Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01467

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01465 and BACOVA_01466 are separated by 263 nucleotidesBACOVA_01466 and BACOVA_01467 are separated by 114 nucleotidesBACOVA_01467 and BACOVA_01468 are separated by 137 nucleotides BACOVA_01465: BACOVA_01465 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 123,248 to 124,783 _01465 BACOVA_01466: BACOVA_01466 - hypothetical protein, at 125,047 to 125,154 _01466 BACOVA_01467: BACOVA_01467 - thioredoxin, at 125,269 to 125,592 _01467 BACOVA_01468: BACOVA_01468 - nicotinate phosphoribosyltransferase, at 125,730 to 126,905 _01468 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.328 kb on + strand, within BACOVA_01465at 124.380 kb on - strand, within BACOVA_01465at 124.496 kb on - strand, within BACOVA_01465at 124.585 kb on - strand, within BACOVA_01465at 124.632 kb on + strandat 124.633 kb on - strandat 124.743 kb on - strandat 124.762 kb on + strandat 124.775 kb on + strandat 124.775 kb on + strandat 124.783 kb on + strandat 124.784 kb on - strandat 124.787 kb on + strandat 124.787 kb on + strandat 124.788 kb on - strandat 124.790 kb on + strandat 124.790 kb on + strandat 124.814 kb on + strandat 124.815 kb on - strandat 124.856 kb on + strandat 124.939 kb on + strandat 124.955 kb on + strandat 124.975 kb on + strandat 125.049 kb on - strandat 125.102 kb on + strand, within BACOVA_01466at 125.102 kb on + strand, within BACOVA_01466at 125.103 kb on - strand, within BACOVA_01466at 125.184 kb on + strandat 125.184 kb on + strandat 125.185 kb on - strandat 125.185 kb on - strandat 125.190 kb on - strandat 125.190 kb on - strandat 125.191 kb on + strandat 125.191 kb on + strandat 125.213 kb on + strandat 125.228 kb on - strandat 125.233 kb on + strandat 125.234 kb on - strandat 125.234 kb on - strandat 125.242 kb on - strandat 125.244 kb on + strandat 125.248 kb on + strandat 125.376 kb on + strand, within BACOVA_01467at 125.376 kb on + strand, within BACOVA_01467at 125.432 kb on + strand, within BACOVA_01467at 125.473 kb on + strand, within BACOVA_01467at 125.474 kb on - strand, within BACOVA_01467at 125.474 kb on - strand, within BACOVA_01467at 125.476 kb on - strand, within BACOVA_01467at 125.493 kb on + strand, within BACOVA_01467at 125.499 kb on + strand, within BACOVA_01467at 125.597 kb on + strandat 125.604 kb on + strandat 125.605 kb on - strandat 125.605 kb on - strandat 125.620 kb on + strandat 125.626 kb on + strandat 125.627 kb on - strandat 125.644 kb on + strandat 125.645 kb on - strandat 125.645 kb on - strandat 125.662 kb on - strandat 125.676 kb on + strandat 125.708 kb on + strandat 125.708 kb on + strandat 125.709 kb on - strandat 125.709 kb on - strandat 125.772 kb on + strandat 125.792 kb on + strandat 125.855 kb on + strand, within BACOVA_01468at 125.982 kb on - strand, within BACOVA_01468at 126.043 kb on + strand, within BACOVA_01468at 126.066 kb on - strand, within BACOVA_01468at 126.137 kb on + strand, within BACOVA_01468at 126.155 kb on + strand, within BACOVA_01468at 126.155 kb on + strand, within BACOVA_01468at 126.155 kb on + strand, within BACOVA_01468at 126.156 kb on - strand, within BACOVA_01468at 126.161 kb on + strand, within BACOVA_01468at 126.176 kb on + strand, within BACOVA_01468at 126.176 kb on + strand, within BACOVA_01468at 126.193 kb on + strand, within BACOVA_01468at 126.221 kb on + strand, within BACOVA_01468at 126.222 kb on - strand, within BACOVA_01468at 126.223 kb on + strand, within BACOVA_01468at 126.223 kb on + strand, within BACOVA_01468at 126.223 kb on + strand, within BACOVA_01468at 126.224 kb on - strand, within BACOVA_01468at 126.224 kb on - strand, within BACOVA_01468at 126.236 kb on + strand, within BACOVA_01468at 126.263 kb on + strand, within BACOVA_01468at 126.263 kb on + strand, within BACOVA_01468at 126.263 kb on + strand, within BACOVA_01468at 126.320 kb on + strand, within BACOVA_01468at 126.343 kb on + strand, within BACOVA_01468at 126.344 kb on - strand, within BACOVA_01468at 126.454 kb on - strand, within BACOVA_01468at 126.495 kb on + strand, within BACOVA_01468at 126.495 kb on + strand, within BACOVA_01468at 126.495 kb on + strand, within BACOVA_01468at 126.496 kb on - strand, within BACOVA_01468at 126.533 kb on + strand, within BACOVA_01468at 126.566 kb on + strand, within BACOVA_01468at 126.567 kb on - strand, within BACOVA_01468

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
remove
124,328 + BACOVA_01465 0.70 +0.4
124,380 - BACOVA_01465 0.74 -0.4
124,496 - BACOVA_01465 0.81 +0.9
124,585 - BACOVA_01465 0.87 -1.2
124,632 + -0.1
124,633 - -0.7
124,743 - +0.8
124,762 + -0.5
124,775 + +0.9
124,775 + -0.3
124,783 + +0.7
124,784 - +1.0
124,787 + +0.3
124,787 + +0.2
124,788 - -0.2
124,790 + +1.1
124,790 + +0.1
124,814 + +0.3
124,815 - -0.4
124,856 + +1.0
124,939 + +1.7
124,955 + +0.6
124,975 + -1.8
125,049 - -0.3
125,102 + BACOVA_01466 0.51 -1.3
125,102 + BACOVA_01466 0.51 -0.4
125,103 - BACOVA_01466 0.52 -1.7
125,184 + +0.4
125,184 + -0.3
125,185 - -2.7
125,185 - +0.0
125,190 - -0.3
125,190 - -0.1
125,191 + +0.9
125,191 + +1.0
125,213 + -0.1
125,228 - +0.7
125,233 + -0.3
125,234 - -2.3
125,234 - +0.9
125,242 - +0.4
125,244 + -1.2
125,248 + -0.1
125,376 + BACOVA_01467 0.33 +1.6
125,376 + BACOVA_01467 0.33 -1.5
125,432 + BACOVA_01467 0.50 -0.0
125,473 + BACOVA_01467 0.63 -1.8
125,474 - BACOVA_01467 0.63 +0.3
125,474 - BACOVA_01467 0.63 +1.5
125,476 - BACOVA_01467 0.64 +1.0
125,493 + BACOVA_01467 0.69 +1.2
125,499 + BACOVA_01467 0.71 +1.0
125,597 + +0.6
125,604 + -1.3
125,605 - -0.7
125,605 - -0.4
125,620 + -1.3
125,626 + +0.4
125,627 - -0.8
125,644 + -0.7
125,645 - -3.4
125,645 - -0.9
125,662 - +0.8
125,676 + +1.1
125,708 + -1.1
125,708 + -1.4
125,709 - +1.2
125,709 - -0.6
125,772 + +0.4
125,792 + -0.8
125,855 + BACOVA_01468 0.11 -0.5
125,982 - BACOVA_01468 0.21 -1.3
126,043 + BACOVA_01468 0.27 -0.6
126,066 - BACOVA_01468 0.29 -0.5
126,137 + BACOVA_01468 0.35 -0.3
126,155 + BACOVA_01468 0.36 +0.7
126,155 + BACOVA_01468 0.36 -1.0
126,155 + BACOVA_01468 0.36 -1.8
126,156 - BACOVA_01468 0.36 -0.5
126,161 + BACOVA_01468 0.37 +1.4
126,176 + BACOVA_01468 0.38 +0.4
126,176 + BACOVA_01468 0.38 -0.5
126,193 + BACOVA_01468 0.39 +0.3
126,221 + BACOVA_01468 0.42 -0.5
126,222 - BACOVA_01468 0.42 +1.7
126,223 + BACOVA_01468 0.42 -1.6
126,223 + BACOVA_01468 0.42 +0.1
126,223 + BACOVA_01468 0.42 +0.6
126,224 - BACOVA_01468 0.42 +0.5
126,224 - BACOVA_01468 0.42 -0.7
126,236 + BACOVA_01468 0.43 +1.4
126,263 + BACOVA_01468 0.45 +0.1
126,263 + BACOVA_01468 0.45 -1.1
126,263 + BACOVA_01468 0.45 +0.1
126,320 + BACOVA_01468 0.50 +0.2
126,343 + BACOVA_01468 0.52 +0.4
126,344 - BACOVA_01468 0.52 -0.8
126,454 - BACOVA_01468 0.62 -2.1
126,495 + BACOVA_01468 0.65 +2.0
126,495 + BACOVA_01468 0.65 -1.3
126,495 + BACOVA_01468 0.65 -0.7
126,496 - BACOVA_01468 0.65 +0.8
126,533 + BACOVA_01468 0.68 +0.2
126,566 + BACOVA_01468 0.71 +0.5
126,567 - BACOVA_01468 0.71 -0.9

Or see this region's nucleotide sequence