Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02279 and BACOVA_02280 are separated by 8 nucleotides BACOVA_02280 and BACOVA_02282 are separated by 13 nucleotides BACOVA_02282 and BACOVA_02281 overlap by 47 nucleotides BACOVA_02281 and BACOVA_02283 are separated by 17 nucleotides BACOVA_02283 and BACOVA_02284 are separated by 11 nucleotides
BACOVA_02279: BACOVA_02279 - hypothetical protein, at 53,538 to 54,134
_02279
BACOVA_02280: BACOVA_02280 - hypothetical protein, at 54,143 to 54,571
_02280
BACOVA_02282: BACOVA_02282 - hypothetical protein, at 54,585 to 54,701
_02282
BACOVA_02281: BACOVA_02281 - hypothetical protein, at 54,655 to 55,011
_02281
BACOVA_02283: BACOVA_02283 - hypothetical protein, at 55,029 to 55,319
_02283
BACOVA_02284: BACOVA_02284 - hypothetical protein, at 55,331 to 56,683
_02284
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.115 kb on + strand at 54.127 kb on + strand at 54.163 kb on - strand at 54.191 kb on + strand, within BACOVA_02280 at 54.192 kb on - strand, within BACOVA_02280 at 54.195 kb on - strand, within BACOVA_02280 at 54.219 kb on + strand, within BACOVA_02280 at 54.220 kb on - strand, within BACOVA_02280 at 54.276 kb on + strand, within BACOVA_02280 at 54.282 kb on + strand, within BACOVA_02280 at 54.569 kb on + strand at 54.569 kb on + strand at 54.569 kb on + strand at 54.569 kb on + strand at 54.570 kb on - strand at 54.570 kb on - strand at 54.572 kb on + strand at 54.573 kb on - strand at 54.573 kb on - strand at 54.576 kb on + strand at 54.576 kb on + strand at 54.576 kb on + strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.579 kb on - strand at 54.587 kb on - strand at 54.665 kb on + strand at 54.799 kb on - strand, within BACOVA_02281 at 54.964 kb on - strand, within BACOVA_02281 at 55.009 kb on + strand at 55.216 kb on + strand, within BACOVA_02283 at 55.216 kb on + strand, within BACOVA_02283 at 55.236 kb on + strand, within BACOVA_02283 at 55.237 kb on - strand, within BACOVA_02283 at 55.285 kb on + strand, within BACOVA_02283 at 55.293 kb on + strand at 55.311 kb on - strand at 55.435 kb on - strand at 55.659 kb on + strand, within BACOVA_02284 at 55.659 kb on + strand, within BACOVA_02284 at 55.660 kb on - strand, within BACOVA_02284 at 55.712 kb on + strand, within BACOVA_02284 at 55.785 kb on + strand, within BACOVA_02284 at 55.786 kb on - strand, within BACOVA_02284 at 55.786 kb on - strand, within BACOVA_02284 at 55.899 kb on - strand, within BACOVA_02284 at 55.947 kb on + strand, within BACOVA_02284 at 55.957 kb on + strand, within BACOVA_02284 at 55.982 kb on + strand, within BACOVA_02284 at 56.109 kb on + strand, within BACOVA_02284 at 56.110 kb on - strand, within BACOVA_02284 at 56.110 kb on - strand, within BACOVA_02284 at 56.231 kb on + strand, within BACOVA_02284 at 56.291 kb on + strand, within BACOVA_02284 at 56.310 kb on - strand, within BACOVA_02284
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 54,115 + +0.6 54,127 + -0.1 54,163 - -0.3 54,191 + BACOVA_02280 0.11 +0.9 54,192 - BACOVA_02280 0.11 -0.6 54,195 - BACOVA_02280 0.12 +0.8 54,219 + BACOVA_02280 0.18 -0.4 54,220 - BACOVA_02280 0.18 -0.4 54,276 + BACOVA_02280 0.31 -1.1 54,282 + BACOVA_02280 0.32 -0.8 54,569 + +0.4 54,569 + +0.3 54,569 + -0.7 54,569 + -0.7 54,570 - -1.1 54,570 - -1.1 54,572 + +0.7 54,573 - -0.2 54,573 - -1.0 54,576 + +0.1 54,576 + +2.2 54,576 + +0.8 54,577 - +0.5 54,577 - -0.6 54,577 - -0.3 54,577 - +1.1 54,579 - +0.4 54,587 - +0.0 54,665 + -0.5 54,799 - BACOVA_02281 0.40 -1.1 54,964 - BACOVA_02281 0.87 +0.4 55,009 + +1.0 55,216 + BACOVA_02283 0.64 +0.6 55,216 + BACOVA_02283 0.64 +1.2 55,236 + BACOVA_02283 0.71 +0.6 55,237 - BACOVA_02283 0.71 +0.8 55,285 + BACOVA_02283 0.88 +0.7 55,293 + +0.2 55,311 - -1.2 55,435 - +0.0 55,659 + BACOVA_02284 0.24 +0.5 55,659 + BACOVA_02284 0.24 +0.7 55,660 - BACOVA_02284 0.24 +1.1 55,712 + BACOVA_02284 0.28 +1.3 55,785 + BACOVA_02284 0.34 +1.8 55,786 - BACOVA_02284 0.34 -0.5 55,786 - BACOVA_02284 0.34 -0.2 55,899 - BACOVA_02284 0.42 +1.1 55,947 + BACOVA_02284 0.46 +0.5 55,957 + BACOVA_02284 0.46 -1.8 55,982 + BACOVA_02284 0.48 +0.7 56,109 + BACOVA_02284 0.58 +1.4 56,110 - BACOVA_02284 0.58 +2.2 56,110 - BACOVA_02284 0.58 +0.1 56,231 + BACOVA_02284 0.67 +0.3 56,291 + BACOVA_02284 0.71 -0.3 56,310 - BACOVA_02284 0.72 +0.6
Or see this region's nucleotide sequence