Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02807

Experiment: NAG 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02806 and BACOVA_02807 are separated by 44 nucleotidesBACOVA_02807 and BACOVA_02808 are separated by 12 nucleotidesBACOVA_02808 and BACOVA_02809 are separated by 21 nucleotides BACOVA_02806: BACOVA_02806 - glycosyl hydrolase, family 43, at 273,195 to 274,184 _02806 BACOVA_02807: BACOVA_02807 - hypothetical protein, at 274,229 to 275,854 _02807 BACOVA_02808: BACOVA_02808 - hypothetical protein, at 275,867 to 276,277 _02808 BACOVA_02809: BACOVA_02809 - hypothetical protein, at 276,299 to 277,957 _02809 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.239 kb on + strandat 273.240 kb on - strandat 273.240 kb on - strandat 273.245 kb on - strandat 273.247 kb on - strandat 273.285 kb on - strandat 273.337 kb on + strand, within BACOVA_02806at 273.344 kb on - strand, within BACOVA_02806at 273.366 kb on + strand, within BACOVA_02806at 273.367 kb on - strand, within BACOVA_02806at 273.367 kb on - strand, within BACOVA_02806at 273.469 kb on + strand, within BACOVA_02806at 273.470 kb on - strand, within BACOVA_02806at 273.511 kb on + strand, within BACOVA_02806at 273.520 kb on + strand, within BACOVA_02806at 273.521 kb on - strand, within BACOVA_02806at 273.521 kb on - strand, within BACOVA_02806at 273.521 kb on - strand, within BACOVA_02806at 273.523 kb on + strand, within BACOVA_02806at 273.523 kb on + strand, within BACOVA_02806at 273.524 kb on - strand, within BACOVA_02806at 273.577 kb on + strand, within BACOVA_02806at 273.615 kb on - strand, within BACOVA_02806at 273.615 kb on - strand, within BACOVA_02806at 273.642 kb on - strand, within BACOVA_02806at 273.654 kb on + strand, within BACOVA_02806at 273.683 kb on + strand, within BACOVA_02806at 273.684 kb on - strand, within BACOVA_02806at 273.684 kb on - strand, within BACOVA_02806at 273.690 kb on - strand, within BACOVA_02806at 273.693 kb on - strand, within BACOVA_02806at 273.707 kb on - strand, within BACOVA_02806at 273.708 kb on + strand, within BACOVA_02806at 273.708 kb on + strand, within BACOVA_02806at 273.709 kb on - strand, within BACOVA_02806at 273.712 kb on + strand, within BACOVA_02806at 273.715 kb on + strand, within BACOVA_02806at 273.715 kb on + strand, within BACOVA_02806at 273.734 kb on + strand, within BACOVA_02806at 273.739 kb on - strand, within BACOVA_02806at 273.750 kb on + strand, within BACOVA_02806at 273.750 kb on + strand, within BACOVA_02806at 273.751 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.753 kb on - strand, within BACOVA_02806at 273.772 kb on - strand, within BACOVA_02806at 273.849 kb on - strand, within BACOVA_02806at 273.851 kb on - strand, within BACOVA_02806at 273.860 kb on - strand, within BACOVA_02806at 273.883 kb on + strand, within BACOVA_02806at 273.883 kb on + strand, within BACOVA_02806at 273.883 kb on + strand, within BACOVA_02806at 273.978 kb on + strand, within BACOVA_02806at 273.978 kb on + strand, within BACOVA_02806at 274.042 kb on + strand, within BACOVA_02806at 274.060 kb on + strand, within BACOVA_02806at 274.060 kb on + strand, within BACOVA_02806at 274.061 kb on - strand, within BACOVA_02806at 274.078 kb on + strand, within BACOVA_02806at 274.079 kb on - strand, within BACOVA_02806at 274.154 kb on + strandat 274.173 kb on - strandat 274.193 kb on + strandat 274.193 kb on + strandat 274.201 kb on - strandat 274.212 kb on - strandat 274.235 kb on + strandat 274.278 kb on - strandat 274.313 kb on + strandat 274.408 kb on + strand, within BACOVA_02807at 274.409 kb on - strand, within BACOVA_02807at 274.446 kb on + strand, within BACOVA_02807at 274.453 kb on + strand, within BACOVA_02807at 274.517 kb on + strand, within BACOVA_02807at 274.517 kb on + strand, within BACOVA_02807at 274.585 kb on + strand, within BACOVA_02807at 274.586 kb on - strand, within BACOVA_02807at 274.633 kb on - strand, within BACOVA_02807at 274.675 kb on + strand, within BACOVA_02807at 274.731 kb on + strand, within BACOVA_02807at 274.732 kb on - strand, within BACOVA_02807at 274.732 kb on - strand, within BACOVA_02807at 274.748 kb on - strand, within BACOVA_02807at 274.752 kb on + strand, within BACOVA_02807at 274.752 kb on + strand, within BACOVA_02807at 274.753 kb on - strand, within BACOVA_02807at 274.753 kb on - strand, within BACOVA_02807at 274.754 kb on + strand, within BACOVA_02807at 274.755 kb on - strand, within BACOVA_02807at 274.755 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.760 kb on - strand, within BACOVA_02807at 274.778 kb on + strand, within BACOVA_02807at 274.778 kb on + strand, within BACOVA_02807at 274.798 kb on + strand, within BACOVA_02807at 275.083 kb on + strand, within BACOVA_02807at 275.093 kb on - strand, within BACOVA_02807at 275.116 kb on + strand, within BACOVA_02807at 275.117 kb on - strand, within BACOVA_02807at 275.129 kb on - strand, within BACOVA_02807at 275.129 kb on - strand, within BACOVA_02807at 275.158 kb on + strand, within BACOVA_02807at 275.174 kb on - strand, within BACOVA_02807at 275.198 kb on - strand, within BACOVA_02807at 275.198 kb on - strand, within BACOVA_02807at 275.217 kb on - strand, within BACOVA_02807at 275.243 kb on + strand, within BACOVA_02807at 275.258 kb on + strand, within BACOVA_02807at 275.258 kb on + strand, within BACOVA_02807at 275.296 kb on - strand, within BACOVA_02807at 275.296 kb on - strand, within BACOVA_02807at 275.305 kb on + strand, within BACOVA_02807at 275.306 kb on - strand, within BACOVA_02807at 275.306 kb on - strand, within BACOVA_02807at 275.360 kb on - strand, within BACOVA_02807at 275.488 kb on + strand, within BACOVA_02807at 275.546 kb on - strand, within BACOVA_02807at 275.592 kb on + strand, within BACOVA_02807at 275.671 kb on + strand, within BACOVA_02807at 275.677 kb on + strand, within BACOVA_02807at 275.677 kb on + strand, within BACOVA_02807at 275.678 kb on - strand, within BACOVA_02807at 275.685 kb on + strand, within BACOVA_02807at 275.727 kb on + strandat 275.740 kb on + strandat 275.740 kb on + strandat 275.744 kb on - strandat 275.756 kb on - strandat 275.831 kb on + strandat 275.836 kb on + strandat 275.837 kb on - strandat 275.858 kb on - strandat 275.858 kb on - strandat 275.868 kb on + strandat 275.888 kb on + strandat 275.892 kb on - strandat 275.892 kb on - strandat 275.893 kb on + strandat 275.936 kb on - strand, within BACOVA_02808at 275.943 kb on - strand, within BACOVA_02808at 276.094 kb on + strand, within BACOVA_02808at 276.100 kb on + strand, within BACOVA_02808at 276.155 kb on - strand, within BACOVA_02808at 276.157 kb on - strand, within BACOVA_02808at 276.172 kb on + strand, within BACOVA_02808at 276.172 kb on + strand, within BACOVA_02808at 276.173 kb on - strand, within BACOVA_02808at 276.183 kb on - strand, within BACOVA_02808at 276.213 kb on + strand, within BACOVA_02808at 276.260 kb on + strandat 276.261 kb on - strandat 276.261 kb on - strandat 276.261 kb on - strandat 276.264 kb on + strandat 276.265 kb on - strandat 276.265 kb on - strandat 276.266 kb on + strandat 276.267 kb on - strandat 276.269 kb on + strandat 276.296 kb on + strandat 276.301 kb on - strandat 276.307 kb on + strandat 276.308 kb on - strandat 276.345 kb on + strandat 276.365 kb on + strandat 276.385 kb on + strandat 276.385 kb on + strandat 276.392 kb on + strandat 276.394 kb on + strandat 276.395 kb on - strandat 276.420 kb on - strandat 276.420 kb on - strandat 276.425 kb on - strandat 276.427 kb on - strandat 276.469 kb on + strand, within BACOVA_02809at 276.470 kb on - strand, within BACOVA_02809at 276.470 kb on - strand, within BACOVA_02809at 276.530 kb on - strand, within BACOVA_02809at 276.575 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.616 kb on + strand, within BACOVA_02809at 276.617 kb on - strand, within BACOVA_02809at 276.674 kb on + strand, within BACOVA_02809at 276.683 kb on + strand, within BACOVA_02809at 276.683 kb on + strand, within BACOVA_02809at 276.684 kb on + strand, within BACOVA_02809at 276.684 kb on - strand, within BACOVA_02809at 276.684 kb on - strand, within BACOVA_02809at 276.686 kb on - strand, within BACOVA_02809at 276.694 kb on + strand, within BACOVA_02809at 276.789 kb on + strand, within BACOVA_02809at 276.792 kb on - strand, within BACOVA_02809at 276.810 kb on + strand, within BACOVA_02809at 276.811 kb on - strand, within BACOVA_02809at 276.833 kb on + strand, within BACOVA_02809at 276.838 kb on - strand, within BACOVA_02809

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
remove
273,239 + -0.0
273,240 - +0.7
273,240 - +1.3
273,245 - +0.5
273,247 - +0.3
273,285 - +1.0
273,337 + BACOVA_02806 0.14 -0.0
273,344 - BACOVA_02806 0.15 -0.1
273,366 + BACOVA_02806 0.17 -0.1
273,367 - BACOVA_02806 0.17 +0.1
273,367 - BACOVA_02806 0.17 -0.3
273,469 + BACOVA_02806 0.28 +0.8
273,470 - BACOVA_02806 0.28 +0.6
273,511 + BACOVA_02806 0.32 -1.8
273,520 + BACOVA_02806 0.33 -0.2
273,521 - BACOVA_02806 0.33 +1.1
273,521 - BACOVA_02806 0.33 -1.6
273,521 - BACOVA_02806 0.33 -0.0
273,523 + BACOVA_02806 0.33 -0.2
273,523 + BACOVA_02806 0.33 -2.4
273,524 - BACOVA_02806 0.33 -0.7
273,577 + BACOVA_02806 0.39 -0.4
273,615 - BACOVA_02806 0.42 -0.5
273,615 - BACOVA_02806 0.42 +1.1
273,642 - BACOVA_02806 0.45 -0.9
273,654 + BACOVA_02806 0.46 -1.2
273,683 + BACOVA_02806 0.49 -0.2
273,684 - BACOVA_02806 0.49 -0.9
273,684 - BACOVA_02806 0.49 -1.5
273,690 - BACOVA_02806 0.50 +1.2
273,693 - BACOVA_02806 0.50 -0.1
273,707 - BACOVA_02806 0.52 +0.0
273,708 + BACOVA_02806 0.52 +0.5
273,708 + BACOVA_02806 0.52 +0.6
273,709 - BACOVA_02806 0.52 -0.5
273,712 + BACOVA_02806 0.52 -1.1
273,715 + BACOVA_02806 0.53 +0.1
273,715 + BACOVA_02806 0.53 +1.2
273,734 + BACOVA_02806 0.54 -0.5
273,739 - BACOVA_02806 0.55 -0.3
273,750 + BACOVA_02806 0.56 -0.1
273,750 + BACOVA_02806 0.56 -0.6
273,751 - BACOVA_02806 0.56 +0.8
273,753 - BACOVA_02806 0.56 -0.1
273,753 - BACOVA_02806 0.56 +0.4
273,753 - BACOVA_02806 0.56 -2.2
273,753 - BACOVA_02806 0.56 +0.4
273,753 - BACOVA_02806 0.56 -0.2
273,772 - BACOVA_02806 0.58 -1.7
273,849 - BACOVA_02806 0.66 -0.8
273,851 - BACOVA_02806 0.66 -0.7
273,860 - BACOVA_02806 0.67 +0.2
273,883 + BACOVA_02806 0.69 +1.1
273,883 + BACOVA_02806 0.69 -1.0
273,883 + BACOVA_02806 0.69 -0.2
273,978 + BACOVA_02806 0.79 -2.2
273,978 + BACOVA_02806 0.79 -0.6
274,042 + BACOVA_02806 0.86 -0.5
274,060 + BACOVA_02806 0.87 -0.0
274,060 + BACOVA_02806 0.87 -0.2
274,061 - BACOVA_02806 0.87 +2.0
274,078 + BACOVA_02806 0.89 -0.0
274,079 - BACOVA_02806 0.89 -0.8
274,154 + -0.9
274,173 - +0.3
274,193 + -1.1
274,193 + -0.2
274,201 - +0.5
274,212 - +0.4
274,235 + -0.1
274,278 - -0.7
274,313 + -1.5
274,408 + BACOVA_02807 0.11 +0.4
274,409 - BACOVA_02807 0.11 -0.2
274,446 + BACOVA_02807 0.13 +0.4
274,453 + BACOVA_02807 0.14 -0.7
274,517 + BACOVA_02807 0.18 -2.3
274,517 + BACOVA_02807 0.18 -0.1
274,585 + BACOVA_02807 0.22 -1.4
274,586 - BACOVA_02807 0.22 -0.4
274,633 - BACOVA_02807 0.25 +0.1
274,675 + BACOVA_02807 0.27 -0.0
274,731 + BACOVA_02807 0.31 +0.2
274,732 - BACOVA_02807 0.31 +0.3
274,732 - BACOVA_02807 0.31 -0.8
274,748 - BACOVA_02807 0.32 -0.0
274,752 + BACOVA_02807 0.32 -0.2
274,752 + BACOVA_02807 0.32 +1.5
274,753 - BACOVA_02807 0.32 -0.3
274,753 - BACOVA_02807 0.32 +0.5
274,754 + BACOVA_02807 0.32 -0.7
274,755 - BACOVA_02807 0.32 -0.1
274,755 - BACOVA_02807 0.32 -1.1
274,760 - BACOVA_02807 0.33 -0.3
274,760 - BACOVA_02807 0.33 +0.3
274,760 - BACOVA_02807 0.33 +0.7
274,760 - BACOVA_02807 0.33 +1.4
274,778 + BACOVA_02807 0.34 -0.6
274,778 + BACOVA_02807 0.34 +0.2
274,798 + BACOVA_02807 0.35 -1.8
275,083 + BACOVA_02807 0.53 -0.3
275,093 - BACOVA_02807 0.53 +1.5
275,116 + BACOVA_02807 0.55 -1.1
275,117 - BACOVA_02807 0.55 -0.3
275,129 - BACOVA_02807 0.55 -0.0
275,129 - BACOVA_02807 0.55 -0.6
275,158 + BACOVA_02807 0.57 -0.0
275,174 - BACOVA_02807 0.58 +1.4
275,198 - BACOVA_02807 0.60 -1.9
275,198 - BACOVA_02807 0.60 +0.1
275,217 - BACOVA_02807 0.61 -0.6
275,243 + BACOVA_02807 0.62 -0.4
275,258 + BACOVA_02807 0.63 -0.8
275,258 + BACOVA_02807 0.63 -0.6
275,296 - BACOVA_02807 0.66 -0.5
275,296 - BACOVA_02807 0.66 -1.2
275,305 + BACOVA_02807 0.66 -1.3
275,306 - BACOVA_02807 0.66 -1.2
275,306 - BACOVA_02807 0.66 -0.5
275,360 - BACOVA_02807 0.70 -0.0
275,488 + BACOVA_02807 0.77 +0.1
275,546 - BACOVA_02807 0.81 +1.3
275,592 + BACOVA_02807 0.84 +1.0
275,671 + BACOVA_02807 0.89 +0.4
275,677 + BACOVA_02807 0.89 +0.1
275,677 + BACOVA_02807 0.89 -0.4
275,678 - BACOVA_02807 0.89 +0.2
275,685 + BACOVA_02807 0.90 +1.1
275,727 + -0.7
275,740 + -0.7
275,740 + -1.2
275,744 - +0.7
275,756 - +0.5
275,831 + -0.6
275,836 + +0.4
275,837 - +0.2
275,858 - -0.4
275,858 - -0.6
275,868 + -0.3
275,888 + +1.0
275,892 - +0.4
275,892 - +0.5
275,893 + +0.8
275,936 - BACOVA_02808 0.17 -0.3
275,943 - BACOVA_02808 0.18 +0.4
276,094 + BACOVA_02808 0.55 +0.1
276,100 + BACOVA_02808 0.57 -0.3
276,155 - BACOVA_02808 0.70 +0.1
276,157 - BACOVA_02808 0.71 +0.1
276,172 + BACOVA_02808 0.74 -1.0
276,172 + BACOVA_02808 0.74 -1.1
276,173 - BACOVA_02808 0.74 -0.3
276,183 - BACOVA_02808 0.77 +0.2
276,213 + BACOVA_02808 0.84 -1.5
276,260 + +0.4
276,261 - +0.5
276,261 - +0.5
276,261 - +2.4
276,264 + +0.5
276,265 - -0.4
276,265 - +0.7
276,266 + +1.2
276,267 - -0.9
276,269 + -0.2
276,296 + +1.0
276,301 - +0.1
276,307 + -1.0
276,308 - +0.5
276,345 + -0.7
276,365 + +0.4
276,385 + -0.4
276,385 + -0.0
276,392 + -0.2
276,394 + -0.0
276,395 - +0.5
276,420 - +0.4
276,420 - +0.9
276,425 - -0.5
276,427 - +0.4
276,469 + BACOVA_02809 0.10 +1.4
276,470 - BACOVA_02809 0.10 -0.3
276,470 - BACOVA_02809 0.10 +0.7
276,530 - BACOVA_02809 0.14 +0.2
276,575 + BACOVA_02809 0.17 -0.9
276,582 + BACOVA_02809 0.17 +0.1
276,582 + BACOVA_02809 0.17 -0.8
276,582 + BACOVA_02809 0.17 +2.7
276,582 - BACOVA_02809 0.17 +0.7
276,583 - BACOVA_02809 0.17 -0.1
276,583 - BACOVA_02809 0.17 +0.5
276,583 - BACOVA_02809 0.17 +1.8
276,583 - BACOVA_02809 0.17 -0.9
276,583 - BACOVA_02809 0.17 -0.7
276,583 - BACOVA_02809 0.17 +0.3
276,616 + BACOVA_02809 0.19 +0.4
276,617 - BACOVA_02809 0.19 +0.1
276,674 + BACOVA_02809 0.23 +1.0
276,683 + BACOVA_02809 0.23 -0.1
276,683 + BACOVA_02809 0.23 +0.4
276,684 + BACOVA_02809 0.23 -1.4
276,684 - BACOVA_02809 0.23 -0.4
276,684 - BACOVA_02809 0.23 +1.5
276,686 - BACOVA_02809 0.23 +1.0
276,694 + BACOVA_02809 0.24 -1.7
276,789 + BACOVA_02809 0.30 +0.0
276,792 - BACOVA_02809 0.30 -0.5
276,810 + BACOVA_02809 0.31 +1.4
276,811 - BACOVA_02809 0.31 -0.5
276,833 + BACOVA_02809 0.32 -1.2
276,838 - BACOVA_02809 0.32 +0.1

Or see this region's nucleotide sequence