Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05470

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05469 and BACOVA_05470 are separated by 143 nucleotidesBACOVA_05470 and BACOVA_05471 are separated by 31 nucleotides BACOVA_05469: BACOVA_05469 - transporter, major facilitator family protein, at 959,270 to 960,538 _05469 BACOVA_05470: BACOVA_05470 - ROK family protein, at 960,682 to 961,623 _05470 BACOVA_05471: BACOVA_05471 - Tat pathway signal sequence domain protein, at 961,655 to 963,283 _05471 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 959.774 kb on - strand, within BACOVA_05469at 959.808 kb on - strand, within BACOVA_05469at 959.808 kb on - strand, within BACOVA_05469at 959.811 kb on + strand, within BACOVA_05469at 959.840 kb on + strand, within BACOVA_05469at 959.840 kb on + strand, within BACOVA_05469at 959.841 kb on - strand, within BACOVA_05469at 959.844 kb on + strand, within BACOVA_05469at 959.845 kb on - strand, within BACOVA_05469at 959.869 kb on - strand, within BACOVA_05469at 959.879 kb on - strand, within BACOVA_05469at 959.940 kb on - strand, within BACOVA_05469at 959.940 kb on - strand, within BACOVA_05469at 959.954 kb on + strand, within BACOVA_05469at 959.954 kb on + strand, within BACOVA_05469at 959.955 kb on - strand, within BACOVA_05469at 959.965 kb on + strand, within BACOVA_05469at 959.969 kb on + strand, within BACOVA_05469at 959.976 kb on + strand, within BACOVA_05469at 960.040 kb on + strand, within BACOVA_05469at 960.049 kb on + strand, within BACOVA_05469at 960.052 kb on - strand, within BACOVA_05469at 960.081 kb on + strand, within BACOVA_05469at 960.081 kb on + strand, within BACOVA_05469at 960.081 kb on + strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.086 kb on - strand, within BACOVA_05469at 960.089 kb on + strand, within BACOVA_05469at 960.089 kb on + strand, within BACOVA_05469at 960.089 kb on + strand, within BACOVA_05469at 960.101 kb on + strand, within BACOVA_05469at 960.101 kb on + strand, within BACOVA_05469at 960.101 kb on + strand, within BACOVA_05469at 960.204 kb on - strand, within BACOVA_05469at 960.204 kb on - strand, within BACOVA_05469at 960.255 kb on + strand, within BACOVA_05469at 960.275 kb on + strand, within BACOVA_05469at 960.276 kb on - strand, within BACOVA_05469at 960.314 kb on + strand, within BACOVA_05469at 960.315 kb on - strand, within BACOVA_05469at 960.315 kb on - strand, within BACOVA_05469at 960.400 kb on + strand, within BACOVA_05469at 960.401 kb on - strand, within BACOVA_05469at 960.464 kb on + strandat 960.544 kb on + strandat 960.545 kb on - strandat 960.555 kb on + strandat 960.563 kb on - strandat 960.563 kb on - strandat 960.563 kb on - strandat 960.576 kb on + strandat 960.610 kb on - strandat 960.639 kb on + strandat 960.650 kb on + strandat 960.658 kb on - strandat 960.754 kb on - strandat 960.779 kb on + strand, within BACOVA_05470at 960.779 kb on + strand, within BACOVA_05470at 960.780 kb on - strand, within BACOVA_05470at 960.780 kb on - strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.812 kb on + strand, within BACOVA_05470at 960.870 kb on + strand, within BACOVA_05470at 960.871 kb on - strand, within BACOVA_05470at 960.874 kb on - strand, within BACOVA_05470at 960.939 kb on + strand, within BACOVA_05470at 960.978 kb on + strand, within BACOVA_05470at 961.003 kb on - strand, within BACOVA_05470at 961.037 kb on - strand, within BACOVA_05470at 961.058 kb on + strand, within BACOVA_05470at 961.058 kb on + strand, within BACOVA_05470at 961.059 kb on - strand, within BACOVA_05470at 961.059 kb on - strand, within BACOVA_05470at 961.202 kb on - strand, within BACOVA_05470at 961.208 kb on - strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.244 kb on + strand, within BACOVA_05470at 961.333 kb on + strand, within BACOVA_05470at 961.334 kb on - strand, within BACOVA_05470at 961.334 kb on - strand, within BACOVA_05470at 961.394 kb on - strand, within BACOVA_05470at 961.407 kb on + strand, within BACOVA_05470at 961.407 kb on + strand, within BACOVA_05470at 961.408 kb on - strand, within BACOVA_05470at 961.417 kb on + strand, within BACOVA_05470at 961.417 kb on + strand, within BACOVA_05470at 961.420 kb on - strand, within BACOVA_05470at 961.471 kb on - strand, within BACOVA_05470at 961.565 kb on - strandat 961.577 kb on - strandat 961.603 kb on + strandat 961.610 kb on + strandat 961.610 kb on + strandat 961.633 kb on + strandat 961.634 kb on - strandat 961.636 kb on + strandat 961.636 kb on + strandat 961.636 kb on + strandat 961.640 kb on + strandat 961.640 kb on + strandat 961.640 kb on + strandat 961.643 kb on + strandat 961.643 kb on + strandat 961.644 kb on - strandat 961.718 kb on + strandat 961.718 kb on + strandat 961.718 kb on + strandat 961.722 kb on + strandat 961.722 kb on + strandat 961.723 kb on - strandat 961.726 kb on - strandat 961.728 kb on + strandat 961.764 kb on + strandat 961.973 kb on - strand, within BACOVA_05471at 961.992 kb on + strand, within BACOVA_05471at 961.996 kb on + strand, within BACOVA_05471at 961.996 kb on + strand, within BACOVA_05471at 961.997 kb on - strand, within BACOVA_05471at 962.028 kb on - strand, within BACOVA_05471at 962.032 kb on + strand, within BACOVA_05471at 962.032 kb on + strand, within BACOVA_05471at 962.033 kb on - strand, within BACOVA_05471at 962.108 kb on + strand, within BACOVA_05471at 962.108 kb on + strand, within BACOVA_05471at 962.109 kb on - strand, within BACOVA_05471at 962.109 kb on - strand, within BACOVA_05471at 962.109 kb on - strand, within BACOVA_05471at 962.143 kb on + strand, within BACOVA_05471at 962.161 kb on - strand, within BACOVA_05471at 962.208 kb on - strand, within BACOVA_05471at 962.285 kb on + strand, within BACOVA_05471at 962.286 kb on - strand, within BACOVA_05471at 962.286 kb on - strand, within BACOVA_05471at 962.286 kb on - strand, within BACOVA_05471at 962.296 kb on + strand, within BACOVA_05471at 962.386 kb on + strand, within BACOVA_05471at 962.414 kb on + strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.415 kb on - strand, within BACOVA_05471at 962.444 kb on - strand, within BACOVA_05471at 962.565 kb on + strand, within BACOVA_05471at 962.566 kb on - strand, within BACOVA_05471at 962.566 kb on - strand, within BACOVA_05471at 962.599 kb on + strand, within BACOVA_05471at 962.610 kb on + strand, within BACOVA_05471at 962.610 kb on + strand, within BACOVA_05471

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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959,774 - BACOVA_05469 0.40 +0.0
959,808 - BACOVA_05469 0.42 +0.8
959,808 - BACOVA_05469 0.42 -0.2
959,811 + BACOVA_05469 0.43 -1.3
959,840 + BACOVA_05469 0.45 +0.1
959,840 + BACOVA_05469 0.45 -1.0
959,841 - BACOVA_05469 0.45 -0.4
959,844 + BACOVA_05469 0.45 +0.3
959,845 - BACOVA_05469 0.45 -0.8
959,869 - BACOVA_05469 0.47 -0.8
959,879 - BACOVA_05469 0.48 -0.9
959,940 - BACOVA_05469 0.53 -0.5
959,940 - BACOVA_05469 0.53 -0.6
959,954 + BACOVA_05469 0.54 -1.4
959,954 + BACOVA_05469 0.54 +1.3
959,955 - BACOVA_05469 0.54 -0.6
959,965 + BACOVA_05469 0.55 -1.8
959,969 + BACOVA_05469 0.55 +0.8
959,976 + BACOVA_05469 0.56 -1.1
960,040 + BACOVA_05469 0.61 +1.6
960,049 + BACOVA_05469 0.61 -0.5
960,052 - BACOVA_05469 0.62 -0.7
960,081 + BACOVA_05469 0.64 +0.0
960,081 + BACOVA_05469 0.64 +1.4
960,081 + BACOVA_05469 0.64 -1.5
960,086 - BACOVA_05469 0.64 +1.0
960,086 - BACOVA_05469 0.64 +0.4
960,086 - BACOVA_05469 0.64 +0.0
960,086 - BACOVA_05469 0.64 -0.6
960,089 + BACOVA_05469 0.65 -0.1
960,089 + BACOVA_05469 0.65 -0.9
960,089 + BACOVA_05469 0.65 -2.0
960,101 + BACOVA_05469 0.65 +0.1
960,101 + BACOVA_05469 0.65 -0.0
960,101 + BACOVA_05469 0.65 -2.7
960,204 - BACOVA_05469 0.74 +0.2
960,204 - BACOVA_05469 0.74 +0.3
960,255 + BACOVA_05469 0.78 +0.2
960,275 + BACOVA_05469 0.79 +0.5
960,276 - BACOVA_05469 0.79 -0.5
960,314 + BACOVA_05469 0.82 +0.5
960,315 - BACOVA_05469 0.82 +1.7
960,315 - BACOVA_05469 0.82 -0.3
960,400 + BACOVA_05469 0.89 -0.0
960,401 - BACOVA_05469 0.89 -0.4
960,464 + -0.8
960,544 + +0.3
960,545 - -1.5
960,555 + -1.1
960,563 - +2.1
960,563 - +1.6
960,563 - +0.0
960,576 + -0.9
960,610 - +1.2
960,639 + -0.6
960,650 + -1.9
960,658 - -1.4
960,754 - -0.5
960,779 + BACOVA_05470 0.10 +0.0
960,779 + BACOVA_05470 0.10 -0.9
960,780 - BACOVA_05470 0.10 -0.4
960,780 - BACOVA_05470 0.10 +0.2
960,812 + BACOVA_05470 0.14 +0.8
960,812 + BACOVA_05470 0.14 -0.1
960,812 + BACOVA_05470 0.14 -0.3
960,812 + BACOVA_05470 0.14 +0.0
960,870 + BACOVA_05470 0.20 -1.0
960,871 - BACOVA_05470 0.20 +1.0
960,874 - BACOVA_05470 0.20 +1.2
960,939 + BACOVA_05470 0.27 -2.2
960,978 + BACOVA_05470 0.31 -1.3
961,003 - BACOVA_05470 0.34 -1.3
961,037 - BACOVA_05470 0.38 -0.8
961,058 + BACOVA_05470 0.40 +0.0
961,058 + BACOVA_05470 0.40 -1.4
961,059 - BACOVA_05470 0.40 -0.9
961,059 - BACOVA_05470 0.40 +0.5
961,202 - BACOVA_05470 0.55 -0.0
961,208 - BACOVA_05470 0.56 -0.5
961,244 + BACOVA_05470 0.60 -1.5
961,244 + BACOVA_05470 0.60 -0.1
961,244 + BACOVA_05470 0.60 -1.3
961,333 + BACOVA_05470 0.69 -0.5
961,334 - BACOVA_05470 0.69 -0.3
961,334 - BACOVA_05470 0.69 +0.0
961,394 - BACOVA_05470 0.76 +0.3
961,407 + BACOVA_05470 0.77 +0.5
961,407 + BACOVA_05470 0.77 -0.6
961,408 - BACOVA_05470 0.77 -1.9
961,417 + BACOVA_05470 0.78 -0.4
961,417 + BACOVA_05470 0.78 +0.2
961,420 - BACOVA_05470 0.78 -1.1
961,471 - BACOVA_05470 0.84 +0.6
961,565 - -0.7
961,577 - -1.4
961,603 + -1.0
961,610 + -1.3
961,610 + +1.2
961,633 + +1.2
961,634 - +1.2
961,636 + -0.2
961,636 + -0.2
961,636 + +0.0
961,640 + -0.7
961,640 + -0.1
961,640 + -2.0
961,643 + +0.8
961,643 + -1.4
961,644 - +1.2
961,718 + +0.6
961,718 + -0.3
961,718 + -1.4
961,722 + -1.1
961,722 + -0.3
961,723 - +6.3
961,726 - +5.9
961,728 + -1.7
961,764 + -0.5
961,973 - BACOVA_05471 0.20 +2.9
961,992 + BACOVA_05471 0.21 -3.4
961,996 + BACOVA_05471 0.21 -0.3
961,996 + BACOVA_05471 0.21 +0.5
961,997 - BACOVA_05471 0.21 +4.1
962,028 - BACOVA_05471 0.23 +5.8
962,032 + BACOVA_05471 0.23 +0.3
962,032 + BACOVA_05471 0.23 +0.2
962,033 - BACOVA_05471 0.23 +4.9
962,108 + BACOVA_05471 0.28 -0.4
962,108 + BACOVA_05471 0.28 -2.5
962,109 - BACOVA_05471 0.28 +5.1
962,109 - BACOVA_05471 0.28 +3.2
962,109 - BACOVA_05471 0.28 +4.4
962,143 + BACOVA_05471 0.30 +1.6
962,161 - BACOVA_05471 0.31 +4.4
962,208 - BACOVA_05471 0.34 +4.4
962,285 + BACOVA_05471 0.39 -0.2
962,286 - BACOVA_05471 0.39 +5.1
962,286 - BACOVA_05471 0.39 +4.3
962,286 - BACOVA_05471 0.39 +4.8
962,296 + BACOVA_05471 0.39 -1.3
962,386 + BACOVA_05471 0.45 -2.7
962,414 + BACOVA_05471 0.47 +0.9
962,415 - BACOVA_05471 0.47 +4.3
962,415 - BACOVA_05471 0.47 +5.5
962,415 - BACOVA_05471 0.47 +5.7
962,415 - BACOVA_05471 0.47 +5.2
962,444 - BACOVA_05471 0.48 +2.1
962,565 + BACOVA_05471 0.56 -1.0
962,566 - BACOVA_05471 0.56 +1.9
962,566 - BACOVA_05471 0.56 +3.9
962,599 + BACOVA_05471 0.58 -0.3
962,610 + BACOVA_05471 0.59 -0.2
962,610 + BACOVA_05471 0.59 -0.1

Or see this region's nucleotide sequence