Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04929

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04927 and BACOVA_04928 are separated by 12 nucleotidesBACOVA_04928 and BACOVA_04929 are separated by 272 nucleotidesBACOVA_04929 and BACOVA_04930 are separated by 223 nucleotides BACOVA_04927: BACOVA_04927 - glycosyl hydrolase family 3 C-terminal domain protein, at 344,531 to 347,122 _04927 BACOVA_04928: BACOVA_04928 - hypothetical protein, at 347,135 to 347,251 _04928 BACOVA_04929: BACOVA_04929 - glycosyl hydrolase, family 43, at 347,524 to 349,467 _04929 BACOVA_04930: BACOVA_04930 - methyltransferase domain protein, at 349,691 to 350,458 _04930 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.697 kb on - strand, within BACOVA_04927at 346.738 kb on + strand, within BACOVA_04927at 346.738 kb on + strand, within BACOVA_04927at 346.738 kb on + strand, within BACOVA_04927at 346.740 kb on + strand, within BACOVA_04927at 346.740 kb on + strand, within BACOVA_04927at 346.740 kb on + strand, within BACOVA_04927at 346.809 kb on + strand, within BACOVA_04927at 346.840 kb on + strand, within BACOVA_04927at 346.840 kb on + strand, within BACOVA_04927at 346.841 kb on - strand, within BACOVA_04927at 346.844 kb on + strand, within BACOVA_04927at 346.844 kb on + strand, within BACOVA_04927at 346.914 kb on + strandat 346.914 kb on + strandat 346.915 kb on - strandat 346.939 kb on + strandat 346.980 kb on - strandat 346.998 kb on - strandat 347.069 kb on + strandat 347.069 kb on + strandat 347.070 kb on - strandat 347.093 kb on - strandat 347.127 kb on + strandat 347.128 kb on - strandat 347.143 kb on + strandat 347.160 kb on + strand, within BACOVA_04928at 347.160 kb on + strand, within BACOVA_04928at 347.160 kb on + strand, within BACOVA_04928at 347.161 kb on - strand, within BACOVA_04928at 347.242 kb on - strandat 347.250 kb on - strandat 347.271 kb on + strandat 347.284 kb on - strandat 347.309 kb on - strandat 347.341 kb on - strandat 347.344 kb on + strandat 347.344 kb on + strandat 347.344 kb on + strandat 347.344 kb on + strandat 347.345 kb on - strandat 347.371 kb on - strandat 347.400 kb on - strandat 347.403 kb on - strandat 347.414 kb on - strandat 347.418 kb on - strandat 347.446 kb on + strandat 347.467 kb on + strandat 347.467 kb on + strandat 347.468 kb on - strandat 347.487 kb on + strandat 347.496 kb on - strandat 347.496 kb on - strandat 347.523 kb on - strandat 347.560 kb on + strandat 347.560 kb on + strandat 347.561 kb on - strandat 347.561 kb on - strandat 347.561 kb on - strandat 347.596 kb on + strandat 347.648 kb on + strandat 347.659 kb on + strandat 347.662 kb on + strandat 347.662 kb on + strandat 347.671 kb on - strandat 347.753 kb on - strand, within BACOVA_04929at 347.761 kb on - strand, within BACOVA_04929at 347.806 kb on + strand, within BACOVA_04929at 347.808 kb on + strand, within BACOVA_04929at 347.808 kb on + strand, within BACOVA_04929at 347.854 kb on + strand, within BACOVA_04929at 347.854 kb on + strand, within BACOVA_04929at 347.854 kb on + strand, within BACOVA_04929at 347.860 kb on - strand, within BACOVA_04929at 347.861 kb on + strand, within BACOVA_04929at 347.862 kb on - strand, within BACOVA_04929at 347.872 kb on - strand, within BACOVA_04929at 347.898 kb on + strand, within BACOVA_04929at 347.898 kb on + strand, within BACOVA_04929at 347.923 kb on + strand, within BACOVA_04929at 347.924 kb on - strand, within BACOVA_04929at 347.925 kb on + strand, within BACOVA_04929at 347.926 kb on - strand, within BACOVA_04929at 347.926 kb on - strand, within BACOVA_04929at 347.934 kb on + strand, within BACOVA_04929at 347.934 kb on + strand, within BACOVA_04929at 347.970 kb on + strand, within BACOVA_04929at 347.992 kb on + strand, within BACOVA_04929at 348.045 kb on + strand, within BACOVA_04929at 348.046 kb on - strand, within BACOVA_04929at 348.070 kb on - strand, within BACOVA_04929at 348.084 kb on + strand, within BACOVA_04929at 348.087 kb on - strand, within BACOVA_04929at 348.134 kb on - strand, within BACOVA_04929at 348.152 kb on - strand, within BACOVA_04929at 348.154 kb on + strand, within BACOVA_04929at 348.155 kb on - strand, within BACOVA_04929at 348.155 kb on - strand, within BACOVA_04929at 348.197 kb on + strand, within BACOVA_04929at 348.226 kb on + strand, within BACOVA_04929at 348.295 kb on - strand, within BACOVA_04929at 348.296 kb on + strand, within BACOVA_04929at 348.296 kb on + strand, within BACOVA_04929at 348.297 kb on - strand, within BACOVA_04929at 348.297 kb on - strand, within BACOVA_04929at 348.347 kb on - strand, within BACOVA_04929at 348.347 kb on - strand, within BACOVA_04929at 348.347 kb on - strand, within BACOVA_04929at 348.363 kb on + strand, within BACOVA_04929at 348.364 kb on - strand, within BACOVA_04929at 348.364 kb on - strand, within BACOVA_04929at 348.369 kb on - strand, within BACOVA_04929at 348.369 kb on - strand, within BACOVA_04929at 348.369 kb on - strand, within BACOVA_04929at 348.375 kb on + strand, within BACOVA_04929at 348.438 kb on + strand, within BACOVA_04929at 348.439 kb on - strand, within BACOVA_04929at 348.439 kb on - strand, within BACOVA_04929at 348.439 kb on - strand, within BACOVA_04929at 348.439 kb on - strand, within BACOVA_04929at 348.471 kb on + strand, within BACOVA_04929at 348.471 kb on + strand, within BACOVA_04929at 348.471 kb on + strand, within BACOVA_04929at 348.472 kb on - strand, within BACOVA_04929at 348.538 kb on - strand, within BACOVA_04929at 348.550 kb on + strand, within BACOVA_04929at 348.553 kb on - strand, within BACOVA_04929at 348.591 kb on + strand, within BACOVA_04929at 348.664 kb on + strand, within BACOVA_04929at 348.665 kb on - strand, within BACOVA_04929at 348.665 kb on - strand, within BACOVA_04929at 348.666 kb on + strand, within BACOVA_04929at 348.680 kb on + strand, within BACOVA_04929at 348.680 kb on + strand, within BACOVA_04929at 348.683 kb on + strand, within BACOVA_04929at 348.683 kb on + strand, within BACOVA_04929at 348.687 kb on - strand, within BACOVA_04929at 348.701 kb on + strand, within BACOVA_04929at 348.732 kb on + strand, within BACOVA_04929at 348.749 kb on - strand, within BACOVA_04929at 348.749 kb on - strand, within BACOVA_04929at 348.834 kb on + strand, within BACOVA_04929at 348.834 kb on + strand, within BACOVA_04929at 348.866 kb on - strand, within BACOVA_04929at 348.897 kb on + strand, within BACOVA_04929at 348.911 kb on - strand, within BACOVA_04929at 348.912 kb on + strand, within BACOVA_04929at 348.961 kb on - strand, within BACOVA_04929at 348.984 kb on - strand, within BACOVA_04929at 349.003 kb on + strand, within BACOVA_04929at 349.003 kb on + strand, within BACOVA_04929at 349.006 kb on - strand, within BACOVA_04929at 349.010 kb on + strand, within BACOVA_04929at 349.011 kb on - strand, within BACOVA_04929at 349.084 kb on + strand, within BACOVA_04929at 349.085 kb on - strand, within BACOVA_04929at 349.085 kb on - strand, within BACOVA_04929at 349.085 kb on - strand, within BACOVA_04929at 349.096 kb on - strand, within BACOVA_04929at 349.185 kb on + strand, within BACOVA_04929at 349.187 kb on + strand, within BACOVA_04929at 349.188 kb on - strand, within BACOVA_04929at 349.215 kb on + strand, within BACOVA_04929at 349.228 kb on - strand, within BACOVA_04929at 349.307 kb on + strandat 349.307 kb on + strandat 349.409 kb on - strandat 349.431 kb on + strandat 349.431 kb on + strandat 349.439 kb on + strandat 349.439 kb on + strandat 349.439 kb on + strandat 349.440 kb on - strandat 349.440 kb on - strandat 349.443 kb on + strandat 349.443 kb on + strandat 349.485 kb on + strandat 349.486 kb on - strandat 349.486 kb on - strandat 349.487 kb on + strandat 349.518 kb on - strandat 349.545 kb on - strandat 349.553 kb on + strandat 349.555 kb on + strandat 349.556 kb on - strandat 349.559 kb on + strandat 349.560 kb on - strandat 349.566 kb on + strandat 349.589 kb on - strandat 349.602 kb on + strandat 349.605 kb on - strandat 349.609 kb on + strandat 349.609 kb on + strandat 349.638 kb on + strandat 349.659 kb on + strandat 349.669 kb on + strandat 349.670 kb on - strandat 349.676 kb on + strandat 349.697 kb on - strandat 349.706 kb on - strandat 349.724 kb on + strandat 349.778 kb on + strand, within BACOVA_04930at 349.846 kb on + strand, within BACOVA_04930at 349.846 kb on + strand, within BACOVA_04930at 349.846 kb on + strand, within BACOVA_04930at 349.847 kb on - strand, within BACOVA_04930at 349.872 kb on - strand, within BACOVA_04930at 349.876 kb on + strand, within BACOVA_04930at 349.876 kb on + strand, within BACOVA_04930at 349.877 kb on - strand, within BACOVA_04930at 349.877 kb on - strand, within BACOVA_04930at 349.878 kb on + strand, within BACOVA_04930at 349.879 kb on - strand, within BACOVA_04930at 349.879 kb on - strand, within BACOVA_04930at 349.879 kb on - strand, within BACOVA_04930at 349.892 kb on + strand, within BACOVA_04930at 349.893 kb on - strand, within BACOVA_04930at 349.893 kb on - strand, within BACOVA_04930at 349.987 kb on - strand, within BACOVA_04930at 350.039 kb on + strand, within BACOVA_04930at 350.104 kb on - strand, within BACOVA_04930at 350.142 kb on + strand, within BACOVA_04930at 350.143 kb on - strand, within BACOVA_04930at 350.180 kb on + strand, within BACOVA_04930at 350.180 kb on + strand, within BACOVA_04930at 350.181 kb on - strand, within BACOVA_04930at 350.181 kb on - strand, within BACOVA_04930at 350.181 kb on - strand, within BACOVA_04930at 350.182 kb on + strand, within BACOVA_04930at 350.183 kb on - strand, within BACOVA_04930at 350.183 kb on - strand, within BACOVA_04930at 350.183 kb on - strand, within BACOVA_04930at 350.236 kb on + strand, within BACOVA_04930at 350.237 kb on - strand, within BACOVA_04930at 350.268 kb on - strand, within BACOVA_04930at 350.272 kb on + strand, within BACOVA_04930at 350.294 kb on - strand, within BACOVA_04930at 350.342 kb on + strand, within BACOVA_04930at 350.363 kb on - strand, within BACOVA_04930at 350.363 kb on - strand, within BACOVA_04930at 350.404 kb on + strandat 350.404 kb on + strandat 350.405 kb on - strandat 350.443 kb on + strandat 350.443 kb on + strandat 350.453 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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346,697 - BACOVA_04927 0.84 +1.1
346,738 + BACOVA_04927 0.85 +0.3
346,738 + BACOVA_04927 0.85 -2.1
346,738 + BACOVA_04927 0.85 +0.4
346,740 + BACOVA_04927 0.85 -0.8
346,740 + BACOVA_04927 0.85 +0.2
346,740 + BACOVA_04927 0.85 +0.8
346,809 + BACOVA_04927 0.88 -0.3
346,840 + BACOVA_04927 0.89 -2.3
346,840 + BACOVA_04927 0.89 -1.4
346,841 - BACOVA_04927 0.89 -0.3
346,844 + BACOVA_04927 0.89 +0.9
346,844 + BACOVA_04927 0.89 -0.0
346,914 + -0.2
346,914 + -1.8
346,915 - +1.5
346,939 + +0.7
346,980 - -0.7
346,998 - -0.3
347,069 + -0.5
347,069 + -1.6
347,070 - -2.1
347,093 - -0.4
347,127 + -0.4
347,128 - -0.1
347,143 + -0.4
347,160 + BACOVA_04928 0.21 -1.6
347,160 + BACOVA_04928 0.21 -1.7
347,160 + BACOVA_04928 0.21 -1.2
347,161 - BACOVA_04928 0.22 -0.8
347,242 - -0.2
347,250 - +0.2
347,271 + -0.7
347,284 - -0.1
347,309 - +1.2
347,341 - -0.7
347,344 + -0.5
347,344 + -0.4
347,344 + +0.8
347,344 + -1.4
347,345 - -0.2
347,371 - +0.5
347,400 - +1.0
347,403 - -0.4
347,414 - +1.2
347,418 - -1.1
347,446 + -0.4
347,467 + +0.9
347,467 + -0.8
347,468 - -2.0
347,487 + -0.7
347,496 - -1.4
347,496 - -0.9
347,523 - +0.7
347,560 + -0.5
347,560 + -1.1
347,561 - -0.4
347,561 - +0.0
347,561 - +0.8
347,596 + +0.4
347,648 + +0.1
347,659 + -1.9
347,662 + -1.6
347,662 + -0.2
347,671 - +2.2
347,753 - BACOVA_04929 0.12 -1.7
347,761 - BACOVA_04929 0.12 +1.7
347,806 + BACOVA_04929 0.15 -1.6
347,808 + BACOVA_04929 0.15 +1.2
347,808 + BACOVA_04929 0.15 +0.2
347,854 + BACOVA_04929 0.17 +0.2
347,854 + BACOVA_04929 0.17 -0.3
347,854 + BACOVA_04929 0.17 -1.6
347,860 - BACOVA_04929 0.17 +0.3
347,861 + BACOVA_04929 0.17 +1.5
347,862 - BACOVA_04929 0.17 +1.8
347,872 - BACOVA_04929 0.18 -1.0
347,898 + BACOVA_04929 0.19 +0.7
347,898 + BACOVA_04929 0.19 +0.1
347,923 + BACOVA_04929 0.21 -0.5
347,924 - BACOVA_04929 0.21 -1.4
347,925 + BACOVA_04929 0.21 -0.6
347,926 - BACOVA_04929 0.21 -0.3
347,926 - BACOVA_04929 0.21 +1.3
347,934 + BACOVA_04929 0.21 +0.5
347,934 + BACOVA_04929 0.21 +0.3
347,970 + BACOVA_04929 0.23 +0.2
347,992 + BACOVA_04929 0.24 -0.5
348,045 + BACOVA_04929 0.27 -0.1
348,046 - BACOVA_04929 0.27 -0.4
348,070 - BACOVA_04929 0.28 -1.3
348,084 + BACOVA_04929 0.29 -0.5
348,087 - BACOVA_04929 0.29 -1.5
348,134 - BACOVA_04929 0.31 +0.6
348,152 - BACOVA_04929 0.32 +1.0
348,154 + BACOVA_04929 0.32 +0.0
348,155 - BACOVA_04929 0.32 +1.0
348,155 - BACOVA_04929 0.32 -0.5
348,197 + BACOVA_04929 0.35 -0.3
348,226 + BACOVA_04929 0.36 +0.3
348,295 - BACOVA_04929 0.40 -1.3
348,296 + BACOVA_04929 0.40 +0.9
348,296 + BACOVA_04929 0.40 -0.2
348,297 - BACOVA_04929 0.40 -0.9
348,297 - BACOVA_04929 0.40 -2.1
348,347 - BACOVA_04929 0.42 -0.5
348,347 - BACOVA_04929 0.42 +1.5
348,347 - BACOVA_04929 0.42 +1.4
348,363 + BACOVA_04929 0.43 -2.1
348,364 - BACOVA_04929 0.43 -1.6
348,364 - BACOVA_04929 0.43 +0.5
348,369 - BACOVA_04929 0.43 -1.3
348,369 - BACOVA_04929 0.43 -0.5
348,369 - BACOVA_04929 0.43 -1.4
348,375 + BACOVA_04929 0.44 -2.2
348,438 + BACOVA_04929 0.47 -0.2
348,439 - BACOVA_04929 0.47 +0.5
348,439 - BACOVA_04929 0.47 +0.7
348,439 - BACOVA_04929 0.47 +0.4
348,439 - BACOVA_04929 0.47 -0.2
348,471 + BACOVA_04929 0.49 +1.7
348,471 + BACOVA_04929 0.49 +0.1
348,471 + BACOVA_04929 0.49 -1.0
348,472 - BACOVA_04929 0.49 -1.9
348,538 - BACOVA_04929 0.52 -0.1
348,550 + BACOVA_04929 0.53 -0.9
348,553 - BACOVA_04929 0.53 +0.0
348,591 + BACOVA_04929 0.55 +1.2
348,664 + BACOVA_04929 0.59 -0.9
348,665 - BACOVA_04929 0.59 -1.0
348,665 - BACOVA_04929 0.59 -1.6
348,666 + BACOVA_04929 0.59 -0.4
348,680 + BACOVA_04929 0.59 -1.4
348,680 + BACOVA_04929 0.59 +0.7
348,683 + BACOVA_04929 0.60 -2.5
348,683 + BACOVA_04929 0.60 +0.7
348,687 - BACOVA_04929 0.60 +0.7
348,701 + BACOVA_04929 0.61 -0.8
348,732 + BACOVA_04929 0.62 -0.3
348,749 - BACOVA_04929 0.63 +0.7
348,749 - BACOVA_04929 0.63 +0.0
348,834 + BACOVA_04929 0.67 -1.0
348,834 + BACOVA_04929 0.67 -1.1
348,866 - BACOVA_04929 0.69 -1.1
348,897 + BACOVA_04929 0.71 -2.0
348,911 - BACOVA_04929 0.71 +0.2
348,912 + BACOVA_04929 0.71 -0.2
348,961 - BACOVA_04929 0.74 -0.2
348,984 - BACOVA_04929 0.75 -0.4
349,003 + BACOVA_04929 0.76 +0.8
349,003 + BACOVA_04929 0.76 +1.0
349,006 - BACOVA_04929 0.76 +0.6
349,010 + BACOVA_04929 0.76 +1.0
349,011 - BACOVA_04929 0.76 -1.9
349,084 + BACOVA_04929 0.80 -0.5
349,085 - BACOVA_04929 0.80 +0.4
349,085 - BACOVA_04929 0.80 +0.5
349,085 - BACOVA_04929 0.80 -0.7
349,096 - BACOVA_04929 0.81 -0.2
349,185 + BACOVA_04929 0.85 -1.7
349,187 + BACOVA_04929 0.86 -2.6
349,188 - BACOVA_04929 0.86 +1.5
349,215 + BACOVA_04929 0.87 -0.4
349,228 - BACOVA_04929 0.88 -0.1
349,307 + -2.9
349,307 + -0.3
349,409 - -1.6
349,431 + -1.4
349,431 + +0.2
349,439 + -0.4
349,439 + +0.2
349,439 + +1.1
349,440 - -0.0
349,440 - -0.6
349,443 + +0.4
349,443 + +2.7
349,485 + -0.1
349,486 - -0.6
349,486 - -0.2
349,487 + +0.9
349,518 - +1.2
349,545 - +0.9
349,553 + +0.7
349,555 + -0.4
349,556 - +0.5
349,559 + -0.8
349,560 - -2.1
349,566 + +0.9
349,589 - -0.8
349,602 + -0.2
349,605 - -0.6
349,609 + -2.0
349,609 + -1.2
349,638 + +1.5
349,659 + +2.1
349,669 + -0.7
349,670 - +0.5
349,676 + -0.6
349,697 - +1.8
349,706 - -1.1
349,724 + -1.6
349,778 + BACOVA_04930 0.11 +0.2
349,846 + BACOVA_04930 0.20 -1.0
349,846 + BACOVA_04930 0.20 -0.1
349,846 + BACOVA_04930 0.20 -0.8
349,847 - BACOVA_04930 0.20 -0.3
349,872 - BACOVA_04930 0.24 -0.5
349,876 + BACOVA_04930 0.24 +0.7
349,876 + BACOVA_04930 0.24 -2.0
349,877 - BACOVA_04930 0.24 +0.4
349,877 - BACOVA_04930 0.24 +1.3
349,878 + BACOVA_04930 0.24 -0.8
349,879 - BACOVA_04930 0.24 -0.1
349,879 - BACOVA_04930 0.24 -1.1
349,879 - BACOVA_04930 0.24 -1.0
349,892 + BACOVA_04930 0.26 -0.5
349,893 - BACOVA_04930 0.26 -2.1
349,893 - BACOVA_04930 0.26 -0.7
349,987 - BACOVA_04930 0.39 -0.3
350,039 + BACOVA_04930 0.45 -0.9
350,104 - BACOVA_04930 0.54 +0.5
350,142 + BACOVA_04930 0.59 +1.5
350,143 - BACOVA_04930 0.59 -1.8
350,180 + BACOVA_04930 0.64 +1.9
350,180 + BACOVA_04930 0.64 -0.3
350,181 - BACOVA_04930 0.64 -0.5
350,181 - BACOVA_04930 0.64 -1.1
350,181 - BACOVA_04930 0.64 +0.2
350,182 + BACOVA_04930 0.64 +1.3
350,183 - BACOVA_04930 0.64 -1.7
350,183 - BACOVA_04930 0.64 -0.4
350,183 - BACOVA_04930 0.64 -0.4
350,236 + BACOVA_04930 0.71 -1.8
350,237 - BACOVA_04930 0.71 +0.6
350,268 - BACOVA_04930 0.75 -0.1
350,272 + BACOVA_04930 0.76 -1.6
350,294 - BACOVA_04930 0.79 -1.4
350,342 + BACOVA_04930 0.85 +0.7
350,363 - BACOVA_04930 0.88 -0.8
350,363 - BACOVA_04930 0.88 -0.6
350,404 + +1.2
350,404 + -1.5
350,405 - -2.0
350,443 + -1.3
350,443 + -1.0
350,453 + +0.3

Or see this region's nucleotide sequence