Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05503

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05502 and BACOVA_05503 are separated by 30 nucleotidesBACOVA_05503 and BACOVA_05504 are separated by 170 nucleotidesBACOVA_05504 and BACOVA_05505 are separated by 22 nucleotides BACOVA_05502: BACOVA_05502 - site-specific recombinase, phage integrase family, at 1,011,684 to 1,012,421 _05502 BACOVA_05503: BACOVA_05503 - hypothetical protein, at 1,012,452 to 1,012,586 _05503 BACOVA_05504: BACOVA_05504 - transcription termination/antitermination factor NusG, at 1,012,757 to 1,013,338 _05504 BACOVA_05505: BACOVA_05505 - polysaccharide biosynthesis/export protein, at 1,013,361 to 1,015,775 _05505 Position (kb) 1012 1013Strain fitness (log2 ratio) -1 0 1 2at 1011.531 kb on - strandat 1011.645 kb on + strandat 1011.645 kb on + strandat 1011.646 kb on - strandat 1011.682 kb on - strandat 1011.684 kb on - strandat 1011.684 kb on - strandat 1011.684 kb on - strandat 1011.684 kb on - strandat 1011.690 kb on - strandat 1011.738 kb on + strandat 1011.766 kb on - strand, within BACOVA_05502at 1011.767 kb on + strand, within BACOVA_05502at 1011.767 kb on + strand, within BACOVA_05502at 1011.767 kb on + strand, within BACOVA_05502at 1011.767 kb on + strand, within BACOVA_05502at 1011.819 kb on - strand, within BACOVA_05502at 1011.829 kb on - strand, within BACOVA_05502at 1012.024 kb on + strand, within BACOVA_05502at 1012.132 kb on - strand, within BACOVA_05502at 1012.155 kb on - strand, within BACOVA_05502at 1012.212 kb on + strand, within BACOVA_05502at 1012.299 kb on - strand, within BACOVA_05502at 1012.301 kb on - strand, within BACOVA_05502at 1012.510 kb on + strand, within BACOVA_05503at 1012.534 kb on - strand, within BACOVA_05503at 1012.544 kb on + strand, within BACOVA_05503at 1012.572 kb on + strand, within BACOVA_05503at 1012.572 kb on + strand, within BACOVA_05503at 1012.572 kb on + strand, within BACOVA_05503at 1012.591 kb on + strandat 1012.592 kb on - strandat 1012.602 kb on + strandat 1012.633 kb on - strandat 1012.679 kb on - strandat 1012.690 kb on - strandat 1012.695 kb on - strandat 1012.706 kb on - strandat 1012.706 kb on - strandat 1012.709 kb on + strandat 1012.709 kb on + strandat 1012.709 kb on + strandat 1012.710 kb on - strandat 1012.712 kb on + strandat 1012.765 kb on - strandat 1012.876 kb on - strand, within BACOVA_05504at 1012.955 kb on - strand, within BACOVA_05504at 1013.150 kb on - strand, within BACOVA_05504at 1013.242 kb on + strand, within BACOVA_05504at 1013.265 kb on + strand, within BACOVA_05504at 1013.270 kb on - strand, within BACOVA_05504at 1013.294 kb on - strandat 1013.299 kb on + strandat 1013.310 kb on + strandat 1013.310 kb on + strandat 1013.549 kb on + strandat 1013.550 kb on - strandat 1013.550 kb on - strandat 1013.557 kb on + strandat 1013.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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1,011,531 - +0.1
1,011,645 + -0.2
1,011,645 + -0.3
1,011,646 - +0.3
1,011,682 - -0.7
1,011,684 - +0.4
1,011,684 - +1.4
1,011,684 - -0.6
1,011,684 - -0.0
1,011,690 - +0.1
1,011,738 + +0.4
1,011,766 - BACOVA_05502 0.11 -0.7
1,011,767 + BACOVA_05502 0.11 -1.3
1,011,767 + BACOVA_05502 0.11 +0.7
1,011,767 + BACOVA_05502 0.11 -0.9
1,011,767 + BACOVA_05502 0.11 -0.2
1,011,819 - BACOVA_05502 0.18 +1.3
1,011,829 - BACOVA_05502 0.20 +1.4
1,012,024 + BACOVA_05502 0.46 -0.2
1,012,132 - BACOVA_05502 0.61 -1.3
1,012,155 - BACOVA_05502 0.64 +1.0
1,012,212 + BACOVA_05502 0.72 +0.3
1,012,299 - BACOVA_05502 0.83 +0.7
1,012,301 - BACOVA_05502 0.84 +0.5
1,012,510 + BACOVA_05503 0.43 +0.5
1,012,534 - BACOVA_05503 0.61 +0.1
1,012,544 + BACOVA_05503 0.68 -0.3
1,012,572 + BACOVA_05503 0.89 +1.5
1,012,572 + BACOVA_05503 0.89 -1.0
1,012,572 + BACOVA_05503 0.89 -0.1
1,012,591 + -0.2
1,012,592 - -0.1
1,012,602 + +2.0
1,012,633 - +0.3
1,012,679 - +0.2
1,012,690 - +0.4
1,012,695 - -0.0
1,012,706 - -0.5
1,012,706 - -0.2
1,012,709 + +1.0
1,012,709 + +0.3
1,012,709 + -0.9
1,012,710 - +1.0
1,012,712 + +1.0
1,012,765 - +1.0
1,012,876 - BACOVA_05504 0.20 -0.4
1,012,955 - BACOVA_05504 0.34 +0.8
1,013,150 - BACOVA_05504 0.68 -0.4
1,013,242 + BACOVA_05504 0.83 +0.3
1,013,265 + BACOVA_05504 0.87 +0.5
1,013,270 - BACOVA_05504 0.88 +1.0
1,013,294 - -1.3
1,013,299 + +0.0
1,013,310 + +0.2
1,013,310 + +0.2
1,013,549 + +0.0
1,013,550 - -0.4
1,013,550 - -0.4
1,013,557 + -0.1
1,013,583 - -0.9

Or see this region's nucleotide sequence