Experiment: NAG 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02030 and BACOVA_02031 are separated by 30 nucleotides BACOVA_02031 and BACOVA_02032 are separated by 7 nucleotides BACOVA_02032 and BACOVA_02033 are separated by 92 nucleotides
BACOVA_02030: BACOVA_02030 - comF family protein, at 333,718 to 334,422
_02030
BACOVA_02031: BACOVA_02031 - inositol monophosphatase family protein, at 334,453 to 335,256
_02031
BACOVA_02032: BACOVA_02032 - hypothetical protein, at 335,264 to 335,404
_02032
BACOVA_02033: BACOVA_02033 - hypothetical protein, at 335,497 to 337,026
_02033
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 333.469 kb on + strand at 333.470 kb on - strand at 333.517 kb on - strand at 333.572 kb on - strand at 333.626 kb on + strand at 333.627 kb on - strand at 333.627 kb on - strand at 333.636 kb on + strand at 333.673 kb on - strand at 333.698 kb on + strand at 333.699 kb on - strand at 333.701 kb on - strand at 333.739 kb on + strand at 333.741 kb on + strand at 333.741 kb on + strand at 333.742 kb on - strand at 333.745 kb on - strand at 333.745 kb on - strand at 333.795 kb on + strand, within BACOVA_02030 at 333.824 kb on - strand, within BACOVA_02030 at 333.824 kb on - strand, within BACOVA_02030 at 333.829 kb on + strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.830 kb on - strand, within BACOVA_02030 at 333.874 kb on - strand, within BACOVA_02030 at 333.874 kb on - strand, within BACOVA_02030 at 333.886 kb on - strand, within BACOVA_02030 at 333.940 kb on + strand, within BACOVA_02030 at 333.954 kb on + strand, within BACOVA_02030 at 333.973 kb on + strand, within BACOVA_02030 at 334.011 kb on + strand, within BACOVA_02030 at 334.012 kb on - strand, within BACOVA_02030 at 334.012 kb on - strand, within BACOVA_02030 at 334.107 kb on + strand, within BACOVA_02030 at 334.110 kb on - strand, within BACOVA_02030 at 334.129 kb on + strand, within BACOVA_02030 at 334.129 kb on + strand, within BACOVA_02030 at 334.130 kb on - strand, within BACOVA_02030 at 334.130 kb on - strand, within BACOVA_02030 at 334.148 kb on + strand, within BACOVA_02030 at 334.257 kb on + strand, within BACOVA_02030 at 334.275 kb on - strand, within BACOVA_02030 at 334.297 kb on - strand, within BACOVA_02030 at 334.297 kb on - strand, within BACOVA_02030 at 334.299 kb on + strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.308 kb on + strand, within BACOVA_02030 at 334.314 kb on + strand, within BACOVA_02030 at 334.315 kb on - strand, within BACOVA_02030 at 334.315 kb on - strand, within BACOVA_02030 at 334.334 kb on - strand, within BACOVA_02030 at 334.378 kb on + strand at 334.379 kb on - strand at 334.379 kb on - strand at 334.389 kb on + strand at 334.389 kb on + strand at 334.390 kb on - strand at 334.390 kb on - strand at 334.422 kb on + strand at 334.425 kb on + strand at 334.426 kb on - strand at 334.428 kb on + strand at 334.429 kb on - strand at 334.443 kb on - strand at 334.448 kb on - strand at 334.454 kb on + strand at 334.454 kb on + strand at 334.458 kb on + strand at 334.527 kb on + strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.670 kb on + strand, within BACOVA_02031 at 334.671 kb on - strand, within BACOVA_02031 at 334.708 kb on - strand, within BACOVA_02031 at 334.725 kb on - strand, within BACOVA_02031 at 334.760 kb on + strand, within BACOVA_02031 at 334.775 kb on + strand, within BACOVA_02031 at 334.882 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.936 kb on + strand, within BACOVA_02031 at 334.937 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.977 kb on - strand, within BACOVA_02031 at 335.015 kb on + strand, within BACOVA_02031 at 335.030 kb on + strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.224 kb on + strand at 335.235 kb on + strand at 335.235 kb on + strand at 335.236 kb on - strand at 335.259 kb on - strand at 335.356 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.384 kb on + strand, within BACOVA_02032 at 335.385 kb on + strand, within BACOVA_02032 at 335.396 kb on + strand at 335.423 kb on + strand at 335.458 kb on - strand at 335.482 kb on + strand at 335.483 kb on - strand at 335.489 kb on + strand at 335.492 kb on + strand at 335.492 kb on + strand at 335.493 kb on - strand at 335.529 kb on + strand at 335.530 kb on - strand at 335.530 kb on - strand at 335.537 kb on + strand at 335.609 kb on - strand at 335.620 kb on - strand at 335.625 kb on + strand at 335.626 kb on - strand at 335.629 kb on + strand at 335.630 kb on - strand at 335.634 kb on + strand at 335.634 kb on + strand at 335.650 kb on + strand, within BACOVA_02033 at 335.651 kb on - strand, within BACOVA_02033 at 335.677 kb on - strand, within BACOVA_02033 at 335.697 kb on - strand, within BACOVA_02033 at 335.712 kb on + strand, within BACOVA_02033 at 335.724 kb on + strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.740 kb on + strand, within BACOVA_02033 at 335.802 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.818 kb on - strand, within BACOVA_02033 at 335.821 kb on + strand, within BACOVA_02033 at 335.834 kb on - strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.905 kb on - strand, within BACOVA_02033 at 335.921 kb on - strand, within BACOVA_02033 at 335.923 kb on - strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.985 kb on - strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.098 kb on - strand, within BACOVA_02033 at 336.143 kb on - strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.166 kb on + strand, within BACOVA_02033 at 336.167 kb on - strand, within BACOVA_02033 at 336.181 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mM (C) remove 333,469 + +1.1 333,470 - +0.0 333,517 - +0.5 333,572 - +0.8 333,626 + +0.2 333,627 - -0.5 333,627 - -0.3 333,636 + -0.2 333,673 - -0.5 333,698 + -1.0 333,699 - -0.9 333,701 - +0.0 333,739 + +0.4 333,741 + +0.8 333,741 + +0.6 333,742 - +0.1 333,745 - +0.0 333,745 - -0.1 333,795 + BACOVA_02030 0.11 -0.0 333,824 - BACOVA_02030 0.15 -1.1 333,824 - BACOVA_02030 0.15 +0.8 333,829 + BACOVA_02030 0.16 -0.0 333,830 - BACOVA_02030 0.16 +0.4 333,830 - BACOVA_02030 0.16 +0.2 333,830 - BACOVA_02030 0.16 -0.5 333,830 - BACOVA_02030 0.16 -0.7 333,874 - BACOVA_02030 0.22 -0.8 333,874 - BACOVA_02030 0.22 -1.4 333,886 - BACOVA_02030 0.24 -0.3 333,940 + BACOVA_02030 0.31 +0.6 333,954 + BACOVA_02030 0.33 -0.2 333,973 + BACOVA_02030 0.36 -2.2 334,011 + BACOVA_02030 0.42 +0.1 334,012 - BACOVA_02030 0.42 -0.3 334,012 - BACOVA_02030 0.42 -0.1 334,107 + BACOVA_02030 0.55 +0.6 334,110 - BACOVA_02030 0.56 +0.2 334,129 + BACOVA_02030 0.58 -0.9 334,129 + BACOVA_02030 0.58 +0.8 334,130 - BACOVA_02030 0.58 -1.9 334,130 - BACOVA_02030 0.58 +1.0 334,148 + BACOVA_02030 0.61 -0.3 334,257 + BACOVA_02030 0.76 +0.0 334,275 - BACOVA_02030 0.79 -0.0 334,297 - BACOVA_02030 0.82 -0.2 334,297 - BACOVA_02030 0.82 -0.0 334,299 + BACOVA_02030 0.82 -0.4 334,300 - BACOVA_02030 0.83 +0.1 334,300 - BACOVA_02030 0.83 -0.2 334,300 - BACOVA_02030 0.83 +1.3 334,300 - BACOVA_02030 0.83 +0.1 334,300 - BACOVA_02030 0.83 +0.1 334,308 + BACOVA_02030 0.84 +0.6 334,314 + BACOVA_02030 0.85 +0.2 334,315 - BACOVA_02030 0.85 +1.1 334,315 - BACOVA_02030 0.85 -0.7 334,334 - BACOVA_02030 0.87 +0.6 334,378 + +0.3 334,379 - +0.1 334,379 - -0.9 334,389 + -0.2 334,389 + +1.1 334,390 - -0.2 334,390 - +0.3 334,422 + +0.3 334,425 + -0.6 334,426 - -0.9 334,428 + +0.0 334,429 - +1.0 334,443 - +1.3 334,448 - +1.0 334,454 + +0.3 334,454 + -0.4 334,458 + -1.3 334,527 + -0.6 334,528 - -0.3 334,528 - -0.7 334,528 - -0.6 334,670 + BACOVA_02031 0.27 +0.2 334,671 - BACOVA_02031 0.27 -1.1 334,708 - BACOVA_02031 0.32 +1.0 334,725 - BACOVA_02031 0.34 -0.4 334,760 + BACOVA_02031 0.38 -0.7 334,775 + BACOVA_02031 0.40 +1.0 334,882 + BACOVA_02031 0.53 -1.0 334,901 + BACOVA_02031 0.56 +0.3 334,901 + BACOVA_02031 0.56 +0.2 334,936 + BACOVA_02031 0.60 +0.1 334,937 - BACOVA_02031 0.60 -0.1 334,975 - BACOVA_02031 0.65 -0.7 334,975 - BACOVA_02031 0.65 +0.3 334,976 + BACOVA_02031 0.65 +0.4 334,976 + BACOVA_02031 0.65 +0.3 334,977 - BACOVA_02031 0.65 -0.4 335,015 + BACOVA_02031 0.70 +1.4 335,030 + BACOVA_02031 0.72 +0.2 335,083 - BACOVA_02031 0.78 -0.5 335,083 - BACOVA_02031 0.78 -0.3 335,124 - BACOVA_02031 0.83 +0.3 335,124 - BACOVA_02031 0.83 +0.7 335,132 + BACOVA_02031 0.84 +0.2 335,132 + BACOVA_02031 0.84 -0.2 335,133 - BACOVA_02031 0.85 -0.0 335,133 - BACOVA_02031 0.85 +0.1 335,224 + -0.2 335,235 + -0.3 335,235 + +0.3 335,236 - -0.6 335,259 - -1.0 335,356 + BACOVA_02032 0.65 +1.0 335,380 + BACOVA_02032 0.82 +0.2 335,380 + BACOVA_02032 0.82 +0.6 335,381 - BACOVA_02032 0.83 -0.6 335,381 - BACOVA_02032 0.83 -0.8 335,384 + BACOVA_02032 0.85 +0.1 335,385 + BACOVA_02032 0.86 +0.2 335,396 + -0.5 335,423 + -0.5 335,458 - +0.0 335,482 + -0.1 335,483 - -0.0 335,489 + +0.8 335,492 + +0.5 335,492 + +1.6 335,493 - -0.3 335,529 + +1.2 335,530 - -0.1 335,530 - +0.1 335,537 + +0.3 335,609 - +1.0 335,620 - -0.7 335,625 + +0.3 335,626 - -0.4 335,629 + +0.3 335,630 - +2.1 335,634 + -0.3 335,634 + -0.5 335,650 + BACOVA_02033 0.10 -0.2 335,651 - BACOVA_02033 0.10 -0.1 335,677 - BACOVA_02033 0.12 -0.4 335,697 - BACOVA_02033 0.13 +0.2 335,712 + BACOVA_02033 0.14 -1.4 335,724 + BACOVA_02033 0.15 +0.0 335,725 - BACOVA_02033 0.15 -0.7 335,725 - BACOVA_02033 0.15 -0.5 335,726 + BACOVA_02033 0.15 -0.5 335,726 + BACOVA_02033 0.15 +1.0 335,726 + BACOVA_02033 0.15 -0.7 335,726 + BACOVA_02033 0.15 -1.2 335,727 - BACOVA_02033 0.15 -1.4 335,727 - BACOVA_02033 0.15 +0.1 335,727 - BACOVA_02033 0.15 -0.4 335,740 + BACOVA_02033 0.16 -0.9 335,802 + BACOVA_02033 0.20 +0.6 335,817 + BACOVA_02033 0.21 -0.7 335,817 + BACOVA_02033 0.21 +0.0 335,818 - BACOVA_02033 0.21 +0.1 335,821 + BACOVA_02033 0.21 +0.6 335,834 - BACOVA_02033 0.22 -0.4 335,892 + BACOVA_02033 0.26 -0.5 335,892 + BACOVA_02033 0.26 -0.7 335,905 - BACOVA_02033 0.27 +0.0 335,921 - BACOVA_02033 0.28 -0.2 335,923 - BACOVA_02033 0.28 -1.4 335,946 + BACOVA_02033 0.29 -0.2 335,946 + BACOVA_02033 0.29 -1.0 335,985 - BACOVA_02033 0.32 +0.1 336,078 + BACOVA_02033 0.38 -0.2 336,078 + BACOVA_02033 0.38 +0.8 336,079 - BACOVA_02033 0.38 -0.8 336,079 - BACOVA_02033 0.38 +1.1 336,098 - BACOVA_02033 0.39 -1.0 336,143 - BACOVA_02033 0.42 +0.2 336,145 + BACOVA_02033 0.42 +0.2 336,145 + BACOVA_02033 0.42 +0.3 336,146 - BACOVA_02033 0.42 -1.4 336,146 - BACOVA_02033 0.42 +0.0 336,166 + BACOVA_02033 0.44 +0.7 336,167 - BACOVA_02033 0.44 -0.3 336,181 + BACOVA_02033 0.45 +0.0 336,192 + BACOVA_02033 0.45 -0.7 336,192 + BACOVA_02033 0.45 +1.2 336,192 + BACOVA_02033 0.45 -0.6
Or see this region's nucleotide sequence