Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04676

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04674 and BACOVA_04675 are separated by 139 nucleotidesBACOVA_04675 and BACOVA_04676 are separated by 103 nucleotidesBACOVA_04676 and BACOVA_04677 are separated by 42 nucleotidesBACOVA_04677 and BACOVA_04678 are separated by 71 nucleotidesBACOVA_04678 and BACOVA_04679 are separated by 18 nucleotidesBACOVA_04679 and BACOVA_04680 are separated by 11 nucleotides BACOVA_04674: BACOVA_04674 - type III restriction enzyme, res subunit, at 52,630 to 53,901 _04674 BACOVA_04675: BACOVA_04675 - hypothetical protein, at 54,041 to 54,160 _04675 BACOVA_04676: BACOVA_04676 - hypothetical protein, at 54,264 to 54,374 _04676 BACOVA_04677: BACOVA_04677 - hypothetical protein, at 54,417 to 54,545 _04677 BACOVA_04678: BACOVA_04678 - hypothetical protein, at 54,617 to 54,910 _04678 BACOVA_04679: BACOVA_04679 - hypothetical protein, at 54,929 to 55,105 _04679 BACOVA_04680: BACOVA_04680 - hypothetical protein, at 55,117 to 55,443 _04680 Position (kb) 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 53.279 kb on + strand, within BACOVA_04674at 53.279 kb on + strand, within BACOVA_04674at 53.280 kb on - strand, within BACOVA_04674at 53.280 kb on - strand, within BACOVA_04674at 53.617 kb on + strand, within BACOVA_04674at 53.618 kb on - strand, within BACOVA_04674at 53.630 kb on - strand, within BACOVA_04674at 53.703 kb on - strand, within BACOVA_04674at 53.719 kb on + strand, within BACOVA_04674at 53.719 kb on + strand, within BACOVA_04674at 53.719 kb on + strand, within BACOVA_04674at 53.719 kb on + strand, within BACOVA_04674at 53.720 kb on - strand, within BACOVA_04674at 53.721 kb on + strand, within BACOVA_04674at 53.721 kb on + strand, within BACOVA_04674at 53.722 kb on - strand, within BACOVA_04674at 53.725 kb on + strand, within BACOVA_04674at 53.900 kb on - strandat 53.974 kb on + strandat 54.056 kb on + strand, within BACOVA_04675at 54.145 kb on + strand, within BACOVA_04675at 54.146 kb on - strand, within BACOVA_04675at 54.161 kb on + strandat 54.162 kb on - strandat 54.163 kb on + strandat 54.164 kb on - strandat 54.171 kb on + strandat 54.172 kb on - strandat 54.174 kb on - strandat 54.177 kb on + strandat 54.188 kb on - strandat 54.188 kb on - strandat 54.192 kb on + strandat 54.197 kb on + strandat 54.197 kb on + strandat 54.198 kb on - strandat 54.199 kb on + strandat 54.200 kb on - strandat 54.201 kb on + strandat 54.201 kb on + strandat 54.201 kb on + strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.202 kb on - strandat 54.203 kb on + strandat 54.208 kb on + strandat 54.209 kb on - strandat 54.209 kb on - strandat 54.209 kb on - strandat 54.212 kb on - strandat 54.217 kb on - strandat 54.221 kb on + strandat 54.248 kb on - strandat 54.253 kb on + strandat 54.256 kb on - strandat 54.256 kb on - strandat 54.290 kb on - strand, within BACOVA_04676at 54.319 kb on - strand, within BACOVA_04676at 54.338 kb on + strand, within BACOVA_04676at 54.412 kb on - strandat 54.494 kb on - strand, within BACOVA_04677at 54.525 kb on + strand, within BACOVA_04677at 54.526 kb on - strand, within BACOVA_04677at 54.526 kb on - strand, within BACOVA_04677at 54.569 kb on - strandat 54.580 kb on + strandat 54.603 kb on + strandat 54.610 kb on + strandat 54.721 kb on + strand, within BACOVA_04678at 54.721 kb on + strand, within BACOVA_04678at 54.795 kb on + strand, within BACOVA_04678at 54.842 kb on + strand, within BACOVA_04678at 54.860 kb on + strand, within BACOVA_04678at 54.929 kb on - strandat 54.929 kb on - strandat 54.933 kb on - strandat 54.982 kb on + strand, within BACOVA_04679at 55.044 kb on + strand, within BACOVA_04679at 55.044 kb on - strand, within BACOVA_04679at 55.045 kb on - strand, within BACOVA_04679at 55.051 kb on + strand, within BACOVA_04679at 55.052 kb on - strand, within BACOVA_04679at 55.127 kb on + strandat 55.127 kb on + strandat 55.128 kb on - strandat 55.154 kb on + strand, within BACOVA_04680at 55.362 kb on + strand, within BACOVA_04680at 55.362 kb on + strand, within BACOVA_04680at 55.362 kb on + strand, within BACOVA_04680at 55.372 kb on + strand, within BACOVA_04680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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53,279 + BACOVA_04674 0.51 -1.5
53,279 + BACOVA_04674 0.51 +0.0
53,280 - BACOVA_04674 0.51 -0.4
53,280 - BACOVA_04674 0.51 +0.5
53,617 + BACOVA_04674 0.78 -1.5
53,618 - BACOVA_04674 0.78 +0.4
53,630 - BACOVA_04674 0.79 +1.7
53,703 - BACOVA_04674 0.84 -2.1
53,719 + BACOVA_04674 0.86 -1.2
53,719 + BACOVA_04674 0.86 -2.3
53,719 + BACOVA_04674 0.86 +1.0
53,719 + BACOVA_04674 0.86 -0.2
53,720 - BACOVA_04674 0.86 -0.6
53,721 + BACOVA_04674 0.86 +0.1
53,721 + BACOVA_04674 0.86 -1.8
53,722 - BACOVA_04674 0.86 +0.2
53,725 + BACOVA_04674 0.86 -0.5
53,900 - -1.4
53,974 + +1.3
54,056 + BACOVA_04675 0.12 +0.7
54,145 + BACOVA_04675 0.87 -0.3
54,146 - BACOVA_04675 0.88 -0.3
54,161 + -0.3
54,162 - -0.3
54,163 + -1.2
54,164 - -0.6
54,171 + +0.3
54,172 - -1.2
54,174 - -0.0
54,177 + -2.1
54,188 - -1.1
54,188 - -1.4
54,192 + +0.7
54,197 + -0.8
54,197 + -0.1
54,198 - +0.8
54,199 + +0.5
54,200 - -1.3
54,201 + -1.5
54,201 + -1.2
54,201 + +0.1
54,202 - -0.9
54,202 - -0.8
54,202 - -0.3
54,202 - +0.1
54,202 - -0.1
54,203 + +0.4
54,208 + -0.8
54,209 - -1.0
54,209 - +1.7
54,209 - -0.9
54,212 - -0.2
54,217 - +0.1
54,221 + -1.5
54,248 - -0.4
54,253 + +1.5
54,256 - -0.6
54,256 - +1.9
54,290 - BACOVA_04676 0.23 -0.9
54,319 - BACOVA_04676 0.50 +0.5
54,338 + BACOVA_04676 0.67 -0.6
54,412 - +0.2
54,494 - BACOVA_04677 0.60 +1.2
54,525 + BACOVA_04677 0.84 +1.2
54,526 - BACOVA_04677 0.84 -0.4
54,526 - BACOVA_04677 0.84 -0.3
54,569 - +1.5
54,580 + +0.2
54,603 + +1.2
54,610 + +0.9
54,721 + BACOVA_04678 0.35 -1.9
54,721 + BACOVA_04678 0.35 -0.8
54,795 + BACOVA_04678 0.61 +0.7
54,842 + BACOVA_04678 0.77 +0.7
54,860 + BACOVA_04678 0.83 -0.4
54,929 - -0.4
54,929 - -1.4
54,933 - -0.7
54,982 + BACOVA_04679 0.30 -0.8
55,044 + BACOVA_04679 0.65 -0.3
55,044 - BACOVA_04679 0.65 +0.8
55,045 - BACOVA_04679 0.66 +0.7
55,051 + BACOVA_04679 0.69 +0.0
55,052 - BACOVA_04679 0.69 -0.6
55,127 + +0.1
55,127 + -1.6
55,128 - -0.3
55,154 + BACOVA_04680 0.11 -1.0
55,362 + BACOVA_04680 0.75 -1.4
55,362 + BACOVA_04680 0.75 +0.0
55,362 + BACOVA_04680 0.75 -0.5
55,372 + BACOVA_04680 0.78 +0.7

Or see this region's nucleotide sequence