Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03066

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03064 and BACOVA_03065 are separated by 15 nucleotidesBACOVA_03065 and BACOVA_03066 are separated by 50 nucleotidesBACOVA_03066 and BACOVA_03067 are separated by 110 nucleotides BACOVA_03064: BACOVA_03064 - DNA-binding helix-turn-helix protein, at 137,156 to 137,575 _03064 BACOVA_03065: BACOVA_03065 - DNA-binding helix-turn-helix protein, at 137,591 to 137,995 _03065 BACOVA_03066: BACOVA_03066 - hypothetical protein, at 138,046 to 138,171 _03066 BACOVA_03067: BACOVA_03067 - hypothetical protein, at 138,282 to 139,298 _03067 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1 2at 137.065 kb on + strandat 137.069 kb on - strandat 137.092 kb on + strandat 137.093 kb on - strandat 137.093 kb on - strandat 137.093 kb on - strandat 137.119 kb on - strandat 137.138 kb on + strandat 137.138 kb on + strandat 137.155 kb on + strandat 137.162 kb on - strandat 137.162 kb on - strandat 137.165 kb on - strandat 137.226 kb on - strand, within BACOVA_03064at 137.226 kb on - strand, within BACOVA_03064at 137.226 kb on - strand, within BACOVA_03064at 137.270 kb on - strand, within BACOVA_03064at 137.270 kb on - strand, within BACOVA_03064at 137.353 kb on - strand, within BACOVA_03064at 137.353 kb on - strand, within BACOVA_03064at 137.353 kb on - strand, within BACOVA_03064at 137.407 kb on + strand, within BACOVA_03064at 137.407 kb on + strand, within BACOVA_03064at 137.412 kb on - strand, within BACOVA_03064at 137.453 kb on + strand, within BACOVA_03064at 137.453 kb on + strand, within BACOVA_03064at 137.454 kb on - strand, within BACOVA_03064at 137.465 kb on - strand, within BACOVA_03064at 137.476 kb on + strand, within BACOVA_03064at 137.477 kb on - strand, within BACOVA_03064at 137.505 kb on - strand, within BACOVA_03064at 137.548 kb on - strandat 137.548 kb on - strandat 137.573 kb on + strandat 137.614 kb on + strandat 137.614 kb on + strandat 137.614 kb on + strandat 137.614 kb on + strandat 137.615 kb on - strandat 137.696 kb on - strand, within BACOVA_03065at 137.755 kb on - strand, within BACOVA_03065at 137.787 kb on + strand, within BACOVA_03065at 137.788 kb on - strand, within BACOVA_03065at 137.825 kb on + strand, within BACOVA_03065at 137.828 kb on - strand, within BACOVA_03065at 137.828 kb on - strand, within BACOVA_03065at 137.831 kb on - strand, within BACOVA_03065at 137.831 kb on - strand, within BACOVA_03065at 137.837 kb on - strand, within BACOVA_03065at 137.875 kb on + strand, within BACOVA_03065at 137.879 kb on - strand, within BACOVA_03065at 137.879 kb on - strand, within BACOVA_03065at 137.885 kb on - strand, within BACOVA_03065at 137.900 kb on - strand, within BACOVA_03065at 137.993 kb on + strandat 137.993 kb on + strandat 138.027 kb on + strandat 138.028 kb on - strandat 138.028 kb on - strandat 138.031 kb on + strandat 138.040 kb on - strandat 138.050 kb on + strandat 138.051 kb on - strandat 138.051 kb on - strandat 138.051 kb on - strandat 138.084 kb on - strand, within BACOVA_03066at 138.170 kb on - strandat 138.170 kb on - strandat 138.184 kb on + strandat 138.185 kb on - strandat 138.228 kb on + strandat 138.232 kb on + strandat 138.233 kb on - strandat 138.270 kb on + strandat 138.270 kb on + strandat 138.271 kb on - strandat 138.271 kb on - strandat 138.280 kb on + strandat 138.283 kb on + strandat 138.290 kb on + strandat 138.290 kb on + strandat 138.291 kb on - strandat 138.294 kb on + strandat 138.350 kb on + strandat 138.355 kb on + strandat 138.356 kb on - strandat 138.373 kb on - strandat 138.380 kb on + strandat 138.380 kb on + strandat 138.380 kb on + strandat 138.381 kb on - strandat 138.381 kb on - strandat 138.381 kb on - strandat 138.443 kb on - strand, within BACOVA_03067at 138.446 kb on + strand, within BACOVA_03067at 138.446 kb on + strand, within BACOVA_03067at 138.447 kb on - strand, within BACOVA_03067at 138.449 kb on + strand, within BACOVA_03067at 138.449 kb on + strand, within BACOVA_03067at 138.453 kb on + strand, within BACOVA_03067at 138.475 kb on - strand, within BACOVA_03067at 138.486 kb on + strand, within BACOVA_03067at 138.486 kb on + strand, within BACOVA_03067at 138.487 kb on - strand, within BACOVA_03067at 138.487 kb on - strand, within BACOVA_03067at 138.487 kb on - strand, within BACOVA_03067at 138.487 kb on - strand, within BACOVA_03067at 138.495 kb on - strand, within BACOVA_03067at 138.497 kb on - strand, within BACOVA_03067at 138.497 kb on - strand, within BACOVA_03067at 138.552 kb on + strand, within BACOVA_03067at 138.573 kb on + strand, within BACOVA_03067at 138.632 kb on + strand, within BACOVA_03067at 138.635 kb on - strand, within BACOVA_03067at 138.646 kb on - strand, within BACOVA_03067at 138.654 kb on + strand, within BACOVA_03067at 138.685 kb on + strand, within BACOVA_03067at 138.686 kb on - strand, within BACOVA_03067at 138.686 kb on - strand, within BACOVA_03067at 138.686 kb on - strand, within BACOVA_03067at 138.686 kb on - strand, within BACOVA_03067at 138.701 kb on - strand, within BACOVA_03067at 138.704 kb on - strand, within BACOVA_03067at 138.704 kb on - strand, within BACOVA_03067at 138.708 kb on + strand, within BACOVA_03067at 138.715 kb on - strand, within BACOVA_03067at 138.733 kb on - strand, within BACOVA_03067at 138.773 kb on + strand, within BACOVA_03067at 138.781 kb on + strand, within BACOVA_03067at 138.788 kb on + strand, within BACOVA_03067at 138.789 kb on - strand, within BACOVA_03067at 138.803 kb on + strand, within BACOVA_03067at 138.862 kb on + strand, within BACOVA_03067at 138.904 kb on + strand, within BACOVA_03067at 138.904 kb on + strand, within BACOVA_03067at 138.905 kb on - strand, within BACOVA_03067at 138.931 kb on - strand, within BACOVA_03067at 138.935 kb on + strand, within BACOVA_03067at 138.935 kb on + strand, within BACOVA_03067at 138.936 kb on - strand, within BACOVA_03067at 138.936 kb on - strand, within BACOVA_03067at 138.987 kb on + strand, within BACOVA_03067at 139.024 kb on + strand, within BACOVA_03067at 139.029 kb on - strand, within BACOVA_03067at 139.032 kb on + strand, within BACOVA_03067at 139.032 kb on + strand, within BACOVA_03067at 139.043 kb on + strand, within BACOVA_03067at 139.053 kb on + strand, within BACOVA_03067at 139.054 kb on - strand, within BACOVA_03067at 139.054 kb on - strand, within BACOVA_03067at 139.055 kb on + strand, within BACOVA_03067at 139.055 kb on + strand, within BACOVA_03067at 139.063 kb on + strand, within BACOVA_03067at 139.101 kb on + strand, within BACOVA_03067at 139.102 kb on - strand, within BACOVA_03067at 139.116 kb on + strand, within BACOVA_03067at 139.117 kb on - strand, within BACOVA_03067at 139.117 kb on - strand, within BACOVA_03067at 139.124 kb on - strand, within BACOVA_03067at 139.129 kb on + strand, within BACOVA_03067at 139.129 kb on + strand, within BACOVA_03067at 139.129 kb on + strand, within BACOVA_03067at 139.170 kb on - strand, within BACOVA_03067

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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137,065 + -0.7
137,069 - -0.0
137,092 + -0.9
137,093 - +1.5
137,093 - -2.2
137,093 - +0.9
137,119 - -1.6
137,138 + +0.1
137,138 + +0.6
137,155 + +0.5
137,162 - +0.1
137,162 - -0.3
137,165 - +0.2
137,226 - BACOVA_03064 0.17 +0.9
137,226 - BACOVA_03064 0.17 -0.0
137,226 - BACOVA_03064 0.17 -0.3
137,270 - BACOVA_03064 0.27 -0.3
137,270 - BACOVA_03064 0.27 -0.3
137,353 - BACOVA_03064 0.47 -0.7
137,353 - BACOVA_03064 0.47 -0.5
137,353 - BACOVA_03064 0.47 -1.1
137,407 + BACOVA_03064 0.60 +0.1
137,407 + BACOVA_03064 0.60 -1.5
137,412 - BACOVA_03064 0.61 -0.4
137,453 + BACOVA_03064 0.71 -0.1
137,453 + BACOVA_03064 0.71 +0.9
137,454 - BACOVA_03064 0.71 -1.2
137,465 - BACOVA_03064 0.74 -0.2
137,476 + BACOVA_03064 0.76 -2.1
137,477 - BACOVA_03064 0.76 -1.3
137,505 - BACOVA_03064 0.83 -0.5
137,548 - +1.7
137,548 - -1.7
137,573 + -2.0
137,614 + +0.9
137,614 + -1.2
137,614 + -1.7
137,614 + -0.5
137,615 - +1.2
137,696 - BACOVA_03065 0.26 -0.8
137,755 - BACOVA_03065 0.40 -1.4
137,787 + BACOVA_03065 0.48 +0.7
137,788 - BACOVA_03065 0.49 -1.1
137,825 + BACOVA_03065 0.58 +0.5
137,828 - BACOVA_03065 0.59 +0.6
137,828 - BACOVA_03065 0.59 +0.1
137,831 - BACOVA_03065 0.59 +2.4
137,831 - BACOVA_03065 0.59 +0.2
137,837 - BACOVA_03065 0.61 -0.8
137,875 + BACOVA_03065 0.70 -2.3
137,879 - BACOVA_03065 0.71 +0.8
137,879 - BACOVA_03065 0.71 -0.7
137,885 - BACOVA_03065 0.73 -1.7
137,900 - BACOVA_03065 0.76 -1.2
137,993 + +0.7
137,993 + -1.7
138,027 + +0.5
138,028 - -2.2
138,028 - -1.6
138,031 + -0.9
138,040 - +0.5
138,050 + -0.4
138,051 - +1.1
138,051 - +0.4
138,051 - +0.7
138,084 - BACOVA_03066 0.30 -0.1
138,170 - +0.4
138,170 - -0.5
138,184 + -0.8
138,185 - -0.6
138,228 + +0.4
138,232 + +0.5
138,233 - -0.0
138,270 + +0.7
138,270 + -0.0
138,271 - +0.3
138,271 - +1.4
138,280 + -0.6
138,283 + +0.3
138,290 + +0.7
138,290 + +0.9
138,291 - -0.3
138,294 + -1.1
138,350 + -1.7
138,355 + -0.8
138,356 - +1.9
138,373 - -1.1
138,380 + -0.7
138,380 + +0.5
138,380 + -1.6
138,381 - -0.4
138,381 - -0.4
138,381 - -1.2
138,443 - BACOVA_03067 0.16 -1.4
138,446 + BACOVA_03067 0.16 -1.0
138,446 + BACOVA_03067 0.16 -1.8
138,447 - BACOVA_03067 0.16 -1.2
138,449 + BACOVA_03067 0.16 +0.2
138,449 + BACOVA_03067 0.16 +0.1
138,453 + BACOVA_03067 0.17 -0.6
138,475 - BACOVA_03067 0.19 -0.8
138,486 + BACOVA_03067 0.20 +0.9
138,486 + BACOVA_03067 0.20 -0.5
138,487 - BACOVA_03067 0.20 +0.1
138,487 - BACOVA_03067 0.20 -1.0
138,487 - BACOVA_03067 0.20 -1.3
138,487 - BACOVA_03067 0.20 -0.5
138,495 - BACOVA_03067 0.21 +0.9
138,497 - BACOVA_03067 0.21 -1.2
138,497 - BACOVA_03067 0.21 -1.7
138,552 + BACOVA_03067 0.27 -0.2
138,573 + BACOVA_03067 0.29 -1.6
138,632 + BACOVA_03067 0.34 +0.3
138,635 - BACOVA_03067 0.35 -1.2
138,646 - BACOVA_03067 0.36 +0.7
138,654 + BACOVA_03067 0.37 -0.7
138,685 + BACOVA_03067 0.40 -1.3
138,686 - BACOVA_03067 0.40 -2.0
138,686 - BACOVA_03067 0.40 +0.1
138,686 - BACOVA_03067 0.40 -0.9
138,686 - BACOVA_03067 0.40 +0.1
138,701 - BACOVA_03067 0.41 -0.4
138,704 - BACOVA_03067 0.41 -1.0
138,704 - BACOVA_03067 0.41 -0.6
138,708 + BACOVA_03067 0.42 -0.4
138,715 - BACOVA_03067 0.43 -0.4
138,733 - BACOVA_03067 0.44 -2.4
138,773 + BACOVA_03067 0.48 -0.2
138,781 + BACOVA_03067 0.49 +0.7
138,788 + BACOVA_03067 0.50 -2.2
138,789 - BACOVA_03067 0.50 -0.9
138,803 + BACOVA_03067 0.51 -0.9
138,862 + BACOVA_03067 0.57 -1.0
138,904 + BACOVA_03067 0.61 -0.7
138,904 + BACOVA_03067 0.61 +0.8
138,905 - BACOVA_03067 0.61 +1.2
138,931 - BACOVA_03067 0.64 -0.2
138,935 + BACOVA_03067 0.64 +0.7
138,935 + BACOVA_03067 0.64 -1.5
138,936 - BACOVA_03067 0.64 -0.4
138,936 - BACOVA_03067 0.64 +0.7
138,987 + BACOVA_03067 0.69 +0.4
139,024 + BACOVA_03067 0.73 +0.1
139,029 - BACOVA_03067 0.73 -1.6
139,032 + BACOVA_03067 0.74 -1.1
139,032 + BACOVA_03067 0.74 +1.2
139,043 + BACOVA_03067 0.75 +0.3
139,053 + BACOVA_03067 0.76 +0.5
139,054 - BACOVA_03067 0.76 +0.7
139,054 - BACOVA_03067 0.76 -0.5
139,055 + BACOVA_03067 0.76 -1.1
139,055 + BACOVA_03067 0.76 -1.1
139,063 + BACOVA_03067 0.77 -1.4
139,101 + BACOVA_03067 0.81 -0.9
139,102 - BACOVA_03067 0.81 +0.1
139,116 + BACOVA_03067 0.82 +0.2
139,117 - BACOVA_03067 0.82 +1.4
139,117 - BACOVA_03067 0.82 -0.6
139,124 - BACOVA_03067 0.83 -1.3
139,129 + BACOVA_03067 0.83 -0.3
139,129 + BACOVA_03067 0.83 -0.0
139,129 + BACOVA_03067 0.83 +0.5
139,170 - BACOVA_03067 0.87 -1.1

Or see this region's nucleotide sequence