Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03575 and BACOVA_03576 are separated by 282 nucleotides BACOVA_03576 and BACOVA_03577 are separated by 21 nucleotides
BACOVA_03575: BACOVA_03575 - hypothetical protein, at 358,779 to 360,419
_03575
BACOVA_03576: BACOVA_03576 - Pectinesterase, at 360,702 to 362,321
_03576
BACOVA_03577: BACOVA_03577 - hypothetical protein, at 362,343 to 364,823
_03577
Position (kb) 360
361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 359.702 kb on - strand, within BACOVA_03575 at 359.702 kb on - strand, within BACOVA_03575 at 359.753 kb on + strand, within BACOVA_03575 at 359.784 kb on - strand, within BACOVA_03575 at 359.786 kb on + strand, within BACOVA_03575 at 359.802 kb on - strand, within BACOVA_03575 at 359.802 kb on - strand, within BACOVA_03575 at 359.802 kb on - strand, within BACOVA_03575 at 359.811 kb on - strand, within BACOVA_03575 at 359.813 kb on + strand, within BACOVA_03575 at 359.813 kb on + strand, within BACOVA_03575 at 359.814 kb on - strand, within BACOVA_03575 at 359.818 kb on + strand, within BACOVA_03575 at 359.873 kb on + strand, within BACOVA_03575 at 359.873 kb on + strand, within BACOVA_03575 at 359.939 kb on + strand, within BACOVA_03575 at 359.962 kb on + strand, within BACOVA_03575 at 359.973 kb on + strand, within BACOVA_03575 at 359.974 kb on - strand, within BACOVA_03575 at 360.018 kb on - strand, within BACOVA_03575 at 360.085 kb on - strand, within BACOVA_03575 at 360.088 kb on + strand, within BACOVA_03575 at 360.089 kb on - strand, within BACOVA_03575 at 360.104 kb on + strand, within BACOVA_03575 at 360.105 kb on - strand, within BACOVA_03575 at 360.105 kb on - strand, within BACOVA_03575 at 360.117 kb on + strand, within BACOVA_03575 at 360.118 kb on - strand, within BACOVA_03575 at 360.191 kb on + strand, within BACOVA_03575 at 360.192 kb on - strand, within BACOVA_03575 at 360.192 kb on - strand, within BACOVA_03575 at 360.195 kb on + strand, within BACOVA_03575 at 360.195 kb on + strand, within BACOVA_03575 at 360.195 kb on + strand, within BACOVA_03575 at 360.219 kb on - strand, within BACOVA_03575 at 360.256 kb on + strand at 360.270 kb on + strand at 360.270 kb on + strand at 360.283 kb on - strand at 360.318 kb on - strand at 360.320 kb on + strand at 360.363 kb on + strand at 360.364 kb on - strand at 360.382 kb on - strand at 360.419 kb on + strand at 360.425 kb on - strand at 360.425 kb on - strand at 360.452 kb on - strand at 360.452 kb on - strand at 360.464 kb on - strand at 360.464 kb on - strand at 360.464 kb on - strand at 360.471 kb on + strand at 360.471 kb on + strand at 360.505 kb on + strand at 360.506 kb on - strand at 360.506 kb on - strand at 360.509 kb on + strand at 360.509 kb on + strand at 360.555 kb on - strand at 360.581 kb on - strand at 360.592 kb on - strand at 360.607 kb on + strand at 360.628 kb on - strand at 360.656 kb on + strand at 360.676 kb on - strand at 360.676 kb on - strand at 360.682 kb on - strand at 360.682 kb on - strand at 360.689 kb on + strand at 360.702 kb on - strand at 360.740 kb on - strand at 360.788 kb on + strand at 360.833 kb on - strand at 360.833 kb on - strand at 360.894 kb on + strand, within BACOVA_03576 at 360.973 kb on - strand, within BACOVA_03576 at 360.979 kb on - strand, within BACOVA_03576 at 360.995 kb on + strand, within BACOVA_03576 at 360.996 kb on - strand, within BACOVA_03576 at 360.996 kb on - strand, within BACOVA_03576 at 361.068 kb on - strand, within BACOVA_03576 at 361.071 kb on - strand, within BACOVA_03576 at 361.115 kb on - strand, within BACOVA_03576 at 361.155 kb on - strand, within BACOVA_03576 at 361.161 kb on - strand, within BACOVA_03576 at 361.161 kb on - strand, within BACOVA_03576 at 361.178 kb on + strand, within BACOVA_03576 at 361.179 kb on - strand, within BACOVA_03576 at 361.234 kb on - strand, within BACOVA_03576 at 361.234 kb on - strand, within BACOVA_03576 at 361.246 kb on + strand, within BACOVA_03576 at 361.246 kb on + strand, within BACOVA_03576 at 361.247 kb on - strand, within BACOVA_03576 at 361.269 kb on + strand, within BACOVA_03576 at 361.271 kb on + strand, within BACOVA_03576 at 361.323 kb on - strand, within BACOVA_03576 at 361.409 kb on - strand, within BACOVA_03576 at 361.442 kb on + strand, within BACOVA_03576 at 361.445 kb on - strand, within BACOVA_03576 at 361.503 kb on + strand, within BACOVA_03576 at 361.504 kb on - strand, within BACOVA_03576 at 361.504 kb on - strand, within BACOVA_03576 at 361.504 kb on - strand, within BACOVA_03576 at 361.504 kb on - strand, within BACOVA_03576 at 361.532 kb on + strand, within BACOVA_03576 at 361.599 kb on + strand, within BACOVA_03576 at 361.600 kb on - strand, within BACOVA_03576 at 361.635 kb on + strand, within BACOVA_03576 at 361.635 kb on + strand, within BACOVA_03576 at 361.636 kb on - strand, within BACOVA_03576 at 361.642 kb on - strand, within BACOVA_03576 at 361.682 kb on + strand, within BACOVA_03576 at 361.683 kb on - strand, within BACOVA_03576 at 361.703 kb on + strand, within BACOVA_03576 at 361.704 kb on - strand, within BACOVA_03576 at 361.704 kb on - strand, within BACOVA_03576 at 361.755 kb on - strand, within BACOVA_03576 at 361.787 kb on + strand, within BACOVA_03576 at 361.837 kb on + strand, within BACOVA_03576 at 361.838 kb on - strand, within BACOVA_03576 at 361.838 kb on - strand, within BACOVA_03576 at 361.839 kb on + strand, within BACOVA_03576 at 361.840 kb on - strand, within BACOVA_03576 at 361.862 kb on - strand, within BACOVA_03576 at 361.868 kb on - strand, within BACOVA_03576 at 361.899 kb on - strand, within BACOVA_03576 at 361.899 kb on - strand, within BACOVA_03576 at 361.921 kb on - strand, within BACOVA_03576 at 361.922 kb on + strand, within BACOVA_03576 at 361.928 kb on + strand, within BACOVA_03576 at 361.928 kb on + strand, within BACOVA_03576 at 361.929 kb on - strand, within BACOVA_03576 at 361.929 kb on - strand, within BACOVA_03576 at 361.929 kb on - strand, within BACOVA_03576 at 361.935 kb on - strand, within BACOVA_03576 at 361.951 kb on + strand, within BACOVA_03576 at 361.951 kb on + strand, within BACOVA_03576 at 361.952 kb on - strand, within BACOVA_03576 at 361.978 kb on - strand, within BACOVA_03576 at 361.979 kb on + strand, within BACOVA_03576 at 361.979 kb on + strand, within BACOVA_03576 at 361.979 kb on + strand, within BACOVA_03576 at 361.980 kb on - strand, within BACOVA_03576 at 361.980 kb on - strand, within BACOVA_03576 at 362.009 kb on - strand, within BACOVA_03576 at 362.062 kb on - strand, within BACOVA_03576 at 362.109 kb on - strand, within BACOVA_03576 at 362.119 kb on + strand, within BACOVA_03576 at 362.190 kb on + strand at 362.191 kb on - strand at 362.224 kb on + strand at 362.244 kb on - strand at 362.244 kb on - strand at 362.289 kb on + strand at 362.289 kb on + strand at 362.290 kb on - strand at 362.357 kb on + strand at 362.358 kb on - strand at 362.358 kb on - strand at 362.362 kb on + strand at 362.372 kb on + strand at 362.373 kb on - strand at 362.421 kb on + strand at 362.423 kb on + strand at 362.428 kb on + strand at 362.428 kb on + strand at 362.429 kb on - strand at 362.565 kb on + strand at 362.721 kb on - strand, within BACOVA_03577 at 362.758 kb on - strand, within BACOVA_03577 at 362.774 kb on - strand, within BACOVA_03577 at 362.774 kb on - strand, within BACOVA_03577 at 362.774 kb on - strand, within BACOVA_03577 at 362.774 kb on - strand, within BACOVA_03577 at 362.786 kb on - strand, within BACOVA_03577 at 362.786 kb on - strand, within BACOVA_03577 at 362.807 kb on - strand, within BACOVA_03577 at 362.870 kb on + strand, within BACOVA_03577 at 362.943 kb on - strand, within BACOVA_03577 at 362.943 kb on - strand, within BACOVA_03577 at 362.945 kb on + strand, within BACOVA_03577 at 362.946 kb on - strand, within BACOVA_03577 at 362.950 kb on - strand, within BACOVA_03577 at 362.978 kb on + strand, within BACOVA_03577 at 362.979 kb on - strand, within BACOVA_03577 at 362.979 kb on - strand, within BACOVA_03577 at 362.982 kb on - strand, within BACOVA_03577 at 363.018 kb on + strand, within BACOVA_03577 at 363.019 kb on - strand, within BACOVA_03577 at 363.019 kb on - strand, within BACOVA_03577 at 363.044 kb on + strand, within BACOVA_03577 at 363.080 kb on - strand, within BACOVA_03577 at 363.107 kb on + strand, within BACOVA_03577 at 363.107 kb on + strand, within BACOVA_03577 at 363.114 kb on + strand, within BACOVA_03577 at 363.114 kb on + strand, within BACOVA_03577 at 363.114 kb on + strand, within BACOVA_03577 at 363.115 kb on - strand, within BACOVA_03577 at 363.152 kb on + strand, within BACOVA_03577 at 363.152 kb on + strand, within BACOVA_03577 at 363.152 kb on + strand, within BACOVA_03577 at 363.154 kb on + strand, within BACOVA_03577 at 363.154 kb on + strand, within BACOVA_03577 at 363.168 kb on + strand, within BACOVA_03577 at 363.179 kb on + strand, within BACOVA_03577 at 363.180 kb on - strand, within BACOVA_03577 at 363.212 kb on + strand, within BACOVA_03577 at 363.213 kb on - strand, within BACOVA_03577 at 363.216 kb on - strand, within BACOVA_03577 at 363.234 kb on - strand, within BACOVA_03577 at 363.313 kb on + strand, within BACOVA_03577 at 363.314 kb on - strand, within BACOVA_03577 at 363.314 kb on - strand, within BACOVA_03577 at 363.314 kb on - strand, within BACOVA_03577
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 359,702 - BACOVA_03575 0.56 -1.2 359,702 - BACOVA_03575 0.56 -0.9 359,753 + BACOVA_03575 0.59 +0.4 359,784 - BACOVA_03575 0.61 -1.0 359,786 + BACOVA_03575 0.61 -1.5 359,802 - BACOVA_03575 0.62 -0.1 359,802 - BACOVA_03575 0.62 -2.0 359,802 - BACOVA_03575 0.62 -0.4 359,811 - BACOVA_03575 0.63 -0.5 359,813 + BACOVA_03575 0.63 -0.1 359,813 + BACOVA_03575 0.63 +0.4 359,814 - BACOVA_03575 0.63 +0.9 359,818 + BACOVA_03575 0.63 -2.7 359,873 + BACOVA_03575 0.67 -0.8 359,873 + BACOVA_03575 0.67 -0.5 359,939 + BACOVA_03575 0.71 +1.4 359,962 + BACOVA_03575 0.72 +1.1 359,973 + BACOVA_03575 0.73 +0.3 359,974 - BACOVA_03575 0.73 +0.1 360,018 - BACOVA_03575 0.76 -0.4 360,085 - BACOVA_03575 0.80 -0.6 360,088 + BACOVA_03575 0.80 +1.0 360,089 - BACOVA_03575 0.80 -0.5 360,104 + BACOVA_03575 0.81 -0.2 360,105 - BACOVA_03575 0.81 -1.1 360,105 - BACOVA_03575 0.81 +0.9 360,117 + BACOVA_03575 0.82 -0.5 360,118 - BACOVA_03575 0.82 -1.1 360,191 + BACOVA_03575 0.86 +0.1 360,192 - BACOVA_03575 0.86 -1.4 360,192 - BACOVA_03575 0.86 -0.5 360,195 + BACOVA_03575 0.86 -1.0 360,195 + BACOVA_03575 0.86 +1.7 360,195 + BACOVA_03575 0.86 -0.1 360,219 - BACOVA_03575 0.88 +0.1 360,256 + +0.9 360,270 + -1.7 360,270 + -0.3 360,283 - -0.9 360,318 - -1.7 360,320 + -0.1 360,363 + +0.6 360,364 - +0.4 360,382 - +1.5 360,419 + +0.1 360,425 - +0.4 360,425 - -1.1 360,452 - -0.6 360,452 - -0.9 360,464 - -0.6 360,464 - -0.6 360,464 - -1.2 360,471 + +0.4 360,471 + +0.2 360,505 + -0.5 360,506 - -1.2 360,506 - +0.1 360,509 + +0.8 360,509 + +0.8 360,555 - -0.4 360,581 - -1.3 360,592 - +0.6 360,607 + -2.1 360,628 - +1.1 360,656 + -0.2 360,676 - -0.1 360,676 - -0.4 360,682 - +1.0 360,682 - +0.3 360,689 + +2.0 360,702 - -0.4 360,740 - -1.0 360,788 + +0.2 360,833 - +1.0 360,833 - +0.1 360,894 + BACOVA_03576 0.12 +0.4 360,973 - BACOVA_03576 0.17 -0.1 360,979 - BACOVA_03576 0.17 +1.0 360,995 + BACOVA_03576 0.18 +0.2 360,996 - BACOVA_03576 0.18 +0.6 360,996 - BACOVA_03576 0.18 +2.0 361,068 - BACOVA_03576 0.23 -1.6 361,071 - BACOVA_03576 0.23 +0.3 361,115 - BACOVA_03576 0.25 -0.1 361,155 - BACOVA_03576 0.28 +0.5 361,161 - BACOVA_03576 0.28 +0.3 361,161 - BACOVA_03576 0.28 -0.5 361,178 + BACOVA_03576 0.29 +1.4 361,179 - BACOVA_03576 0.29 -1.0 361,234 - BACOVA_03576 0.33 +0.7 361,234 - BACOVA_03576 0.33 -1.3 361,246 + BACOVA_03576 0.34 -1.4 361,246 + BACOVA_03576 0.34 -0.5 361,247 - BACOVA_03576 0.34 -2.0 361,269 + BACOVA_03576 0.35 -1.2 361,271 + BACOVA_03576 0.35 +0.4 361,323 - BACOVA_03576 0.38 +0.3 361,409 - BACOVA_03576 0.44 +0.8 361,442 + BACOVA_03576 0.46 -0.1 361,445 - BACOVA_03576 0.46 +0.3 361,503 + BACOVA_03576 0.49 -1.4 361,504 - BACOVA_03576 0.50 -0.2 361,504 - BACOVA_03576 0.50 -0.0 361,504 - BACOVA_03576 0.50 +0.4 361,504 - BACOVA_03576 0.50 -0.6 361,532 + BACOVA_03576 0.51 +0.9 361,599 + BACOVA_03576 0.55 -0.1 361,600 - BACOVA_03576 0.55 -0.7 361,635 + BACOVA_03576 0.58 -0.3 361,635 + BACOVA_03576 0.58 -0.1 361,636 - BACOVA_03576 0.58 -1.3 361,642 - BACOVA_03576 0.58 -1.1 361,682 + BACOVA_03576 0.60 +1.0 361,683 - BACOVA_03576 0.61 -0.7 361,703 + BACOVA_03576 0.62 -1.9 361,704 - BACOVA_03576 0.62 +0.2 361,704 - BACOVA_03576 0.62 -0.5 361,755 - BACOVA_03576 0.65 -1.9 361,787 + BACOVA_03576 0.67 +0.3 361,837 + BACOVA_03576 0.70 -1.3 361,838 - BACOVA_03576 0.70 -0.3 361,838 - BACOVA_03576 0.70 -0.3 361,839 + BACOVA_03576 0.70 +0.5 361,840 - BACOVA_03576 0.70 -0.8 361,862 - BACOVA_03576 0.72 -0.5 361,868 - BACOVA_03576 0.72 -0.5 361,899 - BACOVA_03576 0.74 +0.6 361,899 - BACOVA_03576 0.74 -0.5 361,921 - BACOVA_03576 0.75 +1.4 361,922 + BACOVA_03576 0.75 -0.1 361,928 + BACOVA_03576 0.76 -0.1 361,928 + BACOVA_03576 0.76 -0.3 361,929 - BACOVA_03576 0.76 -0.2 361,929 - BACOVA_03576 0.76 -1.1 361,929 - BACOVA_03576 0.76 -0.9 361,935 - BACOVA_03576 0.76 +0.9 361,951 + BACOVA_03576 0.77 +0.4 361,951 + BACOVA_03576 0.77 +0.9 361,952 - BACOVA_03576 0.77 +0.1 361,978 - BACOVA_03576 0.79 -0.8 361,979 + BACOVA_03576 0.79 -0.2 361,979 + BACOVA_03576 0.79 +0.3 361,979 + BACOVA_03576 0.79 -2.1 361,980 - BACOVA_03576 0.79 +1.1 361,980 - BACOVA_03576 0.79 +1.3 362,009 - BACOVA_03576 0.81 +2.9 362,062 - BACOVA_03576 0.84 +0.3 362,109 - BACOVA_03576 0.87 -1.2 362,119 + BACOVA_03576 0.87 -0.7 362,190 + +0.4 362,191 - +0.6 362,224 + -0.4 362,244 - +1.6 362,244 - -1.1 362,289 + +0.4 362,289 + +0.4 362,290 - +0.3 362,357 + -1.8 362,358 - +0.1 362,358 - -0.6 362,362 + +0.4 362,372 + -0.5 362,373 - -1.7 362,421 + -0.1 362,423 + -0.8 362,428 + -0.6 362,428 + +0.0 362,429 - +0.0 362,565 + -0.4 362,721 - BACOVA_03577 0.15 -1.3 362,758 - BACOVA_03577 0.17 +0.3 362,774 - BACOVA_03577 0.17 -0.6 362,774 - BACOVA_03577 0.17 -1.0 362,774 - BACOVA_03577 0.17 -1.1 362,774 - BACOVA_03577 0.17 -0.8 362,786 - BACOVA_03577 0.18 +0.5 362,786 - BACOVA_03577 0.18 +0.6 362,807 - BACOVA_03577 0.19 -0.5 362,870 + BACOVA_03577 0.21 -0.5 362,943 - BACOVA_03577 0.24 -0.2 362,943 - BACOVA_03577 0.24 -1.3 362,945 + BACOVA_03577 0.24 +0.1 362,946 - BACOVA_03577 0.24 -0.4 362,950 - BACOVA_03577 0.24 -1.9 362,978 + BACOVA_03577 0.26 +0.4 362,979 - BACOVA_03577 0.26 -2.0 362,979 - BACOVA_03577 0.26 -0.3 362,982 - BACOVA_03577 0.26 +0.3 363,018 + BACOVA_03577 0.27 +0.6 363,019 - BACOVA_03577 0.27 -0.4 363,019 - BACOVA_03577 0.27 -0.7 363,044 + BACOVA_03577 0.28 +1.2 363,080 - BACOVA_03577 0.30 -1.4 363,107 + BACOVA_03577 0.31 +0.8 363,107 + BACOVA_03577 0.31 +0.3 363,114 + BACOVA_03577 0.31 +1.3 363,114 + BACOVA_03577 0.31 +1.1 363,114 + BACOVA_03577 0.31 -1.8 363,115 - BACOVA_03577 0.31 +1.6 363,152 + BACOVA_03577 0.33 -0.7 363,152 + BACOVA_03577 0.33 -0.4 363,152 + BACOVA_03577 0.33 -1.2 363,154 + BACOVA_03577 0.33 -1.5 363,154 + BACOVA_03577 0.33 -0.4 363,168 + BACOVA_03577 0.33 -0.4 363,179 + BACOVA_03577 0.34 -0.9 363,180 - BACOVA_03577 0.34 -1.9 363,212 + BACOVA_03577 0.35 +0.6 363,213 - BACOVA_03577 0.35 -1.7 363,216 - BACOVA_03577 0.35 +0.9 363,234 - BACOVA_03577 0.36 -0.6 363,313 + BACOVA_03577 0.39 -0.2 363,314 - BACOVA_03577 0.39 +0.5 363,314 - BACOVA_03577 0.39 -0.7 363,314 - BACOVA_03577 0.39 +0.5
Or see this region's nucleotide sequence