Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05294 and BACOVA_05295 are separated by 112 nucleotides BACOVA_05295 and BACOVA_05296 are separated by 58 nucleotides BACOVA_05296 and BACOVA_05297 overlap by 13 nucleotides BACOVA_05297 and BACOVA_05298 are separated by 56 nucleotides BACOVA_05298 and BACOVA_05299 are separated by 118 nucleotides
BACOVA_05294: BACOVA_05294 - TIGR01777 family protein, at 786,850 to 788,163
_05294
BACOVA_05295: BACOVA_05295 - hypothetical protein, at 788,276 to 788,542
_05295
BACOVA_05296: BACOVA_05296 - hypothetical protein, at 788,601 to 788,819
_05296
BACOVA_05297: BACOVA_05297 - Virulence-associated protein D (VapD) conserved region, at 788,807 to 789,091
_05297
BACOVA_05298: BACOVA_05298 - hypothetical protein, at 789,148 to 789,417
_05298
BACOVA_05299: BACOVA_05299 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 789,536 to 790,267
_05299
Position (kb) 788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 787.278 kb on + strand, within BACOVA_05294 at 787.278 kb on + strand, within BACOVA_05294 at 787.414 kb on + strand, within BACOVA_05294 at 787.475 kb on + strand, within BACOVA_05294 at 787.476 kb on - strand, within BACOVA_05294 at 787.476 kb on - strand, within BACOVA_05294 at 787.477 kb on + strand, within BACOVA_05294 at 787.478 kb on - strand, within BACOVA_05294 at 787.479 kb on + strand, within BACOVA_05294 at 787.480 kb on - strand, within BACOVA_05294 at 787.480 kb on - strand, within BACOVA_05294 at 787.480 kb on - strand, within BACOVA_05294 at 787.510 kb on + strand, within BACOVA_05294 at 787.562 kb on + strand, within BACOVA_05294 at 787.589 kb on + strand, within BACOVA_05294 at 787.589 kb on + strand, within BACOVA_05294 at 787.590 kb on - strand, within BACOVA_05294 at 787.590 kb on - strand, within BACOVA_05294 at 787.590 kb on - strand, within BACOVA_05294 at 787.590 kb on - strand, within BACOVA_05294 at 787.590 kb on - strand, within BACOVA_05294 at 787.590 kb on - strand, within BACOVA_05294 at 787.591 kb on + strand, within BACOVA_05294 at 787.592 kb on - strand, within BACOVA_05294 at 787.710 kb on + strand, within BACOVA_05294 at 787.713 kb on + strand, within BACOVA_05294 at 787.714 kb on - strand, within BACOVA_05294 at 787.714 kb on - strand, within BACOVA_05294 at 787.714 kb on - strand, within BACOVA_05294 at 787.719 kb on + strand, within BACOVA_05294 at 787.720 kb on - strand, within BACOVA_05294 at 787.720 kb on - strand, within BACOVA_05294 at 787.741 kb on + strand, within BACOVA_05294 at 787.812 kb on + strand, within BACOVA_05294 at 787.812 kb on + strand, within BACOVA_05294 at 787.817 kb on - strand, within BACOVA_05294 at 787.879 kb on + strand, within BACOVA_05294 at 787.880 kb on - strand, within BACOVA_05294 at 787.917 kb on - strand, within BACOVA_05294 at 787.981 kb on + strand, within BACOVA_05294 at 787.981 kb on + strand, within BACOVA_05294 at 788.015 kb on - strand, within BACOVA_05294 at 788.035 kb on - strand at 788.040 kb on + strand at 788.044 kb on + strand at 788.045 kb on - strand at 788.045 kb on - strand at 788.045 kb on - strand at 788.057 kb on + strand at 788.058 kb on - strand at 788.058 kb on - strand at 788.130 kb on + strand at 788.175 kb on + strand at 788.175 kb on + strand at 788.175 kb on + strand at 788.175 kb on + strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.176 kb on - strand at 788.180 kb on - strand at 788.180 kb on - strand at 788.180 kb on - strand at 788.181 kb on + strand at 788.181 kb on + strand at 788.190 kb on - strand at 788.207 kb on + strand at 788.214 kb on + strand at 788.216 kb on + strand at 788.217 kb on - strand at 788.239 kb on + strand at 788.291 kb on - strand at 788.328 kb on + strand, within BACOVA_05295 at 788.350 kb on - strand, within BACOVA_05295 at 788.365 kb on - strand, within BACOVA_05295 at 788.381 kb on - strand, within BACOVA_05295 at 788.451 kb on - strand, within BACOVA_05295 at 788.463 kb on + strand, within BACOVA_05295 at 788.464 kb on - strand, within BACOVA_05295 at 788.499 kb on - strand, within BACOVA_05295 at 788.540 kb on + strand at 788.541 kb on - strand at 788.577 kb on + strand at 788.580 kb on + strand at 788.681 kb on - strand, within BACOVA_05296 at 788.791 kb on + strand, within BACOVA_05296 at 788.806 kb on + strand at 788.806 kb on + strand at 788.806 kb on + strand at 788.807 kb on - strand at 788.807 kb on - strand at 788.807 kb on - strand at 788.810 kb on + strand at 788.817 kb on + strand at 788.818 kb on - strand at 788.827 kb on + strand at 788.827 kb on + strand at 788.837 kb on - strand, within BACOVA_05297 at 788.868 kb on - strand, within BACOVA_05297 at 788.869 kb on + strand, within BACOVA_05297 at 788.879 kb on + strand, within BACOVA_05297 at 788.890 kb on - strand, within BACOVA_05297 at 788.890 kb on - strand, within BACOVA_05297 at 788.920 kb on + strand, within BACOVA_05297 at 788.937 kb on + strand, within BACOVA_05297 at 788.937 kb on + strand, within BACOVA_05297 at 788.943 kb on + strand, within BACOVA_05297 at 788.959 kb on + strand, within BACOVA_05297 at 789.072 kb on + strand at 789.073 kb on + strand at 789.090 kb on - strand at 789.093 kb on + strand at 789.093 kb on + strand at 789.094 kb on - strand at 789.115 kb on + strand at 789.215 kb on + strand, within BACOVA_05298 at 789.215 kb on + strand, within BACOVA_05298 at 789.234 kb on + strand, within BACOVA_05298 at 789.261 kb on + strand, within BACOVA_05298 at 789.285 kb on + strand, within BACOVA_05298 at 789.285 kb on + strand, within BACOVA_05298 at 789.286 kb on - strand, within BACOVA_05298 at 789.286 kb on - strand, within BACOVA_05298 at 789.321 kb on - strand, within BACOVA_05298 at 789.329 kb on + strand, within BACOVA_05298 at 789.346 kb on - strand, within BACOVA_05298 at 789.388 kb on - strand, within BACOVA_05298 at 789.435 kb on + strand at 789.441 kb on + strand at 789.470 kb on - strand at 789.502 kb on - strand at 789.509 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 787,278 + BACOVA_05294 0.33 +0.2 787,278 + BACOVA_05294 0.33 +1.2 787,414 + BACOVA_05294 0.43 +1.2 787,475 + BACOVA_05294 0.48 +6.5 787,476 - BACOVA_05294 0.48 -0.1 787,476 - BACOVA_05294 0.48 +0.9 787,477 + BACOVA_05294 0.48 -1.0 787,478 - BACOVA_05294 0.48 -1.7 787,479 + BACOVA_05294 0.48 +0.1 787,480 - BACOVA_05294 0.48 +0.6 787,480 - BACOVA_05294 0.48 +0.1 787,480 - BACOVA_05294 0.48 -0.3 787,510 + BACOVA_05294 0.50 -1.9 787,562 + BACOVA_05294 0.54 -0.6 787,589 + BACOVA_05294 0.56 -0.3 787,589 + BACOVA_05294 0.56 +0.5 787,590 - BACOVA_05294 0.56 +0.5 787,590 - BACOVA_05294 0.56 +0.3 787,590 - BACOVA_05294 0.56 -0.3 787,590 - BACOVA_05294 0.56 +0.6 787,590 - BACOVA_05294 0.56 -0.5 787,590 - BACOVA_05294 0.56 +0.7 787,591 + BACOVA_05294 0.56 +1.0 787,592 - BACOVA_05294 0.56 +1.4 787,710 + BACOVA_05294 0.65 -1.1 787,713 + BACOVA_05294 0.66 +0.2 787,714 - BACOVA_05294 0.66 -1.7 787,714 - BACOVA_05294 0.66 -0.4 787,714 - BACOVA_05294 0.66 -0.2 787,719 + BACOVA_05294 0.66 +0.9 787,720 - BACOVA_05294 0.66 +1.4 787,720 - BACOVA_05294 0.66 -1.9 787,741 + BACOVA_05294 0.68 +0.9 787,812 + BACOVA_05294 0.73 +1.4 787,812 + BACOVA_05294 0.73 +1.2 787,817 - BACOVA_05294 0.74 +0.1 787,879 + BACOVA_05294 0.78 -0.1 787,880 - BACOVA_05294 0.78 +1.2 787,917 - BACOVA_05294 0.81 -1.8 787,981 + BACOVA_05294 0.86 -0.7 787,981 + BACOVA_05294 0.86 +0.4 788,015 - BACOVA_05294 0.89 -0.7 788,035 - -0.9 788,040 + +0.6 788,044 + +0.0 788,045 - -0.6 788,045 - -2.2 788,045 - -0.9 788,057 + -0.9 788,058 - +0.4 788,058 - -1.1 788,130 + +1.1 788,175 + +0.5 788,175 + -1.2 788,175 + -1.1 788,175 + -0.8 788,176 - -0.4 788,176 - -0.4 788,176 - -0.9 788,176 - -0.5 788,176 - +0.7 788,176 - -0.9 788,180 - +0.3 788,180 - +0.7 788,180 - -1.5 788,181 + -0.3 788,181 + +1.5 788,190 - -0.4 788,207 + -0.9 788,214 + -1.5 788,216 + -0.3 788,217 - -0.6 788,239 + -1.1 788,291 - -0.2 788,328 + BACOVA_05295 0.19 -0.2 788,350 - BACOVA_05295 0.28 +1.5 788,365 - BACOVA_05295 0.33 -1.0 788,381 - BACOVA_05295 0.39 -1.1 788,451 - BACOVA_05295 0.66 -0.7 788,463 + BACOVA_05295 0.70 +0.2 788,464 - BACOVA_05295 0.70 +0.7 788,499 - BACOVA_05295 0.84 -0.3 788,540 + -2.3 788,541 - -1.3 788,577 + +0.7 788,580 + +1.4 788,681 - BACOVA_05296 0.37 -0.3 788,791 + BACOVA_05296 0.87 +0.7 788,806 + -2.0 788,806 + +1.5 788,806 + +0.4 788,807 - +0.8 788,807 - +0.2 788,807 - +1.2 788,810 + +1.2 788,817 + -1.5 788,818 - -3.7 788,827 + -0.8 788,827 + +1.9 788,837 - BACOVA_05297 0.11 +0.5 788,868 - BACOVA_05297 0.21 +2.3 788,869 + BACOVA_05297 0.22 +0.2 788,879 + BACOVA_05297 0.25 +2.1 788,890 - BACOVA_05297 0.29 -0.5 788,890 - BACOVA_05297 0.29 -0.2 788,920 + BACOVA_05297 0.40 +0.4 788,937 + BACOVA_05297 0.46 +1.5 788,937 + BACOVA_05297 0.46 -2.5 788,943 + BACOVA_05297 0.48 +0.9 788,959 + BACOVA_05297 0.53 -0.1 789,072 + -0.4 789,073 + -0.9 789,090 - +0.7 789,093 + +0.1 789,093 + -0.4 789,094 - -0.3 789,115 + -1.0 789,215 + BACOVA_05298 0.25 +0.3 789,215 + BACOVA_05298 0.25 -0.1 789,234 + BACOVA_05298 0.32 +0.1 789,261 + BACOVA_05298 0.42 -0.4 789,285 + BACOVA_05298 0.51 +0.7 789,285 + BACOVA_05298 0.51 +0.4 789,286 - BACOVA_05298 0.51 -0.7 789,286 - BACOVA_05298 0.51 -0.2 789,321 - BACOVA_05298 0.64 -0.1 789,329 + BACOVA_05298 0.67 -0.9 789,346 - BACOVA_05298 0.73 +0.2 789,388 - BACOVA_05298 0.89 -0.3 789,435 + -0.4 789,441 + -2.1 789,470 - +0.7 789,502 - +0.4 789,509 + +1.3
Or see this region's nucleotide sequence