Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02263

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02261 and BACOVA_02262 are separated by 100 nucleotidesBACOVA_02262 and BACOVA_02263 are separated by 111 nucleotidesBACOVA_02263 and BACOVA_02264 are separated by 74 nucleotides BACOVA_02261: BACOVA_02261 - methionine aminopeptidase, type I, at 37,855 to 38,709 _02261 BACOVA_02262: BACOVA_02262 - hypothetical protein, at 38,810 to 39,433 _02262 BACOVA_02263: BACOVA_02263 - hypothetical protein, at 39,545 to 39,751 _02263 BACOVA_02264: BACOVA_02264 - radical SAM domain protein, at 39,826 to 41,184 _02264 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.569 kb on - strand, within BACOVA_02261at 38.596 kb on + strand, within BACOVA_02261at 38.616 kb on + strand, within BACOVA_02261at 38.641 kb on + strandat 38.641 kb on + strandat 38.653 kb on + strandat 38.670 kb on + strandat 38.711 kb on - strandat 38.711 kb on - strandat 38.720 kb on + strandat 38.721 kb on - strandat 38.730 kb on + strandat 38.761 kb on - strandat 38.811 kb on + strandat 38.841 kb on - strandat 38.871 kb on + strandat 38.878 kb on - strand, within BACOVA_02262at 38.908 kb on + strand, within BACOVA_02262at 38.996 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.003 kb on + strand, within BACOVA_02262at 39.004 kb on - strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.005 kb on + strand, within BACOVA_02262at 39.006 kb on - strand, within BACOVA_02262at 39.029 kb on + strand, within BACOVA_02262at 39.092 kb on - strand, within BACOVA_02262at 39.116 kb on + strand, within BACOVA_02262at 39.123 kb on - strand, within BACOVA_02262at 39.132 kb on + strand, within BACOVA_02262at 39.161 kb on + strand, within BACOVA_02262at 39.162 kb on - strand, within BACOVA_02262at 39.174 kb on + strand, within BACOVA_02262at 39.175 kb on - strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.261 kb on + strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.262 kb on - strand, within BACOVA_02262at 39.296 kb on - strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.299 kb on + strand, within BACOVA_02262at 39.381 kb on - strandat 39.393 kb on - strandat 39.434 kb on - strandat 39.458 kb on + strandat 39.458 kb on + strandat 39.459 kb on - strandat 39.459 kb on - strandat 39.505 kb on - strandat 39.511 kb on - strandat 39.520 kb on + strandat 39.543 kb on - strandat 39.560 kb on - strandat 39.579 kb on - strand, within BACOVA_02263at 39.647 kb on + strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.648 kb on - strand, within BACOVA_02263at 39.681 kb on - strand, within BACOVA_02263at 39.702 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.720 kb on - strand, within BACOVA_02263at 39.743 kb on + strandat 39.744 kb on - strandat 39.877 kb on + strandat 39.899 kb on - strandat 39.900 kb on + strandat 39.957 kb on + strandat 39.957 kb on + strandat 39.959 kb on + strandat 39.959 kb on + strandat 39.960 kb on - strandat 39.960 kb on - strandat 39.987 kb on - strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.009 kb on + strand, within BACOVA_02264at 40.041 kb on - strand, within BACOVA_02264at 40.041 kb on - strand, within BACOVA_02264at 40.059 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.064 kb on - strand, within BACOVA_02264at 40.109 kb on - strand, within BACOVA_02264at 40.145 kb on + strand, within BACOVA_02264at 40.153 kb on + strand, within BACOVA_02264at 40.190 kb on + strand, within BACOVA_02264at 40.207 kb on + strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.211 kb on - strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.246 kb on + strand, within BACOVA_02264at 40.251 kb on - strand, within BACOVA_02264at 40.357 kb on - strand, within BACOVA_02264at 40.369 kb on + strand, within BACOVA_02264at 40.370 kb on - strand, within BACOVA_02264at 40.426 kb on + strand, within BACOVA_02264at 40.448 kb on - strand, within BACOVA_02264at 40.454 kb on - strand, within BACOVA_02264at 40.507 kb on + strand, within BACOVA_02264at 40.507 kb on + strand, within BACOVA_02264at 40.508 kb on - strand, within BACOVA_02264at 40.568 kb on - strand, within BACOVA_02264at 40.617 kb on + strand, within BACOVA_02264at 40.736 kb on + strand, within BACOVA_02264at 40.737 kb on - strand, within BACOVA_02264

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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38,569 - BACOVA_02261 0.84 -0.2
38,596 + BACOVA_02261 0.87 +0.4
38,616 + BACOVA_02261 0.89 -0.1
38,641 + -0.7
38,641 + +0.5
38,653 + +1.0
38,670 + -0.2
38,711 - -0.5
38,711 - +0.8
38,720 + +0.0
38,721 - -1.0
38,730 + +3.0
38,761 - -0.6
38,811 + +0.0
38,841 - +0.0
38,871 + +1.1
38,878 - BACOVA_02262 0.11 -0.9
38,908 + BACOVA_02262 0.16 -1.5
38,996 + BACOVA_02262 0.30 -1.1
39,003 + BACOVA_02262 0.31 +0.3
39,003 + BACOVA_02262 0.31 +0.3
39,004 - BACOVA_02262 0.31 +1.0
39,005 + BACOVA_02262 0.31 -2.1
39,005 + BACOVA_02262 0.31 -0.7
39,006 - BACOVA_02262 0.31 +0.1
39,029 + BACOVA_02262 0.35 +1.6
39,092 - BACOVA_02262 0.45 -0.6
39,116 + BACOVA_02262 0.49 -0.4
39,123 - BACOVA_02262 0.50 -0.9
39,132 + BACOVA_02262 0.52 -0.2
39,161 + BACOVA_02262 0.56 +0.4
39,162 - BACOVA_02262 0.56 -0.3
39,174 + BACOVA_02262 0.58 -0.9
39,175 - BACOVA_02262 0.58 -0.9
39,261 + BACOVA_02262 0.72 +0.5
39,261 + BACOVA_02262 0.72 +1.3
39,261 + BACOVA_02262 0.72 +1.6
39,262 - BACOVA_02262 0.72 +0.4
39,262 - BACOVA_02262 0.72 -1.1
39,296 - BACOVA_02262 0.78 -0.9
39,299 + BACOVA_02262 0.78 +0.6
39,299 + BACOVA_02262 0.78 -0.7
39,381 - -0.5
39,393 - +0.1
39,434 - -1.2
39,458 + +0.9
39,458 + +1.0
39,459 - +0.4
39,459 - +0.6
39,505 - +1.3
39,511 - +1.3
39,520 + -1.5
39,543 - +0.7
39,560 - -0.2
39,579 - BACOVA_02263 0.16 +1.9
39,647 + BACOVA_02263 0.49 +1.1
39,648 - BACOVA_02263 0.50 -0.2
39,648 - BACOVA_02263 0.50 +0.0
39,681 - BACOVA_02263 0.66 +0.6
39,702 - BACOVA_02263 0.76 +0.8
39,720 - BACOVA_02263 0.85 -1.1
39,720 - BACOVA_02263 0.85 -0.7
39,720 - BACOVA_02263 0.85 -0.1
39,743 + +1.3
39,744 - +0.3
39,877 + -0.1
39,899 - +1.0
39,900 + -0.1
39,957 + -0.4
39,957 + +0.7
39,959 + +1.1
39,959 + -0.8
39,960 - +0.6
39,960 - +0.8
39,987 - BACOVA_02264 0.12 -0.3
40,009 + BACOVA_02264 0.13 -0.7
40,009 + BACOVA_02264 0.13 -0.2
40,009 + BACOVA_02264 0.13 -0.9
40,041 - BACOVA_02264 0.16 +0.1
40,041 - BACOVA_02264 0.16 +0.3
40,059 - BACOVA_02264 0.17 -2.3
40,064 - BACOVA_02264 0.18 -1.1
40,064 - BACOVA_02264 0.18 -0.5
40,064 - BACOVA_02264 0.18 +0.4
40,064 - BACOVA_02264 0.18 -0.9
40,109 - BACOVA_02264 0.21 -1.2
40,145 + BACOVA_02264 0.23 +0.4
40,153 + BACOVA_02264 0.24 +1.7
40,190 + BACOVA_02264 0.27 +0.8
40,207 + BACOVA_02264 0.28 +0.6
40,211 - BACOVA_02264 0.28 +0.3
40,211 - BACOVA_02264 0.28 +0.8
40,211 - BACOVA_02264 0.28 -0.7
40,246 + BACOVA_02264 0.31 +0.4
40,246 + BACOVA_02264 0.31 -0.9
40,246 + BACOVA_02264 0.31 +0.3
40,246 + BACOVA_02264 0.31 -0.2
40,251 - BACOVA_02264 0.31 -0.5
40,357 - BACOVA_02264 0.39 -0.6
40,369 + BACOVA_02264 0.40 +0.6
40,370 - BACOVA_02264 0.40 -1.9
40,426 + BACOVA_02264 0.44 -0.4
40,448 - BACOVA_02264 0.46 -0.6
40,454 - BACOVA_02264 0.46 -0.3
40,507 + BACOVA_02264 0.50 +0.6
40,507 + BACOVA_02264 0.50 +0.5
40,508 - BACOVA_02264 0.50 -0.9
40,568 - BACOVA_02264 0.55 -0.6
40,617 + BACOVA_02264 0.58 +0.8
40,736 + BACOVA_02264 0.67 +0.3
40,737 - BACOVA_02264 0.67 +0.0

Or see this region's nucleotide sequence