Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05116

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05114 and BACOVA_05113 overlap by 15 nucleotidesBACOVA_05113 and BACOVA_05115 are separated by 44 nucleotidesBACOVA_05115 and BACOVA_05116 are separated by 38 nucleotidesBACOVA_05116 and BACOVA_05117 are separated by 26 nucleotidesBACOVA_05117 and BACOVA_05118 are separated by 25 nucleotides BACOVA_05114: BACOVA_05114 - ribosomal protein L21, at 588,083 to 588,448 _05114 BACOVA_05113: BACOVA_05113 - hypothetical protein, at 588,434 to 588,550 _05113 BACOVA_05115: BACOVA_05115 - HAD hydrolase, family IA, variant 1, at 588,595 to 589,233 _05115 BACOVA_05116: BACOVA_05116 - GumN protein, at 589,272 to 590,156 _05116 BACOVA_05117: BACOVA_05117 - NlpC/P60 family protein, at 590,183 to 590,806 _05117 BACOVA_05118: BACOVA_05118 - ABC transporter, ATP-binding protein, at 590,832 to 591,539 _05118 Position (kb) 589 590 591Strain fitness (log2 ratio) -2 -1 0 1 2at 588.549 kb on - strandat 588.596 kb on + strandat 588.596 kb on + strandat 588.596 kb on + strandat 588.741 kb on + strand, within BACOVA_05115at 588.743 kb on + strand, within BACOVA_05115at 588.744 kb on - strand, within BACOVA_05115at 588.744 kb on - strand, within BACOVA_05115at 588.744 kb on - strand, within BACOVA_05115at 588.744 kb on - strand, within BACOVA_05115at 588.744 kb on - strand, within BACOVA_05115at 588.820 kb on + strand, within BACOVA_05115at 588.821 kb on - strand, within BACOVA_05115at 588.841 kb on + strand, within BACOVA_05115at 588.841 kb on + strand, within BACOVA_05115at 588.843 kb on + strand, within BACOVA_05115at 588.866 kb on + strand, within BACOVA_05115at 588.866 kb on + strand, within BACOVA_05115at 588.896 kb on + strand, within BACOVA_05115at 588.955 kb on - strand, within BACOVA_05115at 588.982 kb on - strand, within BACOVA_05115at 588.985 kb on + strand, within BACOVA_05115at 588.985 kb on + strand, within BACOVA_05115at 588.986 kb on - strand, within BACOVA_05115at 588.986 kb on - strand, within BACOVA_05115at 588.997 kb on + strand, within BACOVA_05115at 589.111 kb on - strand, within BACOVA_05115at 589.130 kb on - strand, within BACOVA_05115at 589.133 kb on + strand, within BACOVA_05115at 589.167 kb on + strand, within BACOVA_05115at 589.218 kb on - strandat 589.264 kb on + strandat 589.264 kb on + strandat 589.294 kb on + strandat 589.318 kb on - strandat 589.320 kb on + strandat 589.321 kb on - strandat 589.412 kb on + strand, within BACOVA_05116at 589.415 kb on + strand, within BACOVA_05116at 589.423 kb on + strand, within BACOVA_05116at 589.423 kb on + strand, within BACOVA_05116at 589.424 kb on - strand, within BACOVA_05116at 589.430 kb on + strand, within BACOVA_05116at 589.490 kb on + strand, within BACOVA_05116at 589.491 kb on - strand, within BACOVA_05116at 589.491 kb on - strand, within BACOVA_05116at 589.560 kb on + strand, within BACOVA_05116at 589.560 kb on + strand, within BACOVA_05116at 589.561 kb on - strand, within BACOVA_05116at 589.561 kb on - strand, within BACOVA_05116at 589.561 kb on - strand, within BACOVA_05116at 589.561 kb on - strand, within BACOVA_05116at 589.561 kb on - strand, within BACOVA_05116at 589.563 kb on - strand, within BACOVA_05116at 589.569 kb on - strand, within BACOVA_05116at 589.569 kb on - strand, within BACOVA_05116at 589.581 kb on + strand, within BACOVA_05116at 589.585 kb on - strand, within BACOVA_05116at 589.602 kb on + strand, within BACOVA_05116at 589.602 kb on + strand, within BACOVA_05116at 589.732 kb on - strand, within BACOVA_05116at 589.752 kb on + strand, within BACOVA_05116at 589.758 kb on + strand, within BACOVA_05116at 589.758 kb on + strand, within BACOVA_05116at 589.763 kb on + strand, within BACOVA_05116at 589.764 kb on - strand, within BACOVA_05116at 589.770 kb on + strand, within BACOVA_05116at 589.804 kb on - strand, within BACOVA_05116at 589.963 kb on + strand, within BACOVA_05116at 589.965 kb on + strand, within BACOVA_05116at 589.965 kb on + strand, within BACOVA_05116at 589.965 kb on + strand, within BACOVA_05116at 589.966 kb on - strand, within BACOVA_05116at 589.986 kb on - strand, within BACOVA_05116at 589.995 kb on - strand, within BACOVA_05116at 590.053 kb on + strand, within BACOVA_05116at 590.091 kb on + strandat 590.170 kb on + strandat 590.170 kb on + strandat 590.180 kb on + strandat 590.180 kb on + strandat 590.181 kb on - strandat 590.181 kb on - strandat 590.189 kb on + strandat 590.224 kb on - strandat 590.303 kb on + strand, within BACOVA_05117at 590.304 kb on - strand, within BACOVA_05117at 590.313 kb on - strand, within BACOVA_05117at 590.345 kb on + strand, within BACOVA_05117at 590.345 kb on + strand, within BACOVA_05117at 590.386 kb on + strand, within BACOVA_05117at 590.433 kb on + strand, within BACOVA_05117at 590.435 kb on + strand, within BACOVA_05117at 590.441 kb on - strand, within BACOVA_05117at 590.446 kb on - strand, within BACOVA_05117at 590.459 kb on + strand, within BACOVA_05117at 590.546 kb on - strand, within BACOVA_05117at 590.582 kb on + strand, within BACOVA_05117at 590.584 kb on + strand, within BACOVA_05117at 590.584 kb on + strand, within BACOVA_05117at 590.585 kb on - strand, within BACOVA_05117at 590.607 kb on + strand, within BACOVA_05117at 590.642 kb on - strand, within BACOVA_05117at 590.660 kb on + strand, within BACOVA_05117at 590.661 kb on - strand, within BACOVA_05117at 590.686 kb on - strand, within BACOVA_05117at 590.716 kb on + strand, within BACOVA_05117at 590.716 kb on + strand, within BACOVA_05117at 590.717 kb on - strand, within BACOVA_05117at 590.723 kb on - strand, within BACOVA_05117at 590.745 kb on - strandat 590.745 kb on - strandat 590.747 kb on - strandat 590.748 kb on + strandat 590.749 kb on - strandat 590.749 kb on - strandat 590.749 kb on - strandat 590.758 kb on + strandat 590.762 kb on + strandat 590.807 kb on + strandat 590.812 kb on + strandat 590.813 kb on - strandat 590.844 kb on + strandat 590.850 kb on - strandat 590.855 kb on - strandat 590.897 kb on + strandat 590.944 kb on - strand, within BACOVA_05118at 590.949 kb on + strand, within BACOVA_05118at 590.950 kb on - strand, within BACOVA_05118at 590.955 kb on - strand, within BACOVA_05118at 590.976 kb on + strand, within BACOVA_05118at 590.978 kb on + strand, within BACOVA_05118at 590.982 kb on - strand, within BACOVA_05118at 591.006 kb on - strand, within BACOVA_05118at 591.032 kb on + strand, within BACOVA_05118at 591.032 kb on + strand, within BACOVA_05118at 591.033 kb on - strand, within BACOVA_05118at 591.081 kb on + strand, within BACOVA_05118at 591.081 kb on + strand, within BACOVA_05118at 591.128 kb on + strand, within BACOVA_05118at 591.129 kb on - strand, within BACOVA_05118at 591.131 kb on + strand, within BACOVA_05118at 591.131 kb on + strand, within BACOVA_05118at 591.142 kb on + strand, within BACOVA_05118at 591.142 kb on + strand, within BACOVA_05118at 591.153 kb on + strand, within BACOVA_05118

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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588,549 - +0.2
588,596 + -0.8
588,596 + -1.2
588,596 + +0.7
588,741 + BACOVA_05115 0.23 -0.3
588,743 + BACOVA_05115 0.23 -0.5
588,744 - BACOVA_05115 0.23 +1.4
588,744 - BACOVA_05115 0.23 -0.5
588,744 - BACOVA_05115 0.23 -1.0
588,744 - BACOVA_05115 0.23 +0.4
588,744 - BACOVA_05115 0.23 +1.6
588,820 + BACOVA_05115 0.35 -0.3
588,821 - BACOVA_05115 0.35 +0.2
588,841 + BACOVA_05115 0.38 -0.9
588,841 + BACOVA_05115 0.38 -0.3
588,843 + BACOVA_05115 0.39 -2.3
588,866 + BACOVA_05115 0.42 +1.4
588,866 + BACOVA_05115 0.42 +0.3
588,896 + BACOVA_05115 0.47 +0.1
588,955 - BACOVA_05115 0.56 -0.3
588,982 - BACOVA_05115 0.61 +2.1
588,985 + BACOVA_05115 0.61 -1.0
588,985 + BACOVA_05115 0.61 +0.7
588,986 - BACOVA_05115 0.61 -1.1
588,986 - BACOVA_05115 0.61 +1.8
588,997 + BACOVA_05115 0.63 -1.0
589,111 - BACOVA_05115 0.81 +0.1
589,130 - BACOVA_05115 0.84 -0.8
589,133 + BACOVA_05115 0.84 -1.9
589,167 + BACOVA_05115 0.90 +0.8
589,218 - -0.4
589,264 + -0.3
589,264 + -1.4
589,294 + -0.1
589,318 - +0.2
589,320 + -0.2
589,321 - +1.2
589,412 + BACOVA_05116 0.16 -0.5
589,415 + BACOVA_05116 0.16 +0.9
589,423 + BACOVA_05116 0.17 -0.9
589,423 + BACOVA_05116 0.17 -1.9
589,424 - BACOVA_05116 0.17 +1.0
589,430 + BACOVA_05116 0.18 -2.2
589,490 + BACOVA_05116 0.25 +0.2
589,491 - BACOVA_05116 0.25 -0.1
589,491 - BACOVA_05116 0.25 -0.2
589,560 + BACOVA_05116 0.33 +0.1
589,560 + BACOVA_05116 0.33 +1.4
589,561 - BACOVA_05116 0.33 -0.4
589,561 - BACOVA_05116 0.33 +0.3
589,561 - BACOVA_05116 0.33 -0.4
589,561 - BACOVA_05116 0.33 +0.9
589,561 - BACOVA_05116 0.33 -0.6
589,563 - BACOVA_05116 0.33 +0.5
589,569 - BACOVA_05116 0.34 +0.5
589,569 - BACOVA_05116 0.34 +0.8
589,581 + BACOVA_05116 0.35 -0.3
589,585 - BACOVA_05116 0.35 -0.9
589,602 + BACOVA_05116 0.37 +0.2
589,602 + BACOVA_05116 0.37 -0.1
589,732 - BACOVA_05116 0.52 +0.4
589,752 + BACOVA_05116 0.54 -0.3
589,758 + BACOVA_05116 0.55 -1.3
589,758 + BACOVA_05116 0.55 -0.6
589,763 + BACOVA_05116 0.55 -0.2
589,764 - BACOVA_05116 0.56 +1.8
589,770 + BACOVA_05116 0.56 +1.4
589,804 - BACOVA_05116 0.60 -2.5
589,963 + BACOVA_05116 0.78 -0.5
589,965 + BACOVA_05116 0.78 +1.5
589,965 + BACOVA_05116 0.78 +0.1
589,965 + BACOVA_05116 0.78 -1.6
589,966 - BACOVA_05116 0.78 -1.4
589,986 - BACOVA_05116 0.81 -1.6
589,995 - BACOVA_05116 0.82 -1.6
590,053 + BACOVA_05116 0.88 -0.8
590,091 + +0.5
590,170 + -0.9
590,170 + +0.2
590,180 + -1.1
590,180 + -0.3
590,181 - +0.2
590,181 - -0.1
590,189 + -1.2
590,224 - +0.7
590,303 + BACOVA_05117 0.19 +0.1
590,304 - BACOVA_05117 0.19 -1.0
590,313 - BACOVA_05117 0.21 +0.2
590,345 + BACOVA_05117 0.26 -1.5
590,345 + BACOVA_05117 0.26 -1.3
590,386 + BACOVA_05117 0.33 +0.1
590,433 + BACOVA_05117 0.40 -1.6
590,435 + BACOVA_05117 0.40 +0.4
590,441 - BACOVA_05117 0.41 -0.3
590,446 - BACOVA_05117 0.42 -0.1
590,459 + BACOVA_05117 0.44 -1.5
590,546 - BACOVA_05117 0.58 +0.5
590,582 + BACOVA_05117 0.64 +0.5
590,584 + BACOVA_05117 0.64 +0.9
590,584 + BACOVA_05117 0.64 -0.8
590,585 - BACOVA_05117 0.64 +0.7
590,607 + BACOVA_05117 0.68 -1.7
590,642 - BACOVA_05117 0.74 -1.3
590,660 + BACOVA_05117 0.76 -0.4
590,661 - BACOVA_05117 0.77 +0.5
590,686 - BACOVA_05117 0.81 +1.9
590,716 + BACOVA_05117 0.85 +0.7
590,716 + BACOVA_05117 0.85 +0.4
590,717 - BACOVA_05117 0.86 +1.1
590,723 - BACOVA_05117 0.87 +0.2
590,745 - -0.5
590,745 - -2.0
590,747 - -0.8
590,748 + +0.5
590,749 - -0.8
590,749 - +0.2
590,749 - -1.5
590,758 + -0.1
590,762 + +0.4
590,807 + +0.9
590,812 + +0.3
590,813 - +0.2
590,844 + -1.6
590,850 - -0.6
590,855 - -2.0
590,897 + -1.2
590,944 - BACOVA_05118 0.16 -0.4
590,949 + BACOVA_05118 0.17 -2.7
590,950 - BACOVA_05118 0.17 +0.1
590,955 - BACOVA_05118 0.17 +0.7
590,976 + BACOVA_05118 0.20 +0.5
590,978 + BACOVA_05118 0.21 +0.4
590,982 - BACOVA_05118 0.21 -0.8
591,006 - BACOVA_05118 0.25 -1.6
591,032 + BACOVA_05118 0.28 -2.2
591,032 + BACOVA_05118 0.28 -0.8
591,033 - BACOVA_05118 0.28 -2.2
591,081 + BACOVA_05118 0.35 -0.6
591,081 + BACOVA_05118 0.35 -0.1
591,128 + BACOVA_05118 0.42 -0.9
591,129 - BACOVA_05118 0.42 -0.5
591,131 + BACOVA_05118 0.42 -1.2
591,131 + BACOVA_05118 0.42 -0.8
591,142 + BACOVA_05118 0.44 +0.5
591,142 + BACOVA_05118 0.44 -1.2
591,153 + BACOVA_05118 0.45 -0.7

Or see this region's nucleotide sequence