Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04618 and BACOVA_04619 are separated by 57 nucleotides BACOVA_04619 and BACOVA_04620 are separated by 415 nucleotides BACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides BACOVA_04621 and BACOVA_04622 are separated by 23 nucleotides BACOVA_04622 and BACOVA_04623 are separated by 37 nucleotides
BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723
_04618
BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855
_04619
BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423
_04620
BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780
_04621
BACOVA_04622: BACOVA_04622 - DNA binding domain, excisionase family, at 18,804 to 19,604
_04622
BACOVA_04623: BACOVA_04623 - hypothetical protein, at 19,642 to 20,670
_04623
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 16.563 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.612 kb on - strand at 16.613 kb on + strand at 16.614 kb on - strand at 16.614 kb on - strand at 16.616 kb on + strand at 16.617 kb on - strand at 16.654 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.661 kb on - strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.687 kb on - strand at 16.687 kb on - strand at 16.696 kb on + strand at 16.697 kb on - strand at 16.702 kb on + strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.919 kb on + strand at 16.933 kb on + strand at 16.933 kb on + strand at 17.020 kb on + strand at 17.021 kb on - strand at 17.024 kb on + strand at 17.082 kb on + strand at 17.153 kb on - strand at 17.162 kb on - strand at 17.162 kb on - strand at 17.164 kb on - strand at 17.334 kb on - strand, within BACOVA_04620 at 17.479 kb on - strand at 17.530 kb on - strand at 17.535 kb on + strand at 17.597 kb on + strand at 17.597 kb on + strand at 17.598 kb on - strand at 17.603 kb on + strand at 17.622 kb on + strand at 17.623 kb on - strand at 17.632 kb on + strand at 17.670 kb on + strand, within BACOVA_04621 at 17.680 kb on - strand, within BACOVA_04621 at 17.692 kb on - strand, within BACOVA_04621 at 17.701 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.728 kb on + strand, within BACOVA_04621 at 17.729 kb on - strand, within BACOVA_04621 at 17.730 kb on + strand, within BACOVA_04621 at 17.730 kb on + strand, within BACOVA_04621 at 17.750 kb on - strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.766 kb on + strand, within BACOVA_04621 at 17.774 kb on + strand, within BACOVA_04621 at 17.798 kb on + strand, within BACOVA_04621 at 17.860 kb on + strand, within BACOVA_04621 at 17.861 kb on - strand, within BACOVA_04621 at 17.866 kb on + strand, within BACOVA_04621 at 17.871 kb on + strand, within BACOVA_04621 at 17.899 kb on - strand, within BACOVA_04621 at 17.939 kb on + strand, within BACOVA_04621 at 17.943 kb on + strand, within BACOVA_04621 at 17.943 kb on + strand, within BACOVA_04621 at 17.944 kb on - strand, within BACOVA_04621 at 17.944 kb on - strand, within BACOVA_04621 at 17.999 kb on + strand, within BACOVA_04621 at 18.000 kb on - strand, within BACOVA_04621 at 18.004 kb on + strand, within BACOVA_04621 at 18.005 kb on - strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.060 kb on + strand, within BACOVA_04621 at 18.061 kb on - strand, within BACOVA_04621 at 18.064 kb on + strand, within BACOVA_04621 at 18.072 kb on + strand, within BACOVA_04621 at 18.126 kb on + strand, within BACOVA_04621 at 18.161 kb on + strand, within BACOVA_04621 at 18.194 kb on - strand, within BACOVA_04621 at 18.197 kb on + strand, within BACOVA_04621 at 18.222 kb on - strand, within BACOVA_04621 at 18.276 kb on - strand, within BACOVA_04621 at 18.313 kb on - strand, within BACOVA_04621 at 18.337 kb on - strand, within BACOVA_04621 at 18.371 kb on - strand, within BACOVA_04621 at 18.416 kb on + strand, within BACOVA_04621 at 18.417 kb on - strand, within BACOVA_04621 at 18.417 kb on - strand, within BACOVA_04621 at 18.445 kb on - strand, within BACOVA_04621 at 18.446 kb on + strand, within BACOVA_04621 at 18.446 kb on + strand, within BACOVA_04621 at 18.447 kb on - strand, within BACOVA_04621 at 18.468 kb on + strand, within BACOVA_04621 at 18.469 kb on - strand, within BACOVA_04621 at 18.477 kb on - strand, within BACOVA_04621 at 18.498 kb on + strand, within BACOVA_04621 at 18.533 kb on - strand, within BACOVA_04621 at 18.533 kb on - strand, within BACOVA_04621 at 18.540 kb on + strand, within BACOVA_04621 at 18.542 kb on + strand, within BACOVA_04621 at 18.543 kb on - strand, within BACOVA_04621 at 18.543 kb on - strand, within BACOVA_04621 at 18.543 kb on - strand, within BACOVA_04621 at 18.565 kb on - strand, within BACOVA_04621 at 18.567 kb on + strand, within BACOVA_04621 at 18.571 kb on - strand, within BACOVA_04621 at 18.584 kb on + strand, within BACOVA_04621 at 18.588 kb on + strand, within BACOVA_04621 at 18.596 kb on + strand, within BACOVA_04621 at 18.596 kb on + strand, within BACOVA_04621 at 18.597 kb on - strand, within BACOVA_04621 at 18.622 kb on + strand, within BACOVA_04621 at 18.623 kb on - strand, within BACOVA_04621 at 18.623 kb on - strand, within BACOVA_04621 at 18.623 kb on - strand, within BACOVA_04621 at 18.636 kb on + strand, within BACOVA_04621 at 18.636 kb on + strand, within BACOVA_04621 at 18.637 kb on - strand, within BACOVA_04621 at 18.645 kb on + strand, within BACOVA_04621 at 18.646 kb on - strand, within BACOVA_04621 at 18.713 kb on - strand at 18.736 kb on - strand at 18.753 kb on - strand at 18.773 kb on + strand at 18.776 kb on + strand at 18.779 kb on - strand at 18.800 kb on + strand at 18.841 kb on + strand at 18.845 kb on + strand at 18.892 kb on - strand, within BACOVA_04622 at 18.897 kb on + strand, within BACOVA_04622 at 18.910 kb on + strand, within BACOVA_04622 at 18.930 kb on - strand, within BACOVA_04622 at 18.943 kb on + strand, within BACOVA_04622 at 18.944 kb on - strand, within BACOVA_04622 at 18.944 kb on - strand, within BACOVA_04622 at 18.944 kb on - strand, within BACOVA_04622 at 18.955 kb on + strand, within BACOVA_04622 at 18.955 kb on + strand, within BACOVA_04622 at 18.956 kb on - strand, within BACOVA_04622 at 18.956 kb on - strand, within BACOVA_04622 at 18.956 kb on - strand, within BACOVA_04622 at 18.962 kb on + strand, within BACOVA_04622 at 18.963 kb on - strand, within BACOVA_04622 at 18.972 kb on - strand, within BACOVA_04622 at 18.987 kb on + strand, within BACOVA_04622 at 18.987 kb on + strand, within BACOVA_04622 at 18.987 kb on + strand, within BACOVA_04622 at 18.992 kb on + strand, within BACOVA_04622 at 18.992 kb on + strand, within BACOVA_04622 at 18.992 kb on + strand, within BACOVA_04622 at 19.015 kb on + strand, within BACOVA_04622 at 19.046 kb on - strand, within BACOVA_04622 at 19.046 kb on - strand, within BACOVA_04622 at 19.046 kb on - strand, within BACOVA_04622 at 19.061 kb on - strand, within BACOVA_04622 at 19.061 kb on - strand, within BACOVA_04622 at 19.086 kb on + strand, within BACOVA_04622 at 19.103 kb on + strand, within BACOVA_04622 at 19.125 kb on + strand, within BACOVA_04622 at 19.125 kb on + strand, within BACOVA_04622 at 19.125 kb on + strand, within BACOVA_04622 at 19.129 kb on + strand, within BACOVA_04622 at 19.130 kb on - strand, within BACOVA_04622 at 19.130 kb on - strand, within BACOVA_04622 at 19.132 kb on - strand, within BACOVA_04622 at 19.149 kb on + strand, within BACOVA_04622 at 19.150 kb on - strand, within BACOVA_04622 at 19.158 kb on - strand, within BACOVA_04622 at 19.160 kb on - strand, within BACOVA_04622 at 19.160 kb on - strand, within BACOVA_04622 at 19.184 kb on - strand, within BACOVA_04622 at 19.280 kb on + strand, within BACOVA_04622 at 19.304 kb on + strand, within BACOVA_04622 at 19.305 kb on - strand, within BACOVA_04622 at 19.332 kb on - strand, within BACOVA_04622 at 19.332 kb on - strand, within BACOVA_04622 at 19.335 kb on - strand, within BACOVA_04622 at 19.369 kb on + strand, within BACOVA_04622 at 19.382 kb on + strand, within BACOVA_04622 at 19.383 kb on - strand, within BACOVA_04622 at 19.405 kb on - strand, within BACOVA_04622 at 19.415 kb on + strand, within BACOVA_04622 at 19.415 kb on + strand, within BACOVA_04622 at 19.415 kb on + strand, within BACOVA_04622 at 19.422 kb on + strand, within BACOVA_04622 at 19.423 kb on - strand, within BACOVA_04622 at 19.423 kb on - strand, within BACOVA_04622 at 19.447 kb on + strand, within BACOVA_04622 at 19.447 kb on + strand, within BACOVA_04622 at 19.448 kb on - strand, within BACOVA_04622 at 19.585 kb on - strand at 19.587 kb on - strand at 19.590 kb on + strand at 19.591 kb on - strand at 19.595 kb on + strand at 19.595 kb on + strand at 19.596 kb on - strand at 19.601 kb on - strand at 19.614 kb on + strand at 19.615 kb on - strand at 19.641 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.645 kb on + strand at 19.646 kb on - strand at 19.646 kb on - strand at 19.656 kb on - strand at 19.661 kb on + strand at 19.670 kb on + strand at 19.681 kb on - strand at 19.716 kb on + strand at 19.716 kb on + strand at 19.716 kb on + strand at 19.767 kb on + strand, within BACOVA_04623 at 19.767 kb on + strand, within BACOVA_04623 at 19.767 kb on + strand, within BACOVA_04623 at 19.769 kb on + strand, within BACOVA_04623 at 19.769 kb on + strand, within BACOVA_04623 at 19.769 kb on + strand, within BACOVA_04623 at 19.770 kb on - strand, within BACOVA_04623 at 19.770 kb on - strand, within BACOVA_04623
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 16,563 + BACOVA_04618 0.87 +1.5 16,594 + BACOVA_04618 0.89 -0.4 16,594 + BACOVA_04618 0.89 +0.5 16,612 - -1.2 16,613 + -0.6 16,614 - -1.9 16,614 - +1.0 16,616 + -0.6 16,617 - +1.6 16,654 + +0.7 16,660 + -1.5 16,660 + -1.2 16,660 + -1.0 16,661 - -0.8 16,686 + +0.5 16,686 + +0.3 16,687 - -2.2 16,687 - +0.2 16,696 + -1.4 16,697 - -0.8 16,702 + +1.0 16,703 - -1.5 16,703 - -0.5 16,703 - -0.8 16,919 + -0.8 16,933 + -1.5 16,933 + -1.2 17,020 + +0.7 17,021 - -1.0 17,024 + -0.8 17,082 + -2.4 17,153 - +1.3 17,162 - -1.9 17,162 - -0.9 17,164 - -1.3 17,334 - BACOVA_04620 0.41 -1.7 17,479 - -0.1 17,530 - -0.6 17,535 + +0.7 17,597 + -2.0 17,597 + -2.5 17,598 - +0.5 17,603 + -2.3 17,622 + -0.6 17,623 - -0.2 17,632 + -1.4 17,670 + BACOVA_04621 0.13 -1.0 17,680 - BACOVA_04621 0.14 -1.2 17,692 - BACOVA_04621 0.15 -0.3 17,701 - BACOVA_04621 0.15 +1.3 17,720 - BACOVA_04621 0.17 +1.5 17,720 - BACOVA_04621 0.17 +0.9 17,720 - BACOVA_04621 0.17 +0.2 17,728 + BACOVA_04621 0.17 -1.4 17,728 + BACOVA_04621 0.17 -0.0 17,728 + BACOVA_04621 0.17 -0.5 17,729 - BACOVA_04621 0.17 +0.0 17,730 + BACOVA_04621 0.18 -0.9 17,730 + BACOVA_04621 0.18 -1.9 17,750 - BACOVA_04621 0.19 -2.2 17,766 + BACOVA_04621 0.20 -2.0 17,766 + BACOVA_04621 0.20 +0.2 17,766 + BACOVA_04621 0.20 +0.5 17,774 + BACOVA_04621 0.21 -1.1 17,798 + BACOVA_04621 0.23 -2.4 17,860 + BACOVA_04621 0.28 +0.3 17,861 - BACOVA_04621 0.28 -0.6 17,866 + BACOVA_04621 0.28 +0.7 17,871 + BACOVA_04621 0.29 +0.0 17,899 - BACOVA_04621 0.31 -0.6 17,939 + BACOVA_04621 0.34 -0.2 17,943 + BACOVA_04621 0.34 -0.3 17,943 + BACOVA_04621 0.34 +0.2 17,944 - BACOVA_04621 0.34 -2.3 17,944 - BACOVA_04621 0.34 -2.7 17,999 + BACOVA_04621 0.39 -0.2 18,000 - BACOVA_04621 0.39 -2.2 18,004 + BACOVA_04621 0.39 -1.4 18,005 - BACOVA_04621 0.39 -0.2 18,060 + BACOVA_04621 0.43 -0.6 18,060 + BACOVA_04621 0.43 -0.1 18,060 + BACOVA_04621 0.43 +0.3 18,061 - BACOVA_04621 0.44 -0.9 18,064 + BACOVA_04621 0.44 +0.9 18,072 + BACOVA_04621 0.44 -1.0 18,126 + BACOVA_04621 0.49 -1.2 18,161 + BACOVA_04621 0.51 -1.4 18,194 - BACOVA_04621 0.54 +0.5 18,197 + BACOVA_04621 0.54 -1.4 18,222 - BACOVA_04621 0.56 -0.6 18,276 - BACOVA_04621 0.60 -0.6 18,313 - BACOVA_04621 0.63 -0.2 18,337 - BACOVA_04621 0.65 +1.4 18,371 - BACOVA_04621 0.68 +1.2 18,416 + BACOVA_04621 0.71 -0.0 18,417 - BACOVA_04621 0.71 -1.0 18,417 - BACOVA_04621 0.71 -0.0 18,445 - BACOVA_04621 0.74 +0.3 18,446 + BACOVA_04621 0.74 +0.5 18,446 + BACOVA_04621 0.74 -1.1 18,447 - BACOVA_04621 0.74 -0.9 18,468 + BACOVA_04621 0.75 -1.5 18,469 - BACOVA_04621 0.76 +1.2 18,477 - BACOVA_04621 0.76 +0.8 18,498 + BACOVA_04621 0.78 +0.3 18,533 - BACOVA_04621 0.81 -0.6 18,533 - BACOVA_04621 0.81 -0.6 18,540 + BACOVA_04621 0.81 +0.9 18,542 + BACOVA_04621 0.81 -0.2 18,543 - BACOVA_04621 0.81 +0.3 18,543 - BACOVA_04621 0.81 +0.1 18,543 - BACOVA_04621 0.81 +1.7 18,565 - BACOVA_04621 0.83 +0.1 18,567 + BACOVA_04621 0.83 +1.2 18,571 - BACOVA_04621 0.84 +0.0 18,584 + BACOVA_04621 0.85 +0.1 18,588 + BACOVA_04621 0.85 +0.7 18,596 + BACOVA_04621 0.85 -0.1 18,596 + BACOVA_04621 0.85 -2.8 18,597 - BACOVA_04621 0.86 -0.8 18,622 + BACOVA_04621 0.88 -0.1 18,623 - BACOVA_04621 0.88 +0.9 18,623 - BACOVA_04621 0.88 +0.9 18,623 - BACOVA_04621 0.88 +0.0 18,636 + BACOVA_04621 0.89 -0.8 18,636 + BACOVA_04621 0.89 +0.2 18,637 - BACOVA_04621 0.89 +1.7 18,645 + BACOVA_04621 0.89 -1.0 18,646 - BACOVA_04621 0.89 +0.5 18,713 - +0.5 18,736 - +0.1 18,753 - -0.8 18,773 + -1.7 18,776 + -1.1 18,779 - -0.9 18,800 + -0.8 18,841 + -0.1 18,845 + +3.2 18,892 - BACOVA_04622 0.11 -2.4 18,897 + BACOVA_04622 0.12 -0.1 18,910 + BACOVA_04622 0.13 +1.2 18,930 - BACOVA_04622 0.16 -0.9 18,943 + BACOVA_04622 0.17 -0.9 18,944 - BACOVA_04622 0.17 -0.5 18,944 - BACOVA_04622 0.17 +0.2 18,944 - BACOVA_04622 0.17 +0.2 18,955 + BACOVA_04622 0.19 -0.5 18,955 + BACOVA_04622 0.19 +0.0 18,956 - BACOVA_04622 0.19 -0.1 18,956 - BACOVA_04622 0.19 +2.3 18,956 - BACOVA_04622 0.19 -0.9 18,962 + BACOVA_04622 0.20 +0.0 18,963 - BACOVA_04622 0.20 +0.2 18,972 - BACOVA_04622 0.21 -0.2 18,987 + BACOVA_04622 0.23 +0.2 18,987 + BACOVA_04622 0.23 -1.1 18,987 + BACOVA_04622 0.23 -1.3 18,992 + BACOVA_04622 0.23 -0.1 18,992 + BACOVA_04622 0.23 +1.2 18,992 + BACOVA_04622 0.23 +0.2 19,015 + BACOVA_04622 0.26 -1.4 19,046 - BACOVA_04622 0.30 -0.6 19,046 - BACOVA_04622 0.30 -0.6 19,046 - BACOVA_04622 0.30 +0.9 19,061 - BACOVA_04622 0.32 +0.5 19,061 - BACOVA_04622 0.32 +0.0 19,086 + BACOVA_04622 0.35 +0.2 19,103 + BACOVA_04622 0.37 -1.3 19,125 + BACOVA_04622 0.40 -0.7 19,125 + BACOVA_04622 0.40 +0.3 19,125 + BACOVA_04622 0.40 +0.9 19,129 + BACOVA_04622 0.41 -2.2 19,130 - BACOVA_04622 0.41 -1.1 19,130 - BACOVA_04622 0.41 +0.9 19,132 - BACOVA_04622 0.41 +0.3 19,149 + BACOVA_04622 0.43 +1.5 19,150 - BACOVA_04622 0.43 -1.7 19,158 - BACOVA_04622 0.44 -0.3 19,160 - BACOVA_04622 0.44 -0.9 19,160 - BACOVA_04622 0.44 +0.5 19,184 - BACOVA_04622 0.47 -1.3 19,280 + BACOVA_04622 0.59 -0.4 19,304 + BACOVA_04622 0.62 +1.0 19,305 - BACOVA_04622 0.63 -0.2 19,332 - BACOVA_04622 0.66 -1.2 19,332 - BACOVA_04622 0.66 -0.2 19,335 - BACOVA_04622 0.66 +1.5 19,369 + BACOVA_04622 0.71 -0.0 19,382 + BACOVA_04622 0.72 +1.8 19,383 - BACOVA_04622 0.72 -1.6 19,405 - BACOVA_04622 0.75 -0.6 19,415 + BACOVA_04622 0.76 -0.1 19,415 + BACOVA_04622 0.76 +1.2 19,415 + BACOVA_04622 0.76 -0.1 19,422 + BACOVA_04622 0.77 +1.5 19,423 - BACOVA_04622 0.77 +0.5 19,423 - BACOVA_04622 0.77 -1.0 19,447 + BACOVA_04622 0.80 +0.2 19,447 + BACOVA_04622 0.80 -0.5 19,448 - BACOVA_04622 0.80 -2.6 19,585 - +0.3 19,587 - -1.0 19,590 + -1.1 19,591 - -1.8 19,595 + +0.3 19,595 + -0.5 19,596 - -0.7 19,601 - -0.6 19,614 + -2.3 19,615 - +0.4 19,641 + -1.2 19,645 + +1.7 19,645 + +0.1 19,645 + -1.6 19,646 - -0.2 19,646 - -0.4 19,656 - -0.1 19,661 + -2.2 19,670 + -0.7 19,681 - -1.4 19,716 + -1.0 19,716 + -2.2 19,716 + -2.2 19,767 + BACOVA_04623 0.12 -0.3 19,767 + BACOVA_04623 0.12 -0.4 19,767 + BACOVA_04623 0.12 -0.2 19,769 + BACOVA_04623 0.12 +1.4 19,769 + BACOVA_04623 0.12 -1.1 19,769 + BACOVA_04623 0.12 -0.2 19,770 - BACOVA_04623 0.12 -1.9 19,770 - BACOVA_04623 0.12 +0.3
Or see this region's nucleotide sequence