.993 kb on + strand at 138.027 kb on + strand at 138.028 kb on - strand at 138.028 kb on - strand at 138.031 kb on + strand at 138.040 kb on - strand at 138.050 kb on + strand at 138.051 kb on - strand at 138.051 kb on - strand at 138.051 kb on - strand at 138.084 kb on - strand, within BACOVA_03066 at 138.170 kb on - strand at 138.170 kb on - strand at 138.184 kb on + strand at 138.185 kb on - strand at 138.228 kb on + strand at 138.232 kb on + strand at 138.233 kb on - strand at 138.270 kb on + strand at 138.270 kb on + strand at 138.271 kb on - strand at 138.271 kb on - strand at 138.280 kb on + strand at 138.283 kb on + strand at 138.290 kb on + strand at 138.290 kb on + strand at 138.291 kb on - strand at 138.294 kb on + strand at 138.350 kb on + strand at 138.355 kb on + strand at 138.356 kb on - strand at 138.373 kb on - strand at 138.380 kb on + strand at 138.380 kb on + strand at 138.380 kb on + strand at 138.381 kb on - strand at 138.381 kb on - strand at 138.381 kb on - strand at 138.443 kb on - strand, within BACOVA_03067 at 138.446 kb on + strand, within BACOVA_03067 at 138.446 kb on + strand, within BACOVA_03067 at 138.447 kb on - strand, within BACOVA_03067 at 138.449 kb on + strand, within BACOVA_03067 at 138.449 kb on + strand, within BACOVA_03067 at 138.453 kb on + strand, within BACOVA_03067 at 138.475 kb on - strand, within BACOVA_03067 at 138.486 kb on + strand, within BACOVA_03067 at 138.486 kb on + strand, within BACOVA_03067 at 138.487 kb on - strand, within BACOVA_03067 at 138.487 kb on - strand, within BACOVA_03067 at 138.487 kb on - strand, within BACOVA_03067 at 138.487 kb on - strand, within BACOVA_03067 at 138.495 kb on - strand, within BACOVA_03067 at 138.497 kb on - strand, within BACOVA_03067 at 138.497 kb on - strand, within BACOVA_03067 at 138.552 kb on + strand, within BACOVA_03067 at 138.573 kb on + strand, within BACOVA_03067
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mM (C) remove 136,180 - BACOVA_03063 0.86 +0.2 136,221 + BACOVA_03063 0.87 +0.5 136,231 - BACOVA_03063 0.88 +0.1 136,293 - BACOVA_03063 0.90 -0.3 136,313 - -0.6 136,320 - +2.3 136,320 - +0.5 136,320 - -0.6 136,321 + -1.1 136,321 + +0.5 136,321 + -0.2 136,321 + -0.2 136,321 + -0.5 136,321 + -0.0 136,321 + +0.2 136,322 - +0.4 136,322 - -0.1 136,322 - -1.6 136,322 - +0.3 136,326 + -1.2 136,326 + +0.1 136,332 + -0.8 136,382 + +2.1 136,416 - -0.6 136,457 + -0.6 136,458 - +1.7 136,521 + +1.4 136,533 + -0.3 136,533 + -0.1 136,537 - +0.6 136,541 - -2.1 136,575 - -2.4 136,584 + -1.1 136,585 - +1.2 136,630 + -0.7 136,631 - -0.1 136,637 - +0.1 136,681 + -0.4 136,681 + -0.5 136,682 - -0.6 136,682 - -0.0 136,719 + +0.3 136,719 + -0.4 136,719 + +0.3 136,719 + +0.4 136,729 + -1.1 136,777 - -0.1 136,784 + -0.8 136,784 + -0.5 136,785 - +0.7 136,842 + -2.0 136,842 + -1.7 136,850 + -1.4 136,851 - +0.3 136,907 - -0.1 136,920 + +1.4 136,920 + +0.2 136,937 + -0.8 136,937 + +0.7 136,937 + -0.2 136,937 + +0.7 136,938 - -0.1 136,940 + -0.2 136,941 - +0.6 136,978 - -0.1 136,993 + -0.2 136,999 + -0.9 137,004 - -1.2 137,029 + +0.2 137,035 + +0.3 137,035 + -0.4 137,036 - -0.7 137,039 + +2.5 137,040 - -0.2 137,040 - +1.5 137,065 + -0.7 137,069 - -2.0 137,092 + -0.5 137,093 - +2.1 137,093 - +0.1 137,093 - +1.2 137,119 - +1.3 137,138 + -0.3 137,138 + -0.3 137,155 + +1.5 137,162 - -0.5 137,162 - +0.3 137,165 - +0.1 137,226 - BACOVA_03064 0.17 +0.9 137,226 - BACOVA_03064 0.17 +0.3 137,226 - BACOVA_03064 0.17 -0.5 137,270 - BACOVA_03064 0.27 +0.7 137,270 - BACOVA_03064 0.27 -0.3 137,353 - BACOVA_03064 0.47 -1.0 137,353 - BACOVA_03064 0.47 -0.3 137,353 - BACOVA_03064 0.47 -0.1 137,407 + BACOVA_03064 0.60 +1.1 137,407 + BACOVA_03064 0.60 -0.5 137,412 - BACOVA_03064 0.61 +0.6 137,453 + BACOVA_03064 0.71 -0.1 137,453 + BACOVA_03064 0.71 +1.8 137,454 - BACOVA_03064 0.71 -0.2 137,465 - BACOVA_03064 0.74 +0.4 137,476 + BACOVA_03064 0.76 -0.5 137,477 - BACOVA_03064 0.76 +0.3 137,505 - BACOVA_03064 0.83 -0.3 137,548 - +1.3 137,548 - +0.9 137,573 + -0.4 137,614 + +0.9 137,614 + +0.1 137,614 + +1.1 137,614 + -0.1 137,615 - +1.4 137,696 - BACOVA_03065 0.26 +0.8 137,755 - BACOVA_03065 0.40 -0.2 137,787 + BACOVA_03065 0.48 -0.3 137,788 - BACOVA_03065 0.49 +0.5 137,825 + BACOVA_03065 0.58 +1.1 137,828 - BACOVA_03065 0.59 -1.7 137,828 - BACOVA_03065 0.59 +0.7 137,831 - BACOVA_03065 0.59 +0.7 137,831 - BACOVA_03065 0.59 +1.0 137,837 - BACOVA_03065 0.61 -0.8 137,875 + BACOVA_03065 0.70 +0.1 137,879 - BACOVA_03065 0.71 -0.2 137,879 - BACOVA_03065 0.71 -0.8 137,885 - BACOVA_03065 0.73 -0.7 137,900 - BACOVA_03065 0.76 -0.6 137,993 + -0.3 137,993 + +0.5 138,027 + -0.5 138,028 - -0.3 138,028 - -0.3 138,031 + -0.1 138,040 - -0.5 138,050 + -0.4 138,051 - +0.7 138,051 - +0.4 138,051 - +1.3 138,084 - BACOVA_03066 0.30 -0.1 138,170 - +0.0 138,170 - +1.2 138,184 + +0.0 138,185 - -0.2 138,228 + -1.1 138,232 + +0.7 138,233 - -1.0 138,270 + +1.0 138,270 + -0.2 138,271 - -0.7 138,271 - +1.2 138,280 + +1.4 138,283 + +0.3 138,290 + +2.0 138,290 + +0.3 138,291 - -0.5 138,294 + -0.7 138,350 + -0.7 138,355 + +0.1 138,356 - +2.5 138,373 - -1.1 138,380 + +0.6 138,380 + -0.5 138,380 + +0.6 138,381 - -0.4 138,381 - -0.1 138,381 - +0.3 138,443 - BACOVA_03067 0.16 +1.1 138,446 + BACOVA_03067 0.16 +0.1 138,446 + BACOVA_03067 0.16 -2.2 138,447 - BACOVA_03067 0.16 -0.4 138,449 + BACOVA_03067 0.16 -0.1 138,449 + BACOVA_03067 0.16 +0.2 138,453 + BACOVA_03067 0.17 +0.6 138,475 - BACOVA_03067 0.19 +0.2 138,486 + BACOVA_03067 0.20 -0.1 138,486 + BACOVA_03067 0.20 -0.1 138,487 - BACOVA_03067 0.20 +0.1 138,487 - BACOVA_03067 0.20 +0.8 138,487 - BACOVA_03067 0.20 -0.2 138,487 - BACOVA_03067 0.20 -1.5 138,495 - BACOVA_03067 0.21 +0.9 138,497 - BACOVA_03067 0.21 +0.8 138,497 - BACOVA_03067 0.21 -0.1 138,552 + BACOVA_03067 0.27 -1.2 138,573 + BACOVA_03067 0.29 -0.0
Or see this region's nucleotide sequence