Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04295

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04294 and BACOVA_04295 are separated by 62 nucleotidesBACOVA_04295 and BACOVA_04296 are separated by 279 nucleotides BACOVA_04294: BACOVA_04294 - SusD family protein, at 186,767 to 188,104 _04294 BACOVA_04295: BACOVA_04295 - hypothetical protein, at 188,167 to 188,265 _04295 BACOVA_04296: BACOVA_04296 - hypothetical protein, at 188,545 to 189,228 _04296 Position (kb) 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.167 kb on - strand, within BACOVA_04294at 187.181 kb on + strand, within BACOVA_04294at 187.183 kb on + strand, within BACOVA_04294at 187.184 kb on - strand, within BACOVA_04294at 187.184 kb on - strand, within BACOVA_04294at 187.220 kb on + strand, within BACOVA_04294at 187.220 kb on + strand, within BACOVA_04294at 187.221 kb on - strand, within BACOVA_04294at 187.222 kb on + strand, within BACOVA_04294at 187.223 kb on - strand, within BACOVA_04294at 187.223 kb on - strand, within BACOVA_04294at 187.288 kb on - strand, within BACOVA_04294at 187.288 kb on - strand, within BACOVA_04294at 187.315 kb on - strand, within BACOVA_04294at 187.316 kb on + strand, within BACOVA_04294at 187.316 kb on + strand, within BACOVA_04294at 187.317 kb on - strand, within BACOVA_04294at 187.318 kb on + strand, within BACOVA_04294at 187.319 kb on - strand, within BACOVA_04294at 187.338 kb on + strand, within BACOVA_04294at 187.338 kb on + strand, within BACOVA_04294at 187.339 kb on - strand, within BACOVA_04294at 187.339 kb on - strand, within BACOVA_04294at 187.364 kb on - strand, within BACOVA_04294at 187.364 kb on - strand, within BACOVA_04294at 187.386 kb on - strand, within BACOVA_04294at 187.407 kb on + strand, within BACOVA_04294at 187.408 kb on - strand, within BACOVA_04294at 187.413 kb on + strand, within BACOVA_04294at 187.437 kb on - strand, within BACOVA_04294at 187.441 kb on - strand, within BACOVA_04294at 187.441 kb on - strand, within BACOVA_04294at 187.441 kb on - strand, within BACOVA_04294at 187.466 kb on + strand, within BACOVA_04294at 187.483 kb on + strand, within BACOVA_04294at 187.484 kb on - strand, within BACOVA_04294at 187.485 kb on + strand, within BACOVA_04294at 187.485 kb on + strand, within BACOVA_04294at 187.486 kb on - strand, within BACOVA_04294at 187.486 kb on - strand, within BACOVA_04294at 187.486 kb on - strand, within BACOVA_04294at 187.488 kb on + strand, within BACOVA_04294at 187.509 kb on + strand, within BACOVA_04294at 187.540 kb on + strand, within BACOVA_04294at 187.550 kb on - strand, within BACOVA_04294at 187.598 kb on + strand, within BACOVA_04294at 187.614 kb on + strand, within BACOVA_04294at 187.640 kb on + strand, within BACOVA_04294at 187.677 kb on - strand, within BACOVA_04294at 187.677 kb on - strand, within BACOVA_04294at 187.677 kb on - strand, within BACOVA_04294at 187.702 kb on + strand, within BACOVA_04294at 187.739 kb on - strand, within BACOVA_04294at 187.801 kb on - strand, within BACOVA_04294at 187.847 kb on - strand, within BACOVA_04294at 187.847 kb on - strand, within BACOVA_04294at 187.882 kb on - strand, within BACOVA_04294at 187.906 kb on - strand, within BACOVA_04294at 188.016 kb on + strandat 188.017 kb on - strandat 188.031 kb on + strandat 188.032 kb on - strandat 188.083 kb on + strandat 188.105 kb on + strandat 188.145 kb on + strandat 188.145 kb on + strandat 188.145 kb on + strandat 188.146 kb on - strandat 188.197 kb on - strand, within BACOVA_04295at 188.197 kb on - strand, within BACOVA_04295at 188.201 kb on - strand, within BACOVA_04295at 188.273 kb on + strandat 188.303 kb on + strandat 188.303 kb on + strandat 188.303 kb on + strandat 188.316 kb on - strandat 188.321 kb on - strandat 188.321 kb on - strandat 188.331 kb on - strandat 188.338 kb on + strandat 188.408 kb on + strandat 188.409 kb on - strandat 188.410 kb on + strandat 188.410 kb on + strandat 188.411 kb on - strandat 188.500 kb on + strandat 188.501 kb on - strandat 188.502 kb on + strandat 188.502 kb on + strandat 188.502 kb on + strandat 188.503 kb on - strandat 188.503 kb on - strandat 188.504 kb on + strandat 188.504 kb on + strandat 188.504 kb on + strandat 188.505 kb on - strandat 188.505 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.507 kb on - strandat 188.543 kb on + strandat 188.543 kb on + strandat 188.556 kb on + strandat 188.556 kb on + strandat 188.559 kb on + strandat 188.560 kb on - strandat 188.560 kb on - strandat 188.582 kb on + strandat 188.595 kb on - strandat 188.598 kb on + strandat 188.601 kb on + strandat 188.677 kb on + strand, within BACOVA_04296at 188.677 kb on + strand, within BACOVA_04296at 188.683 kb on - strand, within BACOVA_04296at 188.685 kb on + strand, within BACOVA_04296at 188.686 kb on - strand, within BACOVA_04296at 188.686 kb on - strand, within BACOVA_04296at 188.716 kb on + strand, within BACOVA_04296at 188.747 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.756 kb on + strand, within BACOVA_04296at 188.815 kb on - strand, within BACOVA_04296at 188.858 kb on + strand, within BACOVA_04296at 188.858 kb on + strand, within BACOVA_04296at 188.859 kb on - strand, within BACOVA_04296at 188.902 kb on + strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.921 kb on - strand, within BACOVA_04296at 188.951 kb on + strand, within BACOVA_04296at 188.979 kb on - strand, within BACOVA_04296at 188.991 kb on + strand, within BACOVA_04296at 188.992 kb on - strand, within BACOVA_04296at 188.992 kb on - strand, within BACOVA_04296at 189.098 kb on + strand, within BACOVA_04296at 189.108 kb on + strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.109 kb on - strand, within BACOVA_04296at 189.119 kb on + strand, within BACOVA_04296at 189.120 kb on - strand, within BACOVA_04296at 189.129 kb on + strand, within BACOVA_04296at 189.155 kb on - strand, within BACOVA_04296at 189.165 kb on - strandat 189.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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187,167 - BACOVA_04294 0.30 -1.1
187,181 + BACOVA_04294 0.31 -2.4
187,183 + BACOVA_04294 0.31 -0.8
187,184 - BACOVA_04294 0.31 +1.0
187,184 - BACOVA_04294 0.31 -0.3
187,220 + BACOVA_04294 0.34 +0.6
187,220 + BACOVA_04294 0.34 -0.7
187,221 - BACOVA_04294 0.34 -0.8
187,222 + BACOVA_04294 0.34 -0.1
187,223 - BACOVA_04294 0.34 +0.5
187,223 - BACOVA_04294 0.34 +0.7
187,288 - BACOVA_04294 0.39 +0.1
187,288 - BACOVA_04294 0.39 -0.1
187,315 - BACOVA_04294 0.41 -1.4
187,316 + BACOVA_04294 0.41 -2.5
187,316 + BACOVA_04294 0.41 +1.4
187,317 - BACOVA_04294 0.41 -0.6
187,318 + BACOVA_04294 0.41 +0.4
187,319 - BACOVA_04294 0.41 +0.2
187,338 + BACOVA_04294 0.43 +0.2
187,338 + BACOVA_04294 0.43 +0.5
187,339 - BACOVA_04294 0.43 -1.1
187,339 - BACOVA_04294 0.43 -0.8
187,364 - BACOVA_04294 0.45 -1.3
187,364 - BACOVA_04294 0.45 +0.2
187,386 - BACOVA_04294 0.46 -1.4
187,407 + BACOVA_04294 0.48 +0.4
187,408 - BACOVA_04294 0.48 -0.9
187,413 + BACOVA_04294 0.48 -0.3
187,437 - BACOVA_04294 0.50 -1.3
187,441 - BACOVA_04294 0.50 -0.1
187,441 - BACOVA_04294 0.50 +0.9
187,441 - BACOVA_04294 0.50 -1.1
187,466 + BACOVA_04294 0.52 +0.0
187,483 + BACOVA_04294 0.54 -0.5
187,484 - BACOVA_04294 0.54 +0.3
187,485 + BACOVA_04294 0.54 -0.3
187,485 + BACOVA_04294 0.54 +0.5
187,486 - BACOVA_04294 0.54 -1.4
187,486 - BACOVA_04294 0.54 -0.4
187,486 - BACOVA_04294 0.54 -2.9
187,488 + BACOVA_04294 0.54 -0.1
187,509 + BACOVA_04294 0.55 +0.6
187,540 + BACOVA_04294 0.58 +1.9
187,550 - BACOVA_04294 0.59 -0.1
187,598 + BACOVA_04294 0.62 +1.6
187,614 + BACOVA_04294 0.63 -1.6
187,640 + BACOVA_04294 0.65 +0.3
187,677 - BACOVA_04294 0.68 +1.9
187,677 - BACOVA_04294 0.68 -0.0
187,677 - BACOVA_04294 0.68 +0.6
187,702 + BACOVA_04294 0.70 -0.6
187,739 - BACOVA_04294 0.73 -3.2
187,801 - BACOVA_04294 0.77 -1.0
187,847 - BACOVA_04294 0.81 +0.6
187,847 - BACOVA_04294 0.81 -1.7
187,882 - BACOVA_04294 0.83 -0.3
187,906 - BACOVA_04294 0.85 -0.3
188,016 + -0.5
188,017 - +0.7
188,031 + -1.1
188,032 - -0.3
188,083 + +0.3
188,105 + -0.9
188,145 + -3.6
188,145 + +1.0
188,145 + -1.4
188,146 - -1.2
188,197 - BACOVA_04295 0.30 +0.4
188,197 - BACOVA_04295 0.30 -0.3
188,201 - BACOVA_04295 0.34 +0.5
188,273 + +0.4
188,303 + -0.7
188,303 + -1.8
188,303 + -0.3
188,316 - -1.9
188,321 - +0.6
188,321 - +0.3
188,331 - +0.1
188,338 + -0.6
188,408 + +1.0
188,409 - -1.8
188,410 + +0.3
188,410 + +1.7
188,411 - +0.9
188,500 + -0.1
188,501 - -0.3
188,502 + -0.1
188,502 + -0.6
188,502 + +1.6
188,503 - -0.2
188,503 - +1.5
188,504 + -1.1
188,504 + -0.8
188,504 + +1.1
188,505 - -0.1
188,505 - -1.8
188,507 - +0.3
188,507 - +0.4
188,507 - -2.1
188,507 - -0.3
188,543 + -1.9
188,543 + +1.2
188,556 + +0.9
188,556 + +0.5
188,559 + +1.5
188,560 - -0.0
188,560 - +0.3
188,582 + +1.1
188,595 - -0.5
188,598 + -0.4
188,601 + +1.1
188,677 + BACOVA_04296 0.19 +0.9
188,677 + BACOVA_04296 0.19 +1.4
188,683 - BACOVA_04296 0.20 -1.0
188,685 + BACOVA_04296 0.20 +0.4
188,686 - BACOVA_04296 0.21 -0.0
188,686 - BACOVA_04296 0.21 -0.6
188,716 + BACOVA_04296 0.25 -2.6
188,747 + BACOVA_04296 0.30 -1.5
188,756 + BACOVA_04296 0.31 +0.6
188,756 + BACOVA_04296 0.31 -0.1
188,756 + BACOVA_04296 0.31 -0.0
188,815 - BACOVA_04296 0.39 +0.3
188,858 + BACOVA_04296 0.46 -0.4
188,858 + BACOVA_04296 0.46 +1.7
188,859 - BACOVA_04296 0.46 -3.1
188,902 + BACOVA_04296 0.52 -0.0
188,921 - BACOVA_04296 0.55 +0.7
188,921 - BACOVA_04296 0.55 -2.1
188,921 - BACOVA_04296 0.55 -1.1
188,951 + BACOVA_04296 0.59 +0.2
188,979 - BACOVA_04296 0.63 -0.3
188,991 + BACOVA_04296 0.65 +0.6
188,992 - BACOVA_04296 0.65 -1.9
188,992 - BACOVA_04296 0.65 +0.4
189,098 + BACOVA_04296 0.81 +0.4
189,108 + BACOVA_04296 0.82 +0.1
189,109 - BACOVA_04296 0.82 -1.5
189,109 - BACOVA_04296 0.82 -0.7
189,109 - BACOVA_04296 0.82 -0.0
189,119 + BACOVA_04296 0.84 -0.7
189,120 - BACOVA_04296 0.84 -0.7
189,129 + BACOVA_04296 0.85 +0.1
189,155 - BACOVA_04296 0.89 +0.5
189,165 - +1.0
189,165 - -0.3

Or see this region's nucleotide sequence