Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05308

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05306 and BACOVA_05307 are separated by 75 nucleotidesBACOVA_05307 and BACOVA_05308 are separated by 120 nucleotidesBACOVA_05308 and BACOVA_05309 are separated by 115 nucleotides BACOVA_05306: BACOVA_05306 - pseudouridine synthase, RluA family, at 795,228 to 796,922 _05306 BACOVA_05307: BACOVA_05307 - hypothetical protein, at 796,998 to 797,525 _05307 BACOVA_05308: BACOVA_05308 - MaoC-like protein, at 797,646 to 798,110 _05308 BACOVA_05309: BACOVA_05309 - linear amide C-N hydrolase, choloylglycine hydrolase family protein, at 798,226 to 799,170 _05309 Position (kb) 797 798 799Strain fitness (log2 ratio) -2 -1 0 1 2 3at 796.712 kb on + strand, within BACOVA_05306at 796.713 kb on - strand, within BACOVA_05306at 796.725 kb on - strand, within BACOVA_05306at 796.770 kb on + strandat 796.770 kb on + strandat 796.850 kb on + strandat 796.851 kb on - strandat 796.917 kb on + strandat 796.918 kb on - strandat 796.918 kb on - strandat 796.929 kb on - strandat 796.930 kb on + strandat 796.931 kb on - strandat 796.932 kb on + strandat 796.932 kb on + strandat 796.933 kb on - strandat 796.934 kb on + strandat 796.935 kb on - strandat 796.935 kb on - strandat 796.950 kb on + strandat 796.951 kb on - strandat 796.982 kb on + strandat 796.983 kb on - strandat 797.003 kb on + strandat 797.003 kb on + strandat 797.003 kb on + strandat 797.003 kb on + strandat 797.100 kb on + strand, within BACOVA_05307at 797.128 kb on - strand, within BACOVA_05307at 797.192 kb on + strand, within BACOVA_05307at 797.217 kb on - strand, within BACOVA_05307at 797.277 kb on + strand, within BACOVA_05307at 797.300 kb on + strand, within BACOVA_05307at 797.300 kb on + strand, within BACOVA_05307at 797.307 kb on + strand, within BACOVA_05307at 797.308 kb on - strand, within BACOVA_05307at 797.316 kb on + strand, within BACOVA_05307at 797.317 kb on - strand, within BACOVA_05307at 797.403 kb on - strand, within BACOVA_05307at 797.482 kb on - strandat 797.534 kb on + strandat 797.535 kb on - strandat 797.538 kb on + strandat 797.538 kb on + strandat 797.556 kb on + strandat 797.576 kb on + strandat 797.577 kb on - strandat 797.617 kb on - strandat 797.617 kb on - strandat 797.620 kb on + strandat 797.621 kb on - strandat 797.692 kb on + strandat 797.692 kb on + strandat 797.704 kb on + strand, within BACOVA_05308at 797.742 kb on - strand, within BACOVA_05308at 797.788 kb on + strand, within BACOVA_05308at 797.789 kb on - strand, within BACOVA_05308at 797.809 kb on + strand, within BACOVA_05308at 797.810 kb on - strand, within BACOVA_05308at 797.813 kb on + strand, within BACOVA_05308at 797.826 kb on - strand, within BACOVA_05308at 797.826 kb on - strand, within BACOVA_05308at 797.869 kb on - strand, within BACOVA_05308at 797.894 kb on - strand, within BACOVA_05308at 797.897 kb on + strand, within BACOVA_05308at 797.898 kb on - strand, within BACOVA_05308at 797.919 kb on + strand, within BACOVA_05308at 797.920 kb on - strand, within BACOVA_05308at 797.920 kb on - strand, within BACOVA_05308at 797.954 kb on - strand, within BACOVA_05308at 797.984 kb on + strand, within BACOVA_05308at 798.088 kb on + strandat 798.089 kb on - strandat 798.096 kb on + strandat 798.159 kb on - strandat 798.313 kb on - strandat 798.316 kb on + strandat 798.316 kb on + strandat 798.317 kb on - strandat 798.375 kb on + strand, within BACOVA_05309at 798.375 kb on + strand, within BACOVA_05309at 798.379 kb on - strand, within BACOVA_05309at 798.405 kb on - strand, within BACOVA_05309at 798.482 kb on + strand, within BACOVA_05309at 798.496 kb on - strand, within BACOVA_05309at 798.514 kb on + strand, within BACOVA_05309at 798.529 kb on + strand, within BACOVA_05309at 798.529 kb on + strand, within BACOVA_05309at 798.542 kb on + strand, within BACOVA_05309at 798.671 kb on + strand, within BACOVA_05309at 798.671 kb on + strand, within BACOVA_05309at 798.671 kb on + strand, within BACOVA_05309at 798.671 kb on + strand, within BACOVA_05309at 798.735 kb on + strand, within BACOVA_05309at 798.736 kb on - strand, within BACOVA_05309at 798.736 kb on - strand, within BACOVA_05309at 798.737 kb on + strand, within BACOVA_05309at 798.826 kb on + strand, within BACOVA_05309at 798.891 kb on + strand, within BACOVA_05309at 798.892 kb on - strand, within BACOVA_05309at 798.892 kb on - strand, within BACOVA_05309at 798.893 kb on + strand, within BACOVA_05309at 798.894 kb on - strand, within BACOVA_05309at 798.894 kb on - strand, within BACOVA_05309at 798.968 kb on - strand, within BACOVA_05309at 799.046 kb on + strand, within BACOVA_05309

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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796,712 + BACOVA_05306 0.88 +0.2
796,713 - BACOVA_05306 0.88 -1.0
796,725 - BACOVA_05306 0.88 -1.9
796,770 + +0.6
796,770 + -0.8
796,850 + -2.5
796,851 - -0.2
796,917 + -0.8
796,918 - -0.5
796,918 - -0.3
796,929 - -2.0
796,930 + +0.5
796,931 - -0.8
796,932 + -0.8
796,932 + -1.1
796,933 - -0.8
796,934 + -1.5
796,935 - +0.4
796,935 - -0.6
796,950 + -1.6
796,951 - -0.7
796,982 + -0.3
796,983 - +1.1
797,003 + -1.7
797,003 + -0.3
797,003 + +2.1
797,003 + -1.7
797,100 + BACOVA_05307 0.19 -0.1
797,128 - BACOVA_05307 0.25 -0.3
797,192 + BACOVA_05307 0.37 -1.1
797,217 - BACOVA_05307 0.41 +1.0
797,277 + BACOVA_05307 0.53 +0.7
797,300 + BACOVA_05307 0.57 +0.5
797,300 + BACOVA_05307 0.57 +0.2
797,307 + BACOVA_05307 0.59 +0.8
797,308 - BACOVA_05307 0.59 +0.1
797,316 + BACOVA_05307 0.60 -0.3
797,317 - BACOVA_05307 0.60 +1.2
797,403 - BACOVA_05307 0.77 -0.2
797,482 - +0.7
797,534 + -0.7
797,535 - -0.4
797,538 + +1.0
797,538 + +2.8
797,556 + -1.4
797,576 + +0.1
797,577 - +1.2
797,617 - +0.4
797,617 - -0.5
797,620 + +0.5
797,621 - -1.5
797,692 + +1.7
797,692 + -2.0
797,704 + BACOVA_05308 0.12 +0.9
797,742 - BACOVA_05308 0.21 -0.9
797,788 + BACOVA_05308 0.31 +1.2
797,789 - BACOVA_05308 0.31 +0.7
797,809 + BACOVA_05308 0.35 -0.7
797,810 - BACOVA_05308 0.35 +0.8
797,813 + BACOVA_05308 0.36 +0.2
797,826 - BACOVA_05308 0.39 +1.2
797,826 - BACOVA_05308 0.39 -0.2
797,869 - BACOVA_05308 0.48 +0.1
797,894 - BACOVA_05308 0.53 +0.4
797,897 + BACOVA_05308 0.54 -0.9
797,898 - BACOVA_05308 0.54 +1.2
797,919 + BACOVA_05308 0.59 -1.4
797,920 - BACOVA_05308 0.59 +0.4
797,920 - BACOVA_05308 0.59 +2.5
797,954 - BACOVA_05308 0.66 +0.9
797,984 + BACOVA_05308 0.73 -0.6
798,088 + -1.5
798,089 - -1.6
798,096 + -0.7
798,159 - -0.6
798,313 - +0.7
798,316 + -1.6
798,316 + -0.7
798,317 - +0.9
798,375 + BACOVA_05309 0.16 +0.6
798,375 + BACOVA_05309 0.16 -0.6
798,379 - BACOVA_05309 0.16 -2.3
798,405 - BACOVA_05309 0.19 +0.8
798,482 + BACOVA_05309 0.27 -0.6
798,496 - BACOVA_05309 0.29 +0.1
798,514 + BACOVA_05309 0.30 -0.7
798,529 + BACOVA_05309 0.32 -0.6
798,529 + BACOVA_05309 0.32 +0.4
798,542 + BACOVA_05309 0.33 +1.3
798,671 + BACOVA_05309 0.47 -0.2
798,671 + BACOVA_05309 0.47 +0.0
798,671 + BACOVA_05309 0.47 +0.8
798,671 + BACOVA_05309 0.47 +1.1
798,735 + BACOVA_05309 0.54 -0.8
798,736 - BACOVA_05309 0.54 -0.4
798,736 - BACOVA_05309 0.54 +0.5
798,737 + BACOVA_05309 0.54 -0.7
798,826 + BACOVA_05309 0.63 +1.5
798,891 + BACOVA_05309 0.70 +0.3
798,892 - BACOVA_05309 0.70 -0.6
798,892 - BACOVA_05309 0.70 -0.9
798,893 + BACOVA_05309 0.71 -1.8
798,894 - BACOVA_05309 0.71 -1.5
798,894 - BACOVA_05309 0.71 +0.5
798,968 - BACOVA_05309 0.79 +0.1
799,046 + BACOVA_05309 0.87 +0.5

Or see this region's nucleotide sequence