Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05167 and BACOVA_05168 are separated by 105 nucleotides BACOVA_05168 and BACOVA_05169 are separated by 12 nucleotides BACOVA_05169 and BACOVA_05170 overlap by 97 nucleotides BACOVA_05170 and BACOVA_05171 are separated by 140 nucleotides BACOVA_05171 and BACOVA_05172 are separated by 65 nucleotides
BACOVA_05167: BACOVA_05167 - hypothetical protein, at 653,887 to 654,354
_05167
BACOVA_05168: BACOVA_05168 - MazG family protein, at 654,460 to 655,248
_05168
BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244
_05169
BACOVA_05170: BACOVA_05170 - hypothetical protein, at 656,148 to 656,315
_05170
BACOVA_05171: BACOVA_05171 - hypothetical protein, at 656,456 to 657,094
_05171
BACOVA_05172: BACOVA_05172 - valine--tRNA ligase, at 657,160 to 659,796
_05172
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.303 kb on - strand, within BACOVA_05167 at 654.414 kb on + strand at 654.427 kb on + strand at 654.462 kb on - strand at 654.516 kb on + strand at 654.517 kb on - strand at 654.560 kb on + strand, within BACOVA_05168 at 654.560 kb on + strand, within BACOVA_05168 at 654.721 kb on + strand, within BACOVA_05168 at 654.775 kb on + strand, within BACOVA_05168 at 654.803 kb on + strand, within BACOVA_05168 at 654.814 kb on - strand, within BACOVA_05168 at 654.847 kb on + strand, within BACOVA_05168 at 654.847 kb on + strand, within BACOVA_05168 at 654.847 kb on + strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.848 kb on - strand, within BACOVA_05168 at 654.855 kb on + strand, within BACOVA_05168 at 654.856 kb on - strand, within BACOVA_05168 at 655.023 kb on + strand, within BACOVA_05168 at 655.023 kb on + strand, within BACOVA_05168 at 655.023 kb on + strand, within BACOVA_05168 at 655.024 kb on - strand, within BACOVA_05168 at 655.028 kb on + strand, within BACOVA_05168 at 655.048 kb on + strand, within BACOVA_05168 at 655.048 kb on + strand, within BACOVA_05168 at 655.049 kb on - strand, within BACOVA_05168 at 655.113 kb on - strand, within BACOVA_05168 at 655.123 kb on + strand, within BACOVA_05168 at 655.123 kb on + strand, within BACOVA_05168 at 655.248 kb on + strand at 655.248 kb on + strand at 655.249 kb on - strand at 655.249 kb on - strand at 655.291 kb on + strand at 655.303 kb on + strand at 655.304 kb on - strand at 655.307 kb on - strand at 655.336 kb on + strand at 655.336 kb on + strand at 655.364 kb on + strand, within BACOVA_05169 at 655.366 kb on + strand, within BACOVA_05169 at 655.401 kb on - strand, within BACOVA_05169 at 655.401 kb on - strand, within BACOVA_05169 at 655.416 kb on - strand, within BACOVA_05169 at 655.416 kb on - strand, within BACOVA_05169 at 655.478 kb on + strand, within BACOVA_05169 at 655.538 kb on + strand, within BACOVA_05169 at 655.621 kb on - strand, within BACOVA_05169 at 655.624 kb on + strand, within BACOVA_05169 at 655.625 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.662 kb on - strand, within BACOVA_05169 at 655.732 kb on + strand, within BACOVA_05169 at 655.810 kb on - strand, within BACOVA_05169 at 655.849 kb on + strand, within BACOVA_05169 at 655.894 kb on + strand, within BACOVA_05169 at 655.895 kb on - strand, within BACOVA_05169 at 655.905 kb on + strand, within BACOVA_05169 at 655.906 kb on - strand, within BACOVA_05169 at 655.908 kb on - strand, within BACOVA_05169 at 655.944 kb on - strand, within BACOVA_05169 at 655.950 kb on + strand, within BACOVA_05169 at 655.951 kb on + strand, within BACOVA_05169 at 655.991 kb on + strand, within BACOVA_05169 at 656.012 kb on + strand, within BACOVA_05169 at 656.020 kb on + strand, within BACOVA_05169 at 656.021 kb on - strand, within BACOVA_05169 at 656.024 kb on + strand, within BACOVA_05169 at 656.024 kb on + strand, within BACOVA_05169 at 656.082 kb on + strand, within BACOVA_05169 at 656.097 kb on - strand, within BACOVA_05169 at 656.097 kb on - strand, within BACOVA_05169 at 656.109 kb on + strand, within BACOVA_05169 at 656.127 kb on + strand, within BACOVA_05169 at 656.127 kb on + strand, within BACOVA_05169 at 656.128 kb on - strand, within BACOVA_05169 at 656.128 kb on - strand, within BACOVA_05169 at 656.137 kb on - strand, within BACOVA_05169 at 656.137 kb on - strand, within BACOVA_05169 at 656.140 kb on + strand, within BACOVA_05169 at 656.141 kb on - strand, within BACOVA_05169 at 656.141 kb on - strand, within BACOVA_05169 at 656.164 kb on + strand at 656.204 kb on - strand at 656.219 kb on - strand at 656.284 kb on - strand, within BACOVA_05170 at 656.340 kb on + strand at 656.379 kb on - strand at 656.379 kb on - strand at 656.411 kb on - strand at 656.418 kb on - strand at 656.419 kb on + strand at 656.420 kb on - strand at 656.461 kb on + strand at 656.521 kb on + strand, within BACOVA_05171 at 656.542 kb on + strand, within BACOVA_05171 at 656.543 kb on - strand, within BACOVA_05171 at 656.697 kb on - strand, within BACOVA_05171 at 656.713 kb on + strand, within BACOVA_05171 at 656.742 kb on + strand, within BACOVA_05171 at 656.743 kb on - strand, within BACOVA_05171 at 656.773 kb on + strand, within BACOVA_05171 at 656.830 kb on - strand, within BACOVA_05171 at 656.849 kb on - strand, within BACOVA_05171 at 656.862 kb on + strand, within BACOVA_05171 at 656.867 kb on + strand, within BACOVA_05171 at 656.872 kb on + strand, within BACOVA_05171 at 656.872 kb on + strand, within BACOVA_05171 at 656.873 kb on - strand, within BACOVA_05171 at 656.912 kb on - strand, within BACOVA_05171 at 656.958 kb on + strand, within BACOVA_05171 at 656.958 kb on + strand, within BACOVA_05171 at 656.958 kb on + strand, within BACOVA_05171 at 656.973 kb on + strand, within BACOVA_05171 at 657.047 kb on - strand at 657.047 kb on - strand at 657.126 kb on + strand at 657.133 kb on + strand at 657.133 kb on + strand at 657.133 kb on + strand at 657.143 kb on + strand at 657.143 kb on + strand at 657.143 kb on + strand at 657.143 kb on + strand at 657.145 kb on + strand at 657.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 654,303 - BACOVA_05167 0.89 -0.1 654,414 + -2.1 654,427 + +0.7 654,462 - +2.6 654,516 + +1.2 654,517 - -0.8 654,560 + BACOVA_05168 0.13 +0.6 654,560 + BACOVA_05168 0.13 +0.4 654,721 + BACOVA_05168 0.33 -0.5 654,775 + BACOVA_05168 0.40 -1.4 654,803 + BACOVA_05168 0.43 -1.3 654,814 - BACOVA_05168 0.45 -0.0 654,847 + BACOVA_05168 0.49 -0.0 654,847 + BACOVA_05168 0.49 +0.2 654,847 + BACOVA_05168 0.49 +0.6 654,848 - BACOVA_05168 0.49 -1.4 654,848 - BACOVA_05168 0.49 +0.2 654,848 - BACOVA_05168 0.49 -0.8 654,848 - BACOVA_05168 0.49 -1.2 654,855 + BACOVA_05168 0.50 -0.2 654,856 - BACOVA_05168 0.50 +0.4 655,023 + BACOVA_05168 0.71 -1.5 655,023 + BACOVA_05168 0.71 -0.1 655,023 + BACOVA_05168 0.71 +2.0 655,024 - BACOVA_05168 0.71 +0.1 655,028 + BACOVA_05168 0.72 -1.5 655,048 + BACOVA_05168 0.75 -2.3 655,048 + BACOVA_05168 0.75 -0.5 655,049 - BACOVA_05168 0.75 -0.5 655,113 - BACOVA_05168 0.83 -1.1 655,123 + BACOVA_05168 0.84 +0.2 655,123 + BACOVA_05168 0.84 +0.0 655,248 + -2.0 655,248 + +1.6 655,249 - -1.1 655,249 - +1.1 655,291 + -0.9 655,303 + -0.9 655,304 - -0.9 655,307 - -0.9 655,336 + -2.0 655,336 + -1.0 655,364 + BACOVA_05169 0.10 -2.0 655,366 + BACOVA_05169 0.11 +0.2 655,401 - BACOVA_05169 0.14 -0.7 655,401 - BACOVA_05169 0.14 -1.1 655,416 - BACOVA_05169 0.16 +0.3 655,416 - BACOVA_05169 0.16 -0.4 655,478 + BACOVA_05169 0.22 -1.0 655,538 + BACOVA_05169 0.28 +1.2 655,621 - BACOVA_05169 0.37 +1.0 655,624 + BACOVA_05169 0.37 +0.7 655,625 - BACOVA_05169 0.37 +1.0 655,650 - BACOVA_05169 0.40 +0.2 655,650 - BACOVA_05169 0.40 -0.0 655,650 - BACOVA_05169 0.40 +0.3 655,662 - BACOVA_05169 0.41 -1.2 655,732 + BACOVA_05169 0.48 +0.4 655,810 - BACOVA_05169 0.56 +2.6 655,849 + BACOVA_05169 0.60 -0.4 655,894 + BACOVA_05169 0.64 +0.7 655,895 - BACOVA_05169 0.64 -0.9 655,905 + BACOVA_05169 0.65 +1.1 655,906 - BACOVA_05169 0.66 +0.1 655,908 - BACOVA_05169 0.66 -0.9 655,944 - BACOVA_05169 0.69 -0.4 655,950 + BACOVA_05169 0.70 +0.7 655,951 + BACOVA_05169 0.70 +0.0 655,991 + BACOVA_05169 0.74 -1.0 656,012 + BACOVA_05169 0.76 +1.0 656,020 + BACOVA_05169 0.77 +0.3 656,021 - BACOVA_05169 0.77 -0.7 656,024 + BACOVA_05169 0.78 -1.4 656,024 + BACOVA_05169 0.78 +0.1 656,082 + BACOVA_05169 0.83 -0.7 656,097 - BACOVA_05169 0.85 -0.7 656,097 - BACOVA_05169 0.85 -1.4 656,109 + BACOVA_05169 0.86 -0.3 656,127 + BACOVA_05169 0.88 -0.2 656,127 + BACOVA_05169 0.88 +0.6 656,128 - BACOVA_05169 0.88 -1.6 656,128 - BACOVA_05169 0.88 +1.1 656,137 - BACOVA_05169 0.89 -0.3 656,137 - BACOVA_05169 0.89 -1.3 656,140 + BACOVA_05169 0.89 +0.1 656,141 - BACOVA_05169 0.89 -0.5 656,141 - BACOVA_05169 0.89 +1.0 656,164 + -0.3 656,204 - -1.8 656,219 - +1.3 656,284 - BACOVA_05170 0.81 -0.8 656,340 + -1.1 656,379 - -1.6 656,379 - -0.5 656,411 - -3.2 656,418 - -0.5 656,419 + -0.7 656,420 - -0.7 656,461 + +1.2 656,521 + BACOVA_05171 0.10 +0.8 656,542 + BACOVA_05171 0.13 -2.3 656,543 - BACOVA_05171 0.14 -0.4 656,697 - BACOVA_05171 0.38 -0.5 656,713 + BACOVA_05171 0.40 -0.8 656,742 + BACOVA_05171 0.45 -0.1 656,743 - BACOVA_05171 0.45 -0.0 656,773 + BACOVA_05171 0.50 +0.4 656,830 - BACOVA_05171 0.59 -2.0 656,849 - BACOVA_05171 0.62 -1.5 656,862 + BACOVA_05171 0.64 -0.1 656,867 + BACOVA_05171 0.64 +0.7 656,872 + BACOVA_05171 0.65 -1.1 656,872 + BACOVA_05171 0.65 -0.3 656,873 - BACOVA_05171 0.65 +2.1 656,912 - BACOVA_05171 0.71 +0.3 656,958 + BACOVA_05171 0.79 +0.1 656,958 + BACOVA_05171 0.79 -0.1 656,958 + BACOVA_05171 0.79 -2.1 656,973 + BACOVA_05171 0.81 -0.8 657,047 - +1.0 657,047 - +0.2 657,126 + -0.6 657,133 + +0.1 657,133 + -1.6 657,133 + +0.7 657,143 + -0.8 657,143 + +0.3 657,143 + +0.5 657,143 + -0.4 657,145 + -0.8 657,145 + -0.4
Or see this region's nucleotide sequence