Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03502 and BACOVA_03503 are separated by 144 nucleotides BACOVA_03503 and BACOVA_03504 are separated by 33 nucleotides
BACOVA_03502: BACOVA_03502 - glycosyl hydrolase family 20, catalytic domain protein, at 259,976 to 261,991
_03502
BACOVA_03503: BACOVA_03503 - DNA repair protein RadC, at 262,136 to 262,831
_03503
BACOVA_03504: BACOVA_03504 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 262,865 to 266,800
_03504
Position (kb) 262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.166 kb on + strand, within BACOVA_03502 at 261.166 kb on + strand, within BACOVA_03502 at 261.167 kb on - strand, within BACOVA_03502 at 261.171 kb on + strand, within BACOVA_03502 at 261.172 kb on - strand, within BACOVA_03502 at 261.254 kb on - strand, within BACOVA_03502 at 261.310 kb on - strand, within BACOVA_03502 at 261.310 kb on - strand, within BACOVA_03502 at 261.370 kb on - strand, within BACOVA_03502 at 261.412 kb on + strand, within BACOVA_03502 at 261.425 kb on + strand, within BACOVA_03502 at 261.447 kb on + strand, within BACOVA_03502 at 261.465 kb on - strand, within BACOVA_03502 at 261.480 kb on + strand, within BACOVA_03502 at 261.534 kb on + strand, within BACOVA_03502 at 261.535 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.621 kb on - strand, within BACOVA_03502 at 261.650 kb on + strand, within BACOVA_03502 at 261.650 kb on + strand, within BACOVA_03502 at 261.651 kb on - strand, within BACOVA_03502 at 261.675 kb on + strand, within BACOVA_03502 at 261.720 kb on + strand, within BACOVA_03502 at 261.721 kb on - strand, within BACOVA_03502 at 261.725 kb on - strand, within BACOVA_03502 at 261.725 kb on - strand, within BACOVA_03502 at 261.759 kb on + strand, within BACOVA_03502 at 261.776 kb on - strand, within BACOVA_03502 at 261.863 kb on + strand at 261.899 kb on + strand at 261.900 kb on - strand at 261.900 kb on - strand at 261.900 kb on - strand at 261.936 kb on + strand at 261.936 kb on + strand at 261.938 kb on + strand at 261.938 kb on + strand at 261.950 kb on + strand at 261.954 kb on - strand at 261.956 kb on + strand at 261.956 kb on + strand at 261.956 kb on + strand at 261.957 kb on - strand at 261.960 kb on - strand at 261.960 kb on - strand at 261.960 kb on - strand at 261.968 kb on + strand at 261.999 kb on - strand at 262.007 kb on - strand at 262.007 kb on - strand at 262.008 kb on + strand at 262.009 kb on - strand at 262.023 kb on - strand at 262.049 kb on - strand at 262.060 kb on - strand at 262.071 kb on + strand at 262.072 kb on - strand at 262.072 kb on - strand at 262.073 kb on + strand at 262.073 kb on + strand at 262.074 kb on - strand at 262.074 kb on - strand at 262.074 kb on - strand at 262.100 kb on - strand at 262.100 kb on - strand at 262.101 kb on + strand at 262.101 kb on + strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.104 kb on - strand at 262.109 kb on + strand at 262.122 kb on + strand at 262.240 kb on - strand, within BACOVA_03503 at 262.247 kb on - strand, within BACOVA_03503 at 262.318 kb on + strand, within BACOVA_03503 at 262.319 kb on - strand, within BACOVA_03503 at 262.358 kb on + strand, within BACOVA_03503 at 262.358 kb on + strand, within BACOVA_03503 at 262.376 kb on - strand, within BACOVA_03503 at 262.396 kb on + strand, within BACOVA_03503 at 262.396 kb on + strand, within BACOVA_03503 at 262.397 kb on - strand, within BACOVA_03503 at 262.420 kb on - strand, within BACOVA_03503 at 262.480 kb on + strand, within BACOVA_03503 at 262.481 kb on - strand, within BACOVA_03503 at 262.481 kb on - strand, within BACOVA_03503 at 262.484 kb on + strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.485 kb on - strand, within BACOVA_03503 at 262.543 kb on - strand, within BACOVA_03503 at 262.575 kb on + strand, within BACOVA_03503 at 262.575 kb on + strand, within BACOVA_03503 at 262.576 kb on - strand, within BACOVA_03503 at 262.579 kb on + strand, within BACOVA_03503 at 262.579 kb on + strand, within BACOVA_03503 at 262.581 kb on + strand, within BACOVA_03503 at 262.581 kb on + strand, within BACOVA_03503 at 262.582 kb on - strand, within BACOVA_03503 at 262.585 kb on + strand, within BACOVA_03503 at 262.610 kb on - strand, within BACOVA_03503 at 262.693 kb on + strand, within BACOVA_03503 at 262.732 kb on + strand, within BACOVA_03503 at 262.733 kb on - strand, within BACOVA_03503 at 262.829 kb on + strand at 262.833 kb on + strand at 262.834 kb on - strand at 262.834 kb on - strand at 262.836 kb on + strand at 262.836 kb on + strand at 262.839 kb on + strand at 262.840 kb on - strand at 262.840 kb on - strand at 262.861 kb on + strand at 262.870 kb on + strand at 262.921 kb on - strand at 262.936 kb on + strand at 262.949 kb on + strand at 262.949 kb on + strand at 262.949 kb on + strand at 262.950 kb on - strand at 262.965 kb on - strand at 263.007 kb on - strand at 263.044 kb on + strand at 263.045 kb on - strand at 263.046 kb on + strand at 263.072 kb on - strand at 263.125 kb on + strand at 263.135 kb on - strand at 263.138 kb on + strand at 263.139 kb on - strand at 263.215 kb on + strand at 263.216 kb on - strand at 263.243 kb on + strand at 263.243 kb on + strand at 263.243 kb on + strand at 263.244 kb on - strand at 263.244 kb on - strand at 263.253 kb on + strand at 263.281 kb on - strand, within BACOVA_03504 at 263.295 kb on - strand, within BACOVA_03504 at 263.302 kb on + strand, within BACOVA_03504 at 263.315 kb on + strand, within BACOVA_03504 at 263.357 kb on - strand, within BACOVA_03504 at 263.414 kb on - strand, within BACOVA_03504 at 263.438 kb on + strand, within BACOVA_03504 at 263.457 kb on + strand, within BACOVA_03504 at 263.492 kb on + strand, within BACOVA_03504 at 263.492 kb on + strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.493 kb on - strand, within BACOVA_03504 at 263.495 kb on - strand, within BACOVA_03504 at 263.549 kb on + strand, within BACOVA_03504 at 263.549 kb on + strand, within BACOVA_03504 at 263.549 kb on + strand, within BACOVA_03504 at 263.553 kb on + strand, within BACOVA_03504 at 263.553 kb on + strand, within BACOVA_03504 at 263.553 kb on + strand, within BACOVA_03504 at 263.554 kb on - strand, within BACOVA_03504 at 263.554 kb on - strand, within BACOVA_03504 at 263.606 kb on - strand, within BACOVA_03504 at 263.634 kb on + strand, within BACOVA_03504 at 263.684 kb on + strand, within BACOVA_03504 at 263.685 kb on - strand, within BACOVA_03504 at 263.685 kb on - strand, within BACOVA_03504 at 263.818 kb on + strand, within BACOVA_03504
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 261,166 + BACOVA_03502 0.59 +0.7 261,166 + BACOVA_03502 0.59 -1.5 261,167 - BACOVA_03502 0.59 -2.3 261,171 + BACOVA_03502 0.59 +0.2 261,172 - BACOVA_03502 0.59 +0.1 261,254 - BACOVA_03502 0.63 -0.6 261,310 - BACOVA_03502 0.66 -0.3 261,310 - BACOVA_03502 0.66 -0.3 261,370 - BACOVA_03502 0.69 +0.3 261,412 + BACOVA_03502 0.71 +0.1 261,425 + BACOVA_03502 0.72 -1.8 261,447 + BACOVA_03502 0.73 +1.0 261,465 - BACOVA_03502 0.74 -1.5 261,480 + BACOVA_03502 0.75 +0.9 261,534 + BACOVA_03502 0.77 +0.0 261,535 - BACOVA_03502 0.77 +0.2 261,621 - BACOVA_03502 0.82 -0.4 261,621 - BACOVA_03502 0.82 -0.1 261,621 - BACOVA_03502 0.82 -1.7 261,650 + BACOVA_03502 0.83 +0.2 261,650 + BACOVA_03502 0.83 -0.4 261,651 - BACOVA_03502 0.83 +0.3 261,675 + BACOVA_03502 0.84 -0.7 261,720 + BACOVA_03502 0.87 -1.1 261,721 - BACOVA_03502 0.87 -0.4 261,725 - BACOVA_03502 0.87 +1.7 261,725 - BACOVA_03502 0.87 -0.8 261,759 + BACOVA_03502 0.88 -0.2 261,776 - BACOVA_03502 0.89 -0.4 261,863 + +0.1 261,899 + -0.6 261,900 - -1.2 261,900 - +0.3 261,900 - -0.5 261,936 + -0.4 261,936 + -2.3 261,938 + +1.1 261,938 + +0.6 261,950 + -1.1 261,954 - -1.2 261,956 + -1.7 261,956 + +1.6 261,956 + +0.4 261,957 - +0.1 261,960 - +0.8 261,960 - -0.5 261,960 - +0.1 261,968 + +0.5 261,999 - +1.0 262,007 - -2.7 262,007 - -0.5 262,008 + +0.4 262,009 - -0.7 262,023 - -2.0 262,049 - +0.7 262,060 - +1.0 262,071 + +1.6 262,072 - +0.6 262,072 - +0.0 262,073 + -1.6 262,073 + -0.9 262,074 - +0.6 262,074 - -0.1 262,074 - -0.2 262,100 - -0.7 262,100 - +0.0 262,101 + +0.4 262,101 + +0.6 262,104 - +0.4 262,104 - -0.7 262,104 - -0.9 262,104 - +0.6 262,104 - -1.4 262,104 - +0.1 262,109 + -1.5 262,122 + -0.3 262,240 - BACOVA_03503 0.15 -0.1 262,247 - BACOVA_03503 0.16 +1.1 262,318 + BACOVA_03503 0.26 +1.3 262,319 - BACOVA_03503 0.26 -1.5 262,358 + BACOVA_03503 0.32 +0.3 262,358 + BACOVA_03503 0.32 +0.7 262,376 - BACOVA_03503 0.34 +1.8 262,396 + BACOVA_03503 0.37 -2.8 262,396 + BACOVA_03503 0.37 +0.7 262,397 - BACOVA_03503 0.38 -1.3 262,420 - BACOVA_03503 0.41 +0.4 262,480 + BACOVA_03503 0.49 +0.2 262,481 - BACOVA_03503 0.50 -0.6 262,481 - BACOVA_03503 0.50 -0.4 262,484 + BACOVA_03503 0.50 -0.3 262,485 - BACOVA_03503 0.50 +0.0 262,485 - BACOVA_03503 0.50 -0.0 262,485 - BACOVA_03503 0.50 +0.2 262,485 - BACOVA_03503 0.50 -0.6 262,543 - BACOVA_03503 0.58 -0.6 262,575 + BACOVA_03503 0.63 +0.4 262,575 + BACOVA_03503 0.63 -0.6 262,576 - BACOVA_03503 0.63 +0.9 262,579 + BACOVA_03503 0.64 -1.8 262,579 + BACOVA_03503 0.64 -1.3 262,581 + BACOVA_03503 0.64 +0.4 262,581 + BACOVA_03503 0.64 +0.3 262,582 - BACOVA_03503 0.64 +1.1 262,585 + BACOVA_03503 0.65 -0.7 262,610 - BACOVA_03503 0.68 +0.6 262,693 + BACOVA_03503 0.80 +0.3 262,732 + BACOVA_03503 0.86 +0.5 262,733 - BACOVA_03503 0.86 -0.5 262,829 + +0.8 262,833 + -1.6 262,834 - -0.5 262,834 - -0.4 262,836 + -0.7 262,836 + -0.4 262,839 + -1.3 262,840 - -1.1 262,840 - -2.1 262,861 + +0.3 262,870 + +1.3 262,921 - +0.0 262,936 + +0.4 262,949 + +0.1 262,949 + -1.0 262,949 + -0.2 262,950 - +0.3 262,965 - -1.3 263,007 - +0.8 263,044 + -0.5 263,045 - -1.7 263,046 + +1.3 263,072 - +1.0 263,125 + -0.2 263,135 - -0.4 263,138 + +0.0 263,139 - +0.6 263,215 + +0.6 263,216 - -0.5 263,243 + -1.8 263,243 + -0.3 263,243 + -1.0 263,244 - +1.0 263,244 - -0.6 263,253 + +0.8 263,281 - BACOVA_03504 0.11 +2.0 263,295 - BACOVA_03504 0.11 +0.8 263,302 + BACOVA_03504 0.11 +0.2 263,315 + BACOVA_03504 0.11 -0.1 263,357 - BACOVA_03504 0.12 +0.5 263,414 - BACOVA_03504 0.14 +0.9 263,438 + BACOVA_03504 0.15 +0.9 263,457 + BACOVA_03504 0.15 -0.3 263,492 + BACOVA_03504 0.16 +0.5 263,492 + BACOVA_03504 0.16 +0.2 263,493 - BACOVA_03504 0.16 -1.1 263,493 - BACOVA_03504 0.16 -1.0 263,493 - BACOVA_03504 0.16 -1.7 263,493 - BACOVA_03504 0.16 +0.8 263,495 - BACOVA_03504 0.16 +1.3 263,549 + BACOVA_03504 0.17 +0.4 263,549 + BACOVA_03504 0.17 -0.8 263,549 + BACOVA_03504 0.17 -0.8 263,553 + BACOVA_03504 0.17 +0.8 263,553 + BACOVA_03504 0.17 +0.6 263,553 + BACOVA_03504 0.17 +0.1 263,554 - BACOVA_03504 0.18 +0.1 263,554 - BACOVA_03504 0.18 -0.7 263,606 - BACOVA_03504 0.19 -1.8 263,634 + BACOVA_03504 0.20 -0.3 263,684 + BACOVA_03504 0.21 -0.8 263,685 - BACOVA_03504 0.21 -2.4 263,685 - BACOVA_03504 0.21 +1.3 263,818 + BACOVA_03504 0.24 -0.8
Or see this region's nucleotide sequence