Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03419 and BACOVA_03420 are separated by 200 nucleotides BACOVA_03420 and BACOVA_03421 are separated by 70 nucleotides BACOVA_03421 and BACOVA_03422 are separated by 25 nucleotides
BACOVA_03419: BACOVA_03419 - glycosyl hydrolase family 3 C-terminal domain protein, at 130,314 to 132,899
_03419
BACOVA_03420: BACOVA_03420 - hypothetical protein, at 133,100 to 133,261
_03420
BACOVA_03421: BACOVA_03421 - glycosyl hydrolase, family 43, at 133,332 to 135,059
_03421
BACOVA_03422: BACOVA_03422 - glycosyl hydrolase, family 31, at 135,085 to 137,529
_03422
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 132.366 kb on - strand, within BACOVA_03419 at 132.366 kb on - strand, within BACOVA_03419 at 132.396 kb on + strand, within BACOVA_03419 at 132.397 kb on - strand, within BACOVA_03419 at 132.398 kb on + strand, within BACOVA_03419 at 132.398 kb on + strand, within BACOVA_03419 at 132.429 kb on + strand, within BACOVA_03419 at 132.466 kb on - strand, within BACOVA_03419 at 132.483 kb on - strand, within BACOVA_03419 at 132.483 kb on - strand, within BACOVA_03419 at 132.483 kb on - strand, within BACOVA_03419 at 132.487 kb on - strand, within BACOVA_03419 at 132.492 kb on + strand, within BACOVA_03419 at 132.493 kb on - strand, within BACOVA_03419 at 132.494 kb on + strand, within BACOVA_03419 at 132.538 kb on - strand, within BACOVA_03419 at 132.601 kb on + strand, within BACOVA_03419 at 132.611 kb on + strand, within BACOVA_03419 at 132.623 kb on + strand, within BACOVA_03419 at 132.624 kb on - strand, within BACOVA_03419 at 132.701 kb on + strand at 132.702 kb on - strand at 132.702 kb on - strand at 132.729 kb on - strand at 132.755 kb on - strand at 132.759 kb on - strand at 132.796 kb on + strand at 132.832 kb on - strand at 132.832 kb on - strand at 132.844 kb on - strand at 132.844 kb on - strand at 132.866 kb on + strand at 132.867 kb on - strand at 132.933 kb on - strand at 132.948 kb on - strand at 132.951 kb on + strand at 133.010 kb on + strand at 133.011 kb on - strand at 133.033 kb on - strand at 133.033 kb on - strand at 133.054 kb on + strand at 133.055 kb on - strand at 133.128 kb on + strand, within BACOVA_03420 at 133.128 kb on + strand, within BACOVA_03420 at 133.129 kb on - strand, within BACOVA_03420 at 133.129 kb on - strand, within BACOVA_03420 at 133.180 kb on - strand, within BACOVA_03420 at 133.200 kb on + strand, within BACOVA_03420 at 133.200 kb on + strand, within BACOVA_03420 at 133.200 kb on + strand, within BACOVA_03420 at 133.220 kb on - strand, within BACOVA_03420 at 133.228 kb on + strand, within BACOVA_03420 at 133.230 kb on + strand, within BACOVA_03420 at 133.230 kb on + strand, within BACOVA_03420 at 133.231 kb on - strand, within BACOVA_03420 at 133.231 kb on - strand, within BACOVA_03420 at 133.231 kb on - strand, within BACOVA_03420 at 133.251 kb on + strand at 133.255 kb on + strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.256 kb on - strand at 133.257 kb on + strand at 133.262 kb on + strand at 133.263 kb on - strand at 133.263 kb on - strand at 133.292 kb on - strand at 133.309 kb on + strand at 133.332 kb on - strand at 133.385 kb on - strand at 133.388 kb on + strand at 133.388 kb on + strand at 133.392 kb on - strand at 133.406 kb on + strand at 133.427 kb on + strand at 133.463 kb on + strand at 133.484 kb on + strand at 133.485 kb on - strand at 133.489 kb on - strand at 133.521 kb on + strand, within BACOVA_03421 at 133.522 kb on - strand, within BACOVA_03421 at 133.522 kb on - strand, within BACOVA_03421 at 133.545 kb on + strand, within BACOVA_03421 at 133.574 kb on + strand, within BACOVA_03421 at 133.581 kb on + strand, within BACOVA_03421 at 133.582 kb on - strand, within BACOVA_03421 at 133.585 kb on - strand, within BACOVA_03421 at 133.625 kb on + strand, within BACOVA_03421 at 133.693 kb on + strand, within BACOVA_03421 at 133.726 kb on + strand, within BACOVA_03421 at 133.726 kb on + strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.727 kb on - strand, within BACOVA_03421 at 133.746 kb on + strand, within BACOVA_03421 at 133.746 kb on + strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.747 kb on - strand, within BACOVA_03421 at 133.749 kb on - strand, within BACOVA_03421 at 133.764 kb on - strand, within BACOVA_03421 at 133.771 kb on - strand, within BACOVA_03421 at 133.772 kb on + strand, within BACOVA_03421 at 133.778 kb on - strand, within BACOVA_03421 at 133.914 kb on + strand, within BACOVA_03421 at 133.915 kb on - strand, within BACOVA_03421 at 133.915 kb on - strand, within BACOVA_03421 at 133.925 kb on + strand, within BACOVA_03421 at 133.925 kb on + strand, within BACOVA_03421 at 133.925 kb on + strand, within BACOVA_03421 at 133.926 kb on - strand, within BACOVA_03421 at 133.989 kb on + strand, within BACOVA_03421 at 133.989 kb on + strand, within BACOVA_03421 at 133.990 kb on - strand, within BACOVA_03421 at 133.990 kb on - strand, within BACOVA_03421 at 134.056 kb on + strand, within BACOVA_03421 at 134.057 kb on - strand, within BACOVA_03421 at 134.057 kb on - strand, within BACOVA_03421 at 134.090 kb on + strand, within BACOVA_03421 at 134.094 kb on + strand, within BACOVA_03421 at 134.116 kb on - strand, within BACOVA_03421 at 134.119 kb on + strand, within BACOVA_03421 at 134.120 kb on - strand, within BACOVA_03421 at 134.194 kb on - strand, within BACOVA_03421 at 134.208 kb on - strand, within BACOVA_03421 at 134.260 kb on + strand, within BACOVA_03421 at 134.285 kb on - strand, within BACOVA_03421 at 134.310 kb on + strand, within BACOVA_03421 at 134.318 kb on - strand, within BACOVA_03421 at 134.330 kb on - strand, within BACOVA_03421 at 134.330 kb on - strand, within BACOVA_03421 at 134.542 kb on + strand, within BACOVA_03421 at 134.549 kb on + strand, within BACOVA_03421 at 134.550 kb on - strand, within BACOVA_03421 at 134.592 kb on - strand, within BACOVA_03421 at 134.624 kb on + strand, within BACOVA_03421 at 134.633 kb on + strand, within BACOVA_03421 at 134.633 kb on + strand, within BACOVA_03421 at 134.634 kb on - strand, within BACOVA_03421 at 134.658 kb on - strand, within BACOVA_03421 at 134.658 kb on - strand, within BACOVA_03421 at 134.668 kb on - strand, within BACOVA_03421 at 134.682 kb on - strand, within BACOVA_03421 at 134.746 kb on + strand, within BACOVA_03421 at 134.747 kb on - strand, within BACOVA_03421 at 134.754 kb on + strand, within BACOVA_03421 at 134.755 kb on - strand, within BACOVA_03421 at 134.769 kb on + strand, within BACOVA_03421 at 134.809 kb on - strand, within BACOVA_03421 at 134.870 kb on - strand, within BACOVA_03421 at 134.920 kb on - strand at 134.993 kb on + strand at 134.993 kb on + strand at 135.037 kb on - strand at 135.057 kb on + strand at 135.057 kb on + strand at 135.057 kb on + strand at 135.080 kb on + strand at 135.081 kb on - strand at 135.085 kb on - strand at 135.085 kb on - strand at 135.101 kb on + strand at 135.102 kb on - strand at 135.113 kb on + strand at 135.113 kb on + strand at 135.113 kb on + strand at 135.114 kb on - strand at 135.114 kb on - strand at 135.114 kb on - strand at 135.120 kb on - strand at 135.120 kb on - strand at 135.136 kb on - strand at 135.136 kb on - strand at 135.188 kb on + strand at 135.203 kb on + strand at 135.203 kb on + strand at 135.239 kb on + strand at 135.240 kb on - strand at 135.266 kb on - strand at 135.326 kb on + strand at 135.326 kb on + strand at 135.327 kb on - strand at 135.327 kb on - strand at 135.334 kb on - strand, within BACOVA_03422 at 135.401 kb on - strand, within BACOVA_03422 at 135.426 kb on - strand, within BACOVA_03422 at 135.494 kb on - strand, within BACOVA_03422 at 135.505 kb on - strand, within BACOVA_03422 at 135.525 kb on + strand, within BACOVA_03422 at 135.525 kb on + strand, within BACOVA_03422 at 135.526 kb on - strand, within BACOVA_03422 at 135.640 kb on + strand, within BACOVA_03422 at 135.641 kb on - strand, within BACOVA_03422 at 135.661 kb on + strand, within BACOVA_03422 at 135.662 kb on - strand, within BACOVA_03422 at 135.662 kb on - strand, within BACOVA_03422 at 135.728 kb on + strand, within BACOVA_03422 at 135.729 kb on - strand, within BACOVA_03422 at 135.734 kb on - strand, within BACOVA_03422 at 135.736 kb on + strand, within BACOVA_03422 at 135.736 kb on + strand, within BACOVA_03422 at 135.745 kb on + strand, within BACOVA_03422 at 135.767 kb on + strand, within BACOVA_03422 at 135.767 kb on + strand, within BACOVA_03422 at 135.780 kb on - strand, within BACOVA_03422 at 135.823 kb on + strand, within BACOVA_03422 at 135.824 kb on - strand, within BACOVA_03422 at 135.830 kb on - strand, within BACOVA_03422 at 135.840 kb on + strand, within BACOVA_03422 at 135.840 kb on + strand, within BACOVA_03422 at 135.948 kb on + strand, within BACOVA_03422 at 135.949 kb on - strand, within BACOVA_03422 at 135.949 kb on - strand, within BACOVA_03422 at 135.949 kb on - strand, within BACOVA_03422 at 135.952 kb on + strand, within BACOVA_03422 at 135.953 kb on - strand, within BACOVA_03422 at 135.953 kb on - strand, within BACOVA_03422 at 135.993 kb on + strand, within BACOVA_03422 at 135.993 kb on + strand, within BACOVA_03422 at 136.044 kb on + strand, within BACOVA_03422 at 136.045 kb on - strand, within BACOVA_03422 at 136.047 kb on - strand, within BACOVA_03422 at 136.047 kb on - strand, within BACOVA_03422
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 132,366 - BACOVA_03419 0.79 +1.3 132,366 - BACOVA_03419 0.79 -1.9 132,396 + BACOVA_03419 0.81 -0.6 132,397 - BACOVA_03419 0.81 -2.5 132,398 + BACOVA_03419 0.81 -1.3 132,398 + BACOVA_03419 0.81 -0.1 132,429 + BACOVA_03419 0.82 -1.2 132,466 - BACOVA_03419 0.83 +1.1 132,483 - BACOVA_03419 0.84 +0.3 132,483 - BACOVA_03419 0.84 -2.1 132,483 - BACOVA_03419 0.84 -0.4 132,487 - BACOVA_03419 0.84 -0.2 132,492 + BACOVA_03419 0.84 -0.7 132,493 - BACOVA_03419 0.84 +0.0 132,494 + BACOVA_03419 0.84 -1.8 132,538 - BACOVA_03419 0.86 +0.1 132,601 + BACOVA_03419 0.88 -1.2 132,611 + BACOVA_03419 0.89 -0.8 132,623 + BACOVA_03419 0.89 -1.3 132,624 - BACOVA_03419 0.89 -0.6 132,701 + -0.8 132,702 - +1.0 132,702 - -0.3 132,729 - -1.5 132,755 - -0.8 132,759 - -1.1 132,796 + +0.4 132,832 - -0.6 132,832 - +0.0 132,844 - -1.0 132,844 - -1.2 132,866 + -0.4 132,867 - -1.4 132,933 - -0.2 132,948 - +0.0 132,951 + -2.5 133,010 + -1.2 133,011 - +0.2 133,033 - -2.0 133,033 - +1.0 133,054 + -0.2 133,055 - -0.3 133,128 + BACOVA_03420 0.17 -0.1 133,128 + BACOVA_03420 0.17 -0.4 133,129 - BACOVA_03420 0.18 -1.4 133,129 - BACOVA_03420 0.18 -1.4 133,180 - BACOVA_03420 0.49 +0.7 133,200 + BACOVA_03420 0.62 -0.1 133,200 + BACOVA_03420 0.62 -0.9 133,200 + BACOVA_03420 0.62 -1.8 133,220 - BACOVA_03420 0.74 -1.7 133,228 + BACOVA_03420 0.79 +0.8 133,230 + BACOVA_03420 0.80 +1.0 133,230 + BACOVA_03420 0.80 -1.1 133,231 - BACOVA_03420 0.81 -0.9 133,231 - BACOVA_03420 0.81 -0.3 133,231 - BACOVA_03420 0.81 -0.7 133,251 + +1.6 133,255 + -1.1 133,256 - -0.6 133,256 - +1.0 133,256 - -0.5 133,256 - +0.6 133,256 - +0.3 133,257 + +0.3 133,262 + +0.6 133,263 - +1.6 133,263 - -1.3 133,292 - -0.5 133,309 + -1.5 133,332 - -1.0 133,385 - -0.1 133,388 + -0.9 133,388 + -0.3 133,392 - -1.3 133,406 + +1.5 133,427 + -2.0 133,463 + -1.4 133,484 + +2.6 133,485 - -0.4 133,489 - -0.1 133,521 + BACOVA_03421 0.11 -0.4 133,522 - BACOVA_03421 0.11 -0.4 133,522 - BACOVA_03421 0.11 -0.9 133,545 + BACOVA_03421 0.12 -0.3 133,574 + BACOVA_03421 0.14 -0.7 133,581 + BACOVA_03421 0.14 -0.3 133,582 - BACOVA_03421 0.14 -1.4 133,585 - BACOVA_03421 0.15 +0.1 133,625 + BACOVA_03421 0.17 -0.1 133,693 + BACOVA_03421 0.21 -1.1 133,726 + BACOVA_03421 0.23 +0.0 133,726 + BACOVA_03421 0.23 -1.3 133,727 - BACOVA_03421 0.23 +0.3 133,727 - BACOVA_03421 0.23 -0.9 133,727 - BACOVA_03421 0.23 -0.8 133,727 - BACOVA_03421 0.23 -0.2 133,727 - BACOVA_03421 0.23 +0.5 133,727 - BACOVA_03421 0.23 +3.2 133,746 + BACOVA_03421 0.24 -0.5 133,746 + BACOVA_03421 0.24 -0.3 133,747 - BACOVA_03421 0.24 -0.1 133,747 - BACOVA_03421 0.24 -0.7 133,747 - BACOVA_03421 0.24 -1.3 133,747 - BACOVA_03421 0.24 -0.2 133,747 - BACOVA_03421 0.24 +2.3 133,749 - BACOVA_03421 0.24 +1.3 133,764 - BACOVA_03421 0.25 +0.9 133,771 - BACOVA_03421 0.25 +0.1 133,772 + BACOVA_03421 0.25 -0.4 133,778 - BACOVA_03421 0.26 -0.5 133,914 + BACOVA_03421 0.34 -0.8 133,915 - BACOVA_03421 0.34 -0.3 133,915 - BACOVA_03421 0.34 +0.0 133,925 + BACOVA_03421 0.34 -2.8 133,925 + BACOVA_03421 0.34 +0.0 133,925 + BACOVA_03421 0.34 +0.4 133,926 - BACOVA_03421 0.34 -0.9 133,989 + BACOVA_03421 0.38 -0.6 133,989 + BACOVA_03421 0.38 -1.7 133,990 - BACOVA_03421 0.38 -1.2 133,990 - BACOVA_03421 0.38 -0.6 134,056 + BACOVA_03421 0.42 +0.1 134,057 - BACOVA_03421 0.42 -1.4 134,057 - BACOVA_03421 0.42 -0.6 134,090 + BACOVA_03421 0.44 +0.1 134,094 + BACOVA_03421 0.44 -3.0 134,116 - BACOVA_03421 0.45 +1.8 134,119 + BACOVA_03421 0.46 +1.0 134,120 - BACOVA_03421 0.46 -0.5 134,194 - BACOVA_03421 0.50 +0.0 134,208 - BACOVA_03421 0.51 +0.0 134,260 + BACOVA_03421 0.54 +0.2 134,285 - BACOVA_03421 0.55 -0.2 134,310 + BACOVA_03421 0.57 +0.0 134,318 - BACOVA_03421 0.57 -2.1 134,330 - BACOVA_03421 0.58 -0.9 134,330 - BACOVA_03421 0.58 -0.1 134,542 + BACOVA_03421 0.70 -0.7 134,549 + BACOVA_03421 0.70 -1.4 134,550 - BACOVA_03421 0.70 -0.7 134,592 - BACOVA_03421 0.73 -3.1 134,624 + BACOVA_03421 0.75 +1.3 134,633 + BACOVA_03421 0.75 +0.3 134,633 + BACOVA_03421 0.75 -0.5 134,634 - BACOVA_03421 0.75 +0.3 134,658 - BACOVA_03421 0.77 -0.2 134,658 - BACOVA_03421 0.77 +0.1 134,668 - BACOVA_03421 0.77 +1.0 134,682 - BACOVA_03421 0.78 -1.4 134,746 + BACOVA_03421 0.82 -0.5 134,747 - BACOVA_03421 0.82 -1.1 134,754 + BACOVA_03421 0.82 +0.3 134,755 - BACOVA_03421 0.82 -0.6 134,769 + BACOVA_03421 0.83 -0.3 134,809 - BACOVA_03421 0.85 +1.3 134,870 - BACOVA_03421 0.89 +0.2 134,920 - -2.0 134,993 + +1.0 134,993 + -0.8 135,037 - -1.2 135,057 + +0.8 135,057 + -0.7 135,057 + -0.1 135,080 + -0.1 135,081 - -0.3 135,085 - -1.3 135,085 - +0.3 135,101 + -1.9 135,102 - +0.0 135,113 + +2.0 135,113 + +0.6 135,113 + -0.3 135,114 - -1.7 135,114 - -0.3 135,114 - +0.0 135,120 - +0.9 135,120 - +0.2 135,136 - +1.4 135,136 - +0.0 135,188 + -2.3 135,203 + -0.2 135,203 + +1.6 135,239 + +1.3 135,240 - -1.5 135,266 - -0.8 135,326 + -1.1 135,326 + -1.0 135,327 - +0.1 135,327 - -1.9 135,334 - BACOVA_03422 0.10 -0.2 135,401 - BACOVA_03422 0.13 +1.0 135,426 - BACOVA_03422 0.14 -2.1 135,494 - BACOVA_03422 0.17 -0.3 135,505 - BACOVA_03422 0.17 -0.5 135,525 + BACOVA_03422 0.18 +0.5 135,525 + BACOVA_03422 0.18 -1.4 135,526 - BACOVA_03422 0.18 -0.8 135,640 + BACOVA_03422 0.23 +0.1 135,641 - BACOVA_03422 0.23 +0.6 135,661 + BACOVA_03422 0.24 -1.0 135,662 - BACOVA_03422 0.24 -2.8 135,662 - BACOVA_03422 0.24 -0.2 135,728 + BACOVA_03422 0.26 -1.1 135,729 - BACOVA_03422 0.26 +0.3 135,734 - BACOVA_03422 0.27 -0.3 135,736 + BACOVA_03422 0.27 +0.3 135,736 + BACOVA_03422 0.27 +1.1 135,745 + BACOVA_03422 0.27 +0.5 135,767 + BACOVA_03422 0.28 -2.3 135,767 + BACOVA_03422 0.28 -1.6 135,780 - BACOVA_03422 0.28 -1.7 135,823 + BACOVA_03422 0.30 -1.4 135,824 - BACOVA_03422 0.30 +1.6 135,830 - BACOVA_03422 0.30 -1.0 135,840 + BACOVA_03422 0.31 +2.0 135,840 + BACOVA_03422 0.31 +1.1 135,948 + BACOVA_03422 0.35 -1.1 135,949 - BACOVA_03422 0.35 +1.4 135,949 - BACOVA_03422 0.35 +1.0 135,949 - BACOVA_03422 0.35 -0.1 135,952 + BACOVA_03422 0.35 +2.2 135,953 - BACOVA_03422 0.36 -1.8 135,953 - BACOVA_03422 0.36 -0.1 135,993 + BACOVA_03422 0.37 +0.8 135,993 + BACOVA_03422 0.37 +2.3 136,044 + BACOVA_03422 0.39 -0.4 136,045 - BACOVA_03422 0.39 -0.3 136,047 - BACOVA_03422 0.39 +0.8 136,047 - BACOVA_03422 0.39 -2.2
Or see this region's nucleotide sequence