Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04967 and BACOVA_04968 overlap by 20 nucleotides BACOVA_04968 and BACOVA_04969 are separated by 102 nucleotides BACOVA_04969 and BACOVA_04970 are separated by 130 nucleotides BACOVA_04970 and BACOVA_04971 are separated by 84 nucleotides BACOVA_04971 and BACOVA_04972 are separated by 72 nucleotides
BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457
_04967
BACOVA_04968: BACOVA_04968 - hypothetical protein, at 414,438 to 416,198
_04968
BACOVA_04969: BACOVA_04969 - hypothetical protein, at 416,301 to 416,405
_04969
BACOVA_04970: BACOVA_04970 - hypothetical protein, at 416,536 to 416,640
_04970
BACOVA_04971: BACOVA_04971 - hypothetical protein, at 416,725 to 416,838
_04971
BACOVA_04972: BACOVA_04972 - GDSL-like protein, at 416,911 to 418,545
_04972
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 413.501 kb on - strand, within BACOVA_04967 at 413.515 kb on + strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.516 kb on - strand, within BACOVA_04967 at 413.519 kb on - strand, within BACOVA_04967 at 413.532 kb on - strand, within BACOVA_04967 at 413.561 kb on - strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.581 kb on + strand, within BACOVA_04967 at 413.582 kb on - strand, within BACOVA_04967 at 413.594 kb on - strand, within BACOVA_04967 at 413.612 kb on + strand, within BACOVA_04967 at 413.617 kb on + strand, within BACOVA_04967 at 413.617 kb on + strand, within BACOVA_04967 at 413.650 kb on + strand, within BACOVA_04967 at 413.655 kb on + strand, within BACOVA_04967 at 413.656 kb on - strand, within BACOVA_04967 at 413.656 kb on - strand, within BACOVA_04967 at 413.678 kb on - strand, within BACOVA_04967 at 413.721 kb on - strand, within BACOVA_04967 at 413.721 kb on - strand, within BACOVA_04967 at 413.723 kb on + strand, within BACOVA_04967 at 413.724 kb on - strand, within BACOVA_04967 at 413.728 kb on + strand, within BACOVA_04967 at 413.728 kb on + strand, within BACOVA_04967 at 413.732 kb on - strand, within BACOVA_04967 at 413.754 kb on + strand, within BACOVA_04967 at 413.789 kb on + strand, within BACOVA_04967 at 413.790 kb on - strand, within BACOVA_04967 at 413.882 kb on + strand, within BACOVA_04967 at 413.882 kb on + strand, within BACOVA_04967 at 413.920 kb on + strand, within BACOVA_04967 at 413.921 kb on - strand, within BACOVA_04967 at 413.947 kb on - strand, within BACOVA_04967 at 414.006 kb on + strand, within BACOVA_04967 at 414.075 kb on + strand, within BACOVA_04967 at 414.076 kb on - strand, within BACOVA_04967 at 414.121 kb on + strand at 414.122 kb on - strand at 414.130 kb on + strand at 414.130 kb on + strand at 414.131 kb on - strand at 414.133 kb on - strand at 414.197 kb on - strand at 414.243 kb on - strand at 414.243 kb on - strand at 414.307 kb on + strand at 414.308 kb on - strand at 414.334 kb on + strand at 414.335 kb on - strand at 414.339 kb on + strand at 414.354 kb on + strand at 414.366 kb on + strand at 414.376 kb on + strand at 414.377 kb on - strand at 414.386 kb on - strand at 414.422 kb on - strand at 414.422 kb on - strand at 414.425 kb on + strand at 414.516 kb on + strand at 414.516 kb on + strand at 414.517 kb on - strand at 414.517 kb on - strand at 414.635 kb on + strand, within BACOVA_04968 at 414.658 kb on + strand, within BACOVA_04968 at 414.659 kb on - strand, within BACOVA_04968 at 414.659 kb on - strand, within BACOVA_04968 at 414.721 kb on + strand, within BACOVA_04968 at 414.721 kb on + strand, within BACOVA_04968 at 414.810 kb on + strand, within BACOVA_04968 at 414.950 kb on - strand, within BACOVA_04968 at 414.970 kb on + strand, within BACOVA_04968 at 414.971 kb on - strand, within BACOVA_04968 at 414.993 kb on - strand, within BACOVA_04968 at 414.997 kb on - strand, within BACOVA_04968 at 414.997 kb on - strand, within BACOVA_04968 at 415.052 kb on - strand, within BACOVA_04968 at 415.052 kb on - strand, within BACOVA_04968 at 415.055 kb on - strand, within BACOVA_04968 at 415.080 kb on - strand, within BACOVA_04968 at 415.109 kb on + strand, within BACOVA_04968 at 415.113 kb on + strand, within BACOVA_04968 at 415.113 kb on + strand, within BACOVA_04968 at 415.113 kb on + strand, within BACOVA_04968 at 415.114 kb on - strand, within BACOVA_04968 at 415.114 kb on - strand, within BACOVA_04968 at 415.120 kb on - strand, within BACOVA_04968 at 415.250 kb on + strand, within BACOVA_04968 at 415.287 kb on + strand, within BACOVA_04968 at 415.287 kb on + strand, within BACOVA_04968 at 415.288 kb on - strand, within BACOVA_04968 at 415.291 kb on + strand, within BACOVA_04968 at 415.294 kb on + strand, within BACOVA_04968 at 415.297 kb on - strand, within BACOVA_04968 at 415.297 kb on - strand, within BACOVA_04968 at 415.313 kb on + strand, within BACOVA_04968 at 415.364 kb on - strand, within BACOVA_04968 at 415.383 kb on - strand, within BACOVA_04968 at 415.478 kb on + strand, within BACOVA_04968 at 415.479 kb on - strand, within BACOVA_04968 at 415.500 kb on - strand, within BACOVA_04968 at 415.512 kb on - strand, within BACOVA_04968 at 415.514 kb on + strand, within BACOVA_04968 at 415.545 kb on - strand, within BACOVA_04968 at 415.601 kb on - strand, within BACOVA_04968 at 415.609 kb on + strand, within BACOVA_04968 at 415.610 kb on - strand, within BACOVA_04968 at 415.610 kb on - strand, within BACOVA_04968 at 415.665 kb on + strand, within BACOVA_04968 at 415.676 kb on + strand, within BACOVA_04968 at 415.677 kb on - strand, within BACOVA_04968 at 415.687 kb on + strand, within BACOVA_04968 at 415.734 kb on + strand, within BACOVA_04968 at 415.740 kb on + strand, within BACOVA_04968 at 415.742 kb on + strand, within BACOVA_04968 at 415.745 kb on - strand, within BACOVA_04968 at 415.779 kb on + strand, within BACOVA_04968 at 415.780 kb on - strand, within BACOVA_04968 at 415.805 kb on - strand, within BACOVA_04968 at 415.816 kb on + strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.817 kb on - strand, within BACOVA_04968 at 415.853 kb on - strand, within BACOVA_04968 at 415.866 kb on - strand, within BACOVA_04968 at 415.866 kb on - strand, within BACOVA_04968 at 415.937 kb on + strand, within BACOVA_04968 at 415.962 kb on + strand, within BACOVA_04968 at 415.962 kb on + strand, within BACOVA_04968 at 415.981 kb on + strand, within BACOVA_04968 at 416.004 kb on + strand, within BACOVA_04968 at 416.007 kb on + strand, within BACOVA_04968 at 416.008 kb on - strand, within BACOVA_04968 at 416.018 kb on - strand, within BACOVA_04968 at 416.041 kb on - strand at 416.080 kb on + strand at 416.080 kb on + strand at 416.110 kb on + strand at 416.110 kb on + strand at 416.111 kb on - strand at 416.220 kb on - strand at 416.269 kb on + strand at 416.270 kb on - strand at 416.273 kb on - strand at 416.318 kb on + strand, within BACOVA_04969 at 416.349 kb on - strand, within BACOVA_04969 at 416.351 kb on - strand, within BACOVA_04969 at 416.360 kb on + strand, within BACOVA_04969 at 416.404 kb on - strand at 416.404 kb on - strand at 416.457 kb on + strand at 416.489 kb on + strand at 416.490 kb on - strand at 416.528 kb on + strand at 416.529 kb on - strand at 416.573 kb on + strand, within BACOVA_04970 at 416.633 kb on - strand at 416.816 kb on + strand, within BACOVA_04971 at 416.866 kb on - strand at 416.866 kb on - strand at 416.921 kb on + strand at 416.922 kb on - strand at 416.958 kb on + strand at 416.958 kb on + strand at 417.007 kb on - strand at 417.019 kb on - strand at 417.186 kb on + strand, within BACOVA_04972 at 417.193 kb on + strand, within BACOVA_04972 at 417.193 kb on + strand, within BACOVA_04972
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 413,501 - BACOVA_04967 0.72 +1.3 413,515 + BACOVA_04967 0.72 -1.2 413,516 - BACOVA_04967 0.72 +0.1 413,516 - BACOVA_04967 0.72 +0.5 413,516 - BACOVA_04967 0.72 -0.5 413,516 - BACOVA_04967 0.72 +1.1 413,519 - BACOVA_04967 0.72 -0.9 413,532 - BACOVA_04967 0.73 +1.4 413,561 - BACOVA_04967 0.74 -0.7 413,581 + BACOVA_04967 0.74 -1.4 413,581 + BACOVA_04967 0.74 -1.3 413,581 + BACOVA_04967 0.74 +0.7 413,581 + BACOVA_04967 0.74 -2.6 413,582 - BACOVA_04967 0.74 -0.3 413,594 - BACOVA_04967 0.75 +0.5 413,612 + BACOVA_04967 0.75 -2.1 413,617 + BACOVA_04967 0.75 +0.6 413,617 + BACOVA_04967 0.75 -1.6 413,650 + BACOVA_04967 0.76 -1.9 413,655 + BACOVA_04967 0.76 +0.7 413,656 - BACOVA_04967 0.76 +0.7 413,656 - BACOVA_04967 0.76 -0.4 413,678 - BACOVA_04967 0.77 -0.9 413,721 - BACOVA_04967 0.78 -2.3 413,721 - BACOVA_04967 0.78 +0.7 413,723 + BACOVA_04967 0.78 +0.5 413,724 - BACOVA_04967 0.78 -2.9 413,728 + BACOVA_04967 0.79 -0.4 413,728 + BACOVA_04967 0.79 +0.7 413,732 - BACOVA_04967 0.79 -1.6 413,754 + BACOVA_04967 0.79 -1.1 413,789 + BACOVA_04967 0.80 -0.3 413,790 - BACOVA_04967 0.80 -0.0 413,882 + BACOVA_04967 0.83 -2.0 413,882 + BACOVA_04967 0.83 -0.8 413,920 + BACOVA_04967 0.84 +0.1 413,921 - BACOVA_04967 0.84 -0.7 413,947 - BACOVA_04967 0.85 +0.7 414,006 + BACOVA_04967 0.87 -3.1 414,075 + BACOVA_04967 0.89 -0.3 414,076 - BACOVA_04967 0.89 +0.5 414,121 + -1.5 414,122 - +0.9 414,130 + +1.7 414,130 + +0.6 414,131 - -1.4 414,133 - +0.5 414,197 - +0.2 414,243 - +0.4 414,243 - -0.6 414,307 + -0.2 414,308 - -0.8 414,334 + -0.6 414,335 - -2.3 414,339 + +0.5 414,354 + -0.6 414,366 + +0.7 414,376 + -0.6 414,377 - +2.9 414,386 - +0.6 414,422 - +0.2 414,422 - +0.3 414,425 + +0.1 414,516 + -0.3 414,516 + -0.7 414,517 - +0.8 414,517 - -0.7 414,635 + BACOVA_04968 0.11 +0.8 414,658 + BACOVA_04968 0.12 -0.0 414,659 - BACOVA_04968 0.13 -1.5 414,659 - BACOVA_04968 0.13 -1.0 414,721 + BACOVA_04968 0.16 -0.2 414,721 + BACOVA_04968 0.16 -0.9 414,810 + BACOVA_04968 0.21 -0.3 414,950 - BACOVA_04968 0.29 -0.9 414,970 + BACOVA_04968 0.30 -1.6 414,971 - BACOVA_04968 0.30 -0.9 414,993 - BACOVA_04968 0.32 -0.6 414,997 - BACOVA_04968 0.32 -1.3 414,997 - BACOVA_04968 0.32 -0.2 415,052 - BACOVA_04968 0.35 +0.2 415,052 - BACOVA_04968 0.35 -0.8 415,055 - BACOVA_04968 0.35 +0.4 415,080 - BACOVA_04968 0.36 -0.8 415,109 + BACOVA_04968 0.38 +0.1 415,113 + BACOVA_04968 0.38 -0.4 415,113 + BACOVA_04968 0.38 -0.7 415,113 + BACOVA_04968 0.38 +1.2 415,114 - BACOVA_04968 0.38 -0.5 415,114 - BACOVA_04968 0.38 +0.7 415,120 - BACOVA_04968 0.39 -0.2 415,250 + BACOVA_04968 0.46 +0.5 415,287 + BACOVA_04968 0.48 +1.4 415,287 + BACOVA_04968 0.48 +1.3 415,288 - BACOVA_04968 0.48 +0.5 415,291 + BACOVA_04968 0.48 -1.5 415,294 + BACOVA_04968 0.49 +0.9 415,297 - BACOVA_04968 0.49 +1.3 415,297 - BACOVA_04968 0.49 +0.9 415,313 + BACOVA_04968 0.50 -0.6 415,364 - BACOVA_04968 0.53 +0.6 415,383 - BACOVA_04968 0.54 +2.5 415,478 + BACOVA_04968 0.59 -0.3 415,479 - BACOVA_04968 0.59 -2.1 415,500 - BACOVA_04968 0.60 -1.1 415,512 - BACOVA_04968 0.61 -2.0 415,514 + BACOVA_04968 0.61 -0.6 415,545 - BACOVA_04968 0.63 -1.7 415,601 - BACOVA_04968 0.66 +1.0 415,609 + BACOVA_04968 0.66 -0.6 415,610 - BACOVA_04968 0.67 -1.0 415,610 - BACOVA_04968 0.67 -0.6 415,665 + BACOVA_04968 0.70 -0.6 415,676 + BACOVA_04968 0.70 +0.2 415,677 - BACOVA_04968 0.70 +0.3 415,687 + BACOVA_04968 0.71 -1.1 415,734 + BACOVA_04968 0.74 +1.5 415,740 + BACOVA_04968 0.74 +0.5 415,742 + BACOVA_04968 0.74 -0.4 415,745 - BACOVA_04968 0.74 +0.7 415,779 + BACOVA_04968 0.76 +0.3 415,780 - BACOVA_04968 0.76 +0.3 415,805 - BACOVA_04968 0.78 -1.5 415,816 + BACOVA_04968 0.78 +1.3 415,817 - BACOVA_04968 0.78 -0.1 415,817 - BACOVA_04968 0.78 -0.2 415,817 - BACOVA_04968 0.78 +0.7 415,853 - BACOVA_04968 0.80 +0.6 415,866 - BACOVA_04968 0.81 -0.0 415,866 - BACOVA_04968 0.81 +1.3 415,937 + BACOVA_04968 0.85 -0.5 415,962 + BACOVA_04968 0.87 -1.5 415,962 + BACOVA_04968 0.87 -0.8 415,981 + BACOVA_04968 0.88 -0.2 416,004 + BACOVA_04968 0.89 -0.0 416,007 + BACOVA_04968 0.89 +0.7 416,008 - BACOVA_04968 0.89 +0.3 416,018 - BACOVA_04968 0.90 -2.6 416,041 - -2.2 416,080 + -0.7 416,080 + +0.5 416,110 + +1.3 416,110 + +0.7 416,111 - -0.8 416,220 - +0.5 416,269 + -0.6 416,270 - +1.2 416,273 - +0.3 416,318 + BACOVA_04969 0.16 -1.0 416,349 - BACOVA_04969 0.46 -1.4 416,351 - BACOVA_04969 0.48 +1.1 416,360 + BACOVA_04969 0.56 +0.4 416,404 - -0.2 416,404 - -1.5 416,457 + -1.1 416,489 + -0.3 416,490 - -0.2 416,528 + -0.7 416,529 - -0.5 416,573 + BACOVA_04970 0.35 -1.1 416,633 - -1.1 416,816 + BACOVA_04971 0.80 -0.7 416,866 - +1.9 416,866 - +1.7 416,921 + +0.7 416,922 - -0.6 416,958 + +0.3 416,958 + +0.0 417,007 - -1.0 417,019 - +0.4 417,186 + BACOVA_04972 0.17 -0.7 417,193 + BACOVA_04972 0.17 -0.7 417,193 + BACOVA_04972 0.17 -0.3
Or see this region's nucleotide sequence