Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02066 and BACOVA_02067 are separated by 250 nucleotides BACOVA_02067 and BACOVA_02068 are separated by 84 nucleotides BACOVA_02068 and BACOVA_02069 are separated by 177 nucleotides
BACOVA_02066: BACOVA_02066 - hypothetical protein, at 386,071 to 386,778
_02066
BACOVA_02067: BACOVA_02067 - alkyl hydroperoxide reductase, F subunit, at 387,029 to 388,579
_02067
BACOVA_02068: BACOVA_02068 - peroxiredoxin, at 388,664 to 389,230
_02068
BACOVA_02069: BACOVA_02069 - hydrolase, NUDIX family, at 389,408 to 389,968
_02069
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.058 kb on - strand at 386.067 kb on + strand at 386.067 kb on + strand at 386.080 kb on + strand at 386.087 kb on + strand at 386.087 kb on + strand at 386.087 kb on + strand at 386.096 kb on + strand at 386.099 kb on + strand at 386.099 kb on + strand at 386.099 kb on + strand at 386.244 kb on - strand, within BACOVA_02066 at 386.246 kb on + strand, within BACOVA_02066 at 386.246 kb on + strand, within BACOVA_02066 at 386.257 kb on + strand, within BACOVA_02066 at 386.312 kb on + strand, within BACOVA_02066 at 386.313 kb on - strand, within BACOVA_02066 at 386.325 kb on + strand, within BACOVA_02066 at 386.326 kb on - strand, within BACOVA_02066 at 386.338 kb on + strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.340 kb on + strand, within BACOVA_02066 at 386.385 kb on + strand, within BACOVA_02066 at 386.405 kb on - strand, within BACOVA_02066 at 386.448 kb on + strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.503 kb on - strand, within BACOVA_02066 at 386.518 kb on + strand, within BACOVA_02066 at 386.518 kb on + strand, within BACOVA_02066 at 386.586 kb on - strand, within BACOVA_02066 at 386.600 kb on + strand, within BACOVA_02066 at 386.600 kb on - strand, within BACOVA_02066 at 386.603 kb on - strand, within BACOVA_02066 at 386.603 kb on - strand, within BACOVA_02066 at 386.618 kb on + strand, within BACOVA_02066 at 386.619 kb on - strand, within BACOVA_02066 at 386.691 kb on - strand, within BACOVA_02066 at 386.762 kb on - strand at 386.762 kb on - strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.764 kb on - strand at 386.767 kb on + strand at 386.767 kb on + strand at 386.767 kb on + strand at 386.768 kb on - strand at 386.768 kb on - strand at 386.768 kb on - strand at 386.780 kb on + strand at 386.804 kb on + strand at 386.805 kb on - strand at 386.821 kb on - strand at 386.821 kb on - strand at 386.917 kb on + strand at 386.921 kb on + strand at 386.929 kb on - strand at 386.949 kb on - strand at 386.957 kb on + strand at 386.974 kb on - strand at 386.974 kb on - strand at 386.974 kb on - strand at 386.988 kb on + strand at 387.000 kb on + strand at 387.001 kb on - strand at 387.014 kb on - strand at 387.021 kb on + strand at 387.035 kb on - strand at 387.092 kb on - strand at 387.097 kb on + strand at 387.097 kb on + strand at 387.109 kb on + strand at 387.110 kb on - strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.121 kb on + strand at 387.141 kb on + strand at 387.141 kb on + strand at 387.141 kb on + strand at 387.146 kb on - strand at 387.221 kb on + strand, within BACOVA_02067 at 387.229 kb on + strand, within BACOVA_02067 at 387.257 kb on + strand, within BACOVA_02067 at 387.257 kb on + strand, within BACOVA_02067 at 387.258 kb on - strand, within BACOVA_02067 at 387.258 kb on - strand, within BACOVA_02067 at 387.326 kb on - strand, within BACOVA_02067 at 387.326 kb on - strand, within BACOVA_02067 at 387.338 kb on + strand, within BACOVA_02067 at 387.338 kb on + strand, within BACOVA_02067 at 387.463 kb on + strand, within BACOVA_02067 at 387.509 kb on + strand, within BACOVA_02067 at 387.510 kb on - strand, within BACOVA_02067 at 387.510 kb on - strand, within BACOVA_02067 at 387.518 kb on + strand, within BACOVA_02067 at 387.519 kb on - strand, within BACOVA_02067 at 387.519 kb on - strand, within BACOVA_02067 at 387.581 kb on - strand, within BACOVA_02067 at 387.605 kb on - strand, within BACOVA_02067 at 387.674 kb on - strand, within BACOVA_02067 at 387.674 kb on - strand, within BACOVA_02067 at 387.714 kb on - strand, within BACOVA_02067 at 387.718 kb on + strand, within BACOVA_02067 at 387.719 kb on - strand, within BACOVA_02067 at 387.870 kb on - strand, within BACOVA_02067 at 387.870 kb on - strand, within BACOVA_02067 at 387.884 kb on - strand, within BACOVA_02067 at 387.894 kb on + strand, within BACOVA_02067 at 387.894 kb on + strand, within BACOVA_02067 at 387.895 kb on - strand, within BACOVA_02067 at 387.899 kb on - strand, within BACOVA_02067 at 387.946 kb on - strand, within BACOVA_02067 at 387.983 kb on - strand, within BACOVA_02067 at 388.034 kb on + strand, within BACOVA_02067 at 388.034 kb on + strand, within BACOVA_02067 at 388.035 kb on - strand, within BACOVA_02067 at 388.079 kb on + strand, within BACOVA_02067 at 388.080 kb on - strand, within BACOVA_02067 at 388.080 kb on - strand, within BACOVA_02067 at 388.095 kb on - strand, within BACOVA_02067 at 388.107 kb on + strand, within BACOVA_02067 at 388.135 kb on + strand, within BACOVA_02067 at 388.179 kb on - strand, within BACOVA_02067 at 388.196 kb on - strand, within BACOVA_02067 at 388.385 kb on + strand, within BACOVA_02067 at 388.386 kb on - strand, within BACOVA_02067 at 388.386 kb on - strand, within BACOVA_02067 at 388.386 kb on - strand, within BACOVA_02067 at 388.390 kb on + strand, within BACOVA_02067 at 388.429 kb on + strand at 388.448 kb on + strand at 388.500 kb on - strand at 388.505 kb on + strand at 388.505 kb on + strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.506 kb on - strand at 388.508 kb on - strand at 388.550 kb on + strand at 388.551 kb on - strand at 388.551 kb on - strand at 388.551 kb on - strand at 388.574 kb on + strand at 388.579 kb on + strand at 388.601 kb on + strand at 388.652 kb on + strand at 388.663 kb on - strand at 388.672 kb on + strand at 388.677 kb on - strand at 388.702 kb on + strand at 388.808 kb on - strand, within BACOVA_02068 at 388.813 kb on + strand, within BACOVA_02068 at 388.814 kb on - strand, within BACOVA_02068 at 388.814 kb on - strand, within BACOVA_02068 at 388.864 kb on + strand, within BACOVA_02068 at 388.864 kb on + strand, within BACOVA_02068 at 388.896 kb on + strand, within BACOVA_02068 at 388.896 kb on + strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.897 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 388.899 kb on - strand, within BACOVA_02068 at 389.031 kb on - strand, within BACOVA_02068 at 389.090 kb on + strand, within BACOVA_02068 at 389.091 kb on - strand, within BACOVA_02068 at 389.091 kb on - strand, within BACOVA_02068 at 389.099 kb on - strand, within BACOVA_02068 at 389.118 kb on - strand, within BACOVA_02068 at 389.231 kb on - strand at 389.237 kb on + strand at 389.255 kb on + strand at 389.270 kb on - strand at 389.271 kb on + strand at 389.272 kb on - strand at 389.315 kb on + strand at 389.387 kb on - strand at 389.397 kb on + strand at 389.398 kb on - strand at 389.399 kb on + strand at 389.413 kb on + strand at 389.437 kb on + strand at 389.437 kb on + strand at 389.438 kb on - strand at 389.469 kb on + strand, within BACOVA_02069 at 389.470 kb on - strand, within BACOVA_02069 at 389.506 kb on + strand, within BACOVA_02069 at 389.521 kb on + strand, within BACOVA_02069 at 389.552 kb on + strand, within BACOVA_02069 at 389.578 kb on - strand, within BACOVA_02069
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 386,058 - -1.9 386,067 + -0.8 386,067 + -1.4 386,080 + -1.3 386,087 + -0.6 386,087 + +0.6 386,087 + -0.7 386,096 + -1.0 386,099 + -1.4 386,099 + -0.2 386,099 + -1.2 386,244 - BACOVA_02066 0.24 -0.4 386,246 + BACOVA_02066 0.25 -0.3 386,246 + BACOVA_02066 0.25 -0.2 386,257 + BACOVA_02066 0.26 +0.2 386,312 + BACOVA_02066 0.34 -1.0 386,313 - BACOVA_02066 0.34 +0.3 386,325 + BACOVA_02066 0.36 -0.2 386,326 - BACOVA_02066 0.36 -1.7 386,338 + BACOVA_02066 0.38 -2.5 386,339 - BACOVA_02066 0.38 -1.2 386,339 - BACOVA_02066 0.38 +0.7 386,339 - BACOVA_02066 0.38 -0.6 386,339 - BACOVA_02066 0.38 +1.0 386,340 + BACOVA_02066 0.38 +0.1 386,385 + BACOVA_02066 0.44 +0.9 386,405 - BACOVA_02066 0.47 -0.2 386,448 + BACOVA_02066 0.53 -0.9 386,501 - BACOVA_02066 0.61 -2.8 386,501 - BACOVA_02066 0.61 +0.7 386,501 - BACOVA_02066 0.61 +0.7 386,503 - BACOVA_02066 0.61 -1.1 386,518 + BACOVA_02066 0.63 -0.1 386,518 + BACOVA_02066 0.63 +2.6 386,586 - BACOVA_02066 0.73 -1.1 386,600 + BACOVA_02066 0.75 -0.2 386,600 - BACOVA_02066 0.75 -2.2 386,603 - BACOVA_02066 0.75 -0.8 386,603 - BACOVA_02066 0.75 -0.1 386,618 + BACOVA_02066 0.77 +2.9 386,619 - BACOVA_02066 0.77 +0.5 386,691 - BACOVA_02066 0.88 -0.7 386,762 - +0.5 386,762 - -0.3 386,763 + +0.3 386,763 + -0.6 386,763 + +2.2 386,763 + -1.1 386,763 + +0.0 386,764 - -1.1 386,767 + -0.8 386,767 + +0.3 386,767 + -0.5 386,768 - -0.3 386,768 - -1.2 386,768 - +0.4 386,780 + +0.9 386,804 + -0.0 386,805 - +1.3 386,821 - -0.1 386,821 - -1.2 386,917 + +0.2 386,921 + -1.9 386,929 - -0.8 386,949 - +0.2 386,957 + -0.4 386,974 - -0.1 386,974 - +0.2 386,974 - +0.1 386,988 + -0.9 387,000 + -1.0 387,001 - -0.4 387,014 - -1.3 387,021 + -0.9 387,035 - +0.3 387,092 - +0.8 387,097 + -0.1 387,097 + -0.7 387,109 + -2.5 387,110 - +0.1 387,111 + +0.2 387,111 + -0.8 387,111 + +0.3 387,112 - -2.2 387,112 - -1.2 387,112 - -0.4 387,112 - -0.5 387,121 + -0.6 387,141 + +1.3 387,141 + -0.9 387,141 + -0.3 387,146 - +1.1 387,221 + BACOVA_02067 0.12 +0.1 387,229 + BACOVA_02067 0.13 -2.4 387,257 + BACOVA_02067 0.15 -1.1 387,257 + BACOVA_02067 0.15 -0.5 387,258 - BACOVA_02067 0.15 +0.6 387,258 - BACOVA_02067 0.15 +2.3 387,326 - BACOVA_02067 0.19 -0.1 387,326 - BACOVA_02067 0.19 -1.1 387,338 + BACOVA_02067 0.20 -0.1 387,338 + BACOVA_02067 0.20 -1.4 387,463 + BACOVA_02067 0.28 -1.0 387,509 + BACOVA_02067 0.31 -1.7 387,510 - BACOVA_02067 0.31 +0.3 387,510 - BACOVA_02067 0.31 -0.6 387,518 + BACOVA_02067 0.32 -2.0 387,519 - BACOVA_02067 0.32 -1.8 387,519 - BACOVA_02067 0.32 +0.2 387,581 - BACOVA_02067 0.36 -2.1 387,605 - BACOVA_02067 0.37 +1.6 387,674 - BACOVA_02067 0.42 -1.2 387,674 - BACOVA_02067 0.42 -0.6 387,714 - BACOVA_02067 0.44 -1.5 387,718 + BACOVA_02067 0.44 -1.7 387,719 - BACOVA_02067 0.44 -0.1 387,870 - BACOVA_02067 0.54 -0.9 387,870 - BACOVA_02067 0.54 -1.7 387,884 - BACOVA_02067 0.55 -0.4 387,894 + BACOVA_02067 0.56 +0.4 387,894 + BACOVA_02067 0.56 +0.4 387,895 - BACOVA_02067 0.56 -1.2 387,899 - BACOVA_02067 0.56 +0.8 387,946 - BACOVA_02067 0.59 -2.4 387,983 - BACOVA_02067 0.62 -0.6 388,034 + BACOVA_02067 0.65 +1.0 388,034 + BACOVA_02067 0.65 +0.5 388,035 - BACOVA_02067 0.65 +0.3 388,079 + BACOVA_02067 0.68 -0.9 388,080 - BACOVA_02067 0.68 +0.2 388,080 - BACOVA_02067 0.68 -0.5 388,095 - BACOVA_02067 0.69 +0.3 388,107 + BACOVA_02067 0.70 -1.0 388,135 + BACOVA_02067 0.71 -0.5 388,179 - BACOVA_02067 0.74 -0.2 388,196 - BACOVA_02067 0.75 -2.3 388,385 + BACOVA_02067 0.87 -2.9 388,386 - BACOVA_02067 0.87 -1.9 388,386 - BACOVA_02067 0.87 -0.1 388,386 - BACOVA_02067 0.87 -1.5 388,390 + BACOVA_02067 0.88 +0.6 388,429 + -0.4 388,448 + +0.6 388,500 - -0.6 388,505 + +0.4 388,505 + -0.9 388,506 - +1.3 388,506 - +0.3 388,506 - -0.2 388,506 - -1.6 388,506 - -1.3 388,508 - -1.7 388,550 + -1.1 388,551 - -0.3 388,551 - -0.4 388,551 - -1.4 388,574 + -0.7 388,579 + -2.1 388,601 + +0.8 388,652 + +1.0 388,663 - -1.0 388,672 + +0.2 388,677 - -1.2 388,702 + -2.1 388,808 - BACOVA_02068 0.25 -0.8 388,813 + BACOVA_02068 0.26 -0.5 388,814 - BACOVA_02068 0.26 -0.2 388,814 - BACOVA_02068 0.26 +0.1 388,864 + BACOVA_02068 0.35 -1.0 388,864 + BACOVA_02068 0.35 -0.1 388,896 + BACOVA_02068 0.41 -0.4 388,896 + BACOVA_02068 0.41 -2.8 388,897 - BACOVA_02068 0.41 +0.0 388,897 - BACOVA_02068 0.41 -0.1 388,897 - BACOVA_02068 0.41 +0.1 388,899 - BACOVA_02068 0.41 +0.4 388,899 - BACOVA_02068 0.41 -1.0 388,899 - BACOVA_02068 0.41 -0.2 389,031 - BACOVA_02068 0.65 -1.0 389,090 + BACOVA_02068 0.75 +0.6 389,091 - BACOVA_02068 0.75 -1.6 389,091 - BACOVA_02068 0.75 -0.8 389,099 - BACOVA_02068 0.77 +0.0 389,118 - BACOVA_02068 0.80 +0.4 389,231 - -2.6 389,237 + -0.7 389,255 + -0.3 389,270 - -1.3 389,271 + -2.3 389,272 - -0.4 389,315 + +0.9 389,387 - +0.1 389,397 + -1.8 389,398 - -0.5 389,399 + +0.0 389,413 + -3.0 389,437 + +0.6 389,437 + +1.0 389,438 - +1.0 389,469 + BACOVA_02069 0.11 +0.3 389,470 - BACOVA_02069 0.11 -0.5 389,506 + BACOVA_02069 0.17 -1.5 389,521 + BACOVA_02069 0.20 +1.5 389,552 + BACOVA_02069 0.26 +0.4 389,578 - BACOVA_02069 0.30 -1.9
Or see this region's nucleotide sequence