Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01250 and BACOVA_01251 are separated by 86 nucleotides BACOVA_01251 and BACOVA_01252 are separated by 174 nucleotides BACOVA_01252 and BACOVA_01253 are separated by 105 nucleotides
BACOVA_01250: BACOVA_01250 - sigma factor regulatory protein, FecR/PupR family, at 35,597 to 36,586
_01250
BACOVA_01251: BACOVA_01251 - RNA polymerase sigma-70 factor, at 36,673 to 37,296
_01251
BACOVA_01252: BACOVA_01252 - pirin family protein, at 37,471 to 38,175
_01252
BACOVA_01253: BACOVA_01253 - cytochrome C biogenesis protein transmembrane region, at 38,281 to 40,338
_01253
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.758 kb on + strand, within BACOVA_01250 at 35.759 kb on - strand, within BACOVA_01250 at 35.759 kb on - strand, within BACOVA_01250 at 35.794 kb on + strand, within BACOVA_01250 at 35.800 kb on + strand, within BACOVA_01250 at 35.806 kb on - strand, within BACOVA_01250 at 35.863 kb on + strand, within BACOVA_01250 at 35.866 kb on - strand, within BACOVA_01250 at 35.881 kb on + strand, within BACOVA_01250 at 35.887 kb on + strand, within BACOVA_01250 at 35.887 kb on + strand, within BACOVA_01250 at 35.887 kb on + strand, within BACOVA_01250 at 35.888 kb on - strand, within BACOVA_01250 at 35.948 kb on - strand, within BACOVA_01250 at 35.972 kb on + strand, within BACOVA_01250 at 35.973 kb on - strand, within BACOVA_01250 at 35.988 kb on + strand, within BACOVA_01250 at 35.989 kb on - strand, within BACOVA_01250 at 36.014 kb on + strand, within BACOVA_01250 at 36.015 kb on - strand, within BACOVA_01250 at 36.015 kb on - strand, within BACOVA_01250 at 36.253 kb on + strand, within BACOVA_01250 at 36.283 kb on + strand, within BACOVA_01250 at 36.291 kb on - strand, within BACOVA_01250 at 36.294 kb on - strand, within BACOVA_01250 at 36.359 kb on - strand, within BACOVA_01250 at 36.467 kb on + strand, within BACOVA_01250 at 36.467 kb on + strand, within BACOVA_01250 at 36.469 kb on + strand, within BACOVA_01250 at 36.490 kb on + strand at 36.490 kb on + strand at 36.491 kb on - strand at 36.529 kb on - strand at 36.529 kb on - strand at 36.571 kb on + strand at 36.587 kb on - strand at 36.595 kb on + strand at 36.598 kb on - strand at 36.598 kb on - strand at 36.607 kb on - strand at 36.625 kb on + strand at 36.629 kb on + strand at 36.629 kb on + strand at 36.630 kb on - strand at 36.632 kb on + strand at 36.653 kb on + strand at 36.691 kb on + strand at 36.692 kb on - strand at 36.703 kb on + strand at 36.718 kb on + strand at 36.725 kb on + strand at 36.726 kb on - strand at 36.737 kb on + strand, within BACOVA_01251 at 36.755 kb on - strand, within BACOVA_01251 at 36.768 kb on + strand, within BACOVA_01251 at 36.768 kb on + strand, within BACOVA_01251 at 36.783 kb on + strand, within BACOVA_01251 at 36.849 kb on + strand, within BACOVA_01251 at 36.875 kb on - strand, within BACOVA_01251 at 37.026 kb on + strand, within BACOVA_01251 at 37.027 kb on - strand, within BACOVA_01251 at 37.035 kb on + strand, within BACOVA_01251 at 37.036 kb on - strand, within BACOVA_01251 at 37.038 kb on + strand, within BACOVA_01251 at 37.039 kb on - strand, within BACOVA_01251 at 37.041 kb on - strand, within BACOVA_01251 at 37.097 kb on - strand, within BACOVA_01251 at 37.163 kb on + strand, within BACOVA_01251 at 37.179 kb on + strand, within BACOVA_01251 at 37.179 kb on + strand, within BACOVA_01251 at 37.191 kb on - strand, within BACOVA_01251 at 37.255 kb on + strand at 37.271 kb on + strand at 37.275 kb on + strand at 37.276 kb on - strand at 37.302 kb on + strand at 37.308 kb on + strand at 37.309 kb on - strand at 37.317 kb on - strand at 37.324 kb on + strand at 37.325 kb on - strand at 37.388 kb on + strand at 37.392 kb on + strand at 37.407 kb on - strand at 37.409 kb on + strand at 37.409 kb on + strand at 37.410 kb on - strand at 37.410 kb on - strand at 37.410 kb on - strand at 37.412 kb on + strand at 37.482 kb on - strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.559 kb on - strand, within BACOVA_01252 at 37.562 kb on - strand, within BACOVA_01252 at 37.593 kb on - strand, within BACOVA_01252 at 37.617 kb on - strand, within BACOVA_01252 at 37.688 kb on - strand, within BACOVA_01252 at 37.755 kb on + strand, within BACOVA_01252 at 37.824 kb on - strand, within BACOVA_01252 at 37.829 kb on + strand, within BACOVA_01252 at 37.830 kb on - strand, within BACOVA_01252 at 37.983 kb on + strand, within BACOVA_01252 at 38.001 kb on - strand, within BACOVA_01252 at 38.002 kb on + strand, within BACOVA_01252 at 38.002 kb on + strand, within BACOVA_01252 at 38.005 kb on - strand, within BACOVA_01252 at 38.031 kb on - strand, within BACOVA_01252 at 38.031 kb on - strand, within BACOVA_01252 at 38.032 kb on + strand, within BACOVA_01252 at 38.033 kb on - strand, within BACOVA_01252 at 38.034 kb on + strand, within BACOVA_01252 at 38.034 kb on + strand, within BACOVA_01252 at 38.035 kb on - strand, within BACOVA_01252 at 38.035 kb on - strand, within BACOVA_01252 at 38.035 kb on - strand, within BACOVA_01252 at 38.035 kb on - strand, within BACOVA_01252 at 38.094 kb on + strand, within BACOVA_01252 at 38.130 kb on + strand at 38.130 kb on + strand at 38.130 kb on + strand at 38.131 kb on - strand at 38.131 kb on - strand at 38.133 kb on - strand at 38.154 kb on - strand at 38.165 kb on + strand at 38.165 kb on + strand at 38.165 kb on + strand at 38.295 kb on + strand at 38.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 35,758 + BACOVA_01250 0.16 -2.1 35,759 - BACOVA_01250 0.16 +1.1 35,759 - BACOVA_01250 0.16 -2.1 35,794 + BACOVA_01250 0.20 +1.1 35,800 + BACOVA_01250 0.21 -0.4 35,806 - BACOVA_01250 0.21 -1.0 35,863 + BACOVA_01250 0.27 -0.2 35,866 - BACOVA_01250 0.27 +0.6 35,881 + BACOVA_01250 0.29 +0.6 35,887 + BACOVA_01250 0.29 +1.9 35,887 + BACOVA_01250 0.29 -0.6 35,887 + BACOVA_01250 0.29 +0.7 35,888 - BACOVA_01250 0.29 +0.5 35,948 - BACOVA_01250 0.35 -0.2 35,972 + BACOVA_01250 0.38 +1.5 35,973 - BACOVA_01250 0.38 -0.2 35,988 + BACOVA_01250 0.39 +0.9 35,989 - BACOVA_01250 0.40 -0.8 36,014 + BACOVA_01250 0.42 -1.7 36,015 - BACOVA_01250 0.42 -0.3 36,015 - BACOVA_01250 0.42 -1.0 36,253 + BACOVA_01250 0.66 +0.4 36,283 + BACOVA_01250 0.69 +1.2 36,291 - BACOVA_01250 0.70 +1.5 36,294 - BACOVA_01250 0.70 -2.3 36,359 - BACOVA_01250 0.77 -1.6 36,467 + BACOVA_01250 0.88 +0.3 36,467 + BACOVA_01250 0.88 -1.1 36,469 + BACOVA_01250 0.88 -0.2 36,490 + +0.4 36,490 + -0.6 36,491 - -1.2 36,529 - +1.7 36,529 - -1.5 36,571 + -0.4 36,587 - -0.6 36,595 + -0.2 36,598 - +0.4 36,598 - -0.8 36,607 - +1.2 36,625 + -0.6 36,629 + +0.4 36,629 + -0.5 36,630 - -1.2 36,632 + +1.5 36,653 + -0.8 36,691 + +1.0 36,692 - -0.2 36,703 + -0.7 36,718 + +0.0 36,725 + -0.5 36,726 - -1.1 36,737 + BACOVA_01251 0.10 -0.7 36,755 - BACOVA_01251 0.13 +0.2 36,768 + BACOVA_01251 0.15 +0.1 36,768 + BACOVA_01251 0.15 -0.2 36,783 + BACOVA_01251 0.18 -0.9 36,849 + BACOVA_01251 0.28 -0.8 36,875 - BACOVA_01251 0.32 +1.2 37,026 + BACOVA_01251 0.57 +0.7 37,027 - BACOVA_01251 0.57 -0.6 37,035 + BACOVA_01251 0.58 -1.5 37,036 - BACOVA_01251 0.58 -1.0 37,038 + BACOVA_01251 0.58 -0.9 37,039 - BACOVA_01251 0.59 -0.5 37,041 - BACOVA_01251 0.59 -0.9 37,097 - BACOVA_01251 0.68 +0.4 37,163 + BACOVA_01251 0.79 -1.3 37,179 + BACOVA_01251 0.81 +1.7 37,179 + BACOVA_01251 0.81 +1.1 37,191 - BACOVA_01251 0.83 -0.1 37,255 + -0.1 37,271 + +1.2 37,275 + -0.5 37,276 - -0.9 37,302 + +0.4 37,308 + +0.6 37,309 - -0.4 37,317 - -0.5 37,324 + -1.2 37,325 - +1.1 37,388 + -0.4 37,392 + +0.8 37,407 - +0.1 37,409 + -1.2 37,409 + -0.2 37,410 - +0.2 37,410 - -1.1 37,410 - +0.7 37,412 + -1.0 37,482 - +1.2 37,507 + -1.9 37,507 + -0.6 37,507 + -0.5 37,559 - BACOVA_01252 0.12 +1.4 37,562 - BACOVA_01252 0.13 -1.5 37,593 - BACOVA_01252 0.17 +0.1 37,617 - BACOVA_01252 0.21 +0.4 37,688 - BACOVA_01252 0.31 -0.8 37,755 + BACOVA_01252 0.40 -0.1 37,824 - BACOVA_01252 0.50 -0.4 37,829 + BACOVA_01252 0.51 +0.2 37,830 - BACOVA_01252 0.51 +0.4 37,983 + BACOVA_01252 0.73 +0.5 38,001 - BACOVA_01252 0.75 -0.5 38,002 + BACOVA_01252 0.75 +0.1 38,002 + BACOVA_01252 0.75 -0.6 38,005 - BACOVA_01252 0.76 -0.4 38,031 - BACOVA_01252 0.79 +2.5 38,031 - BACOVA_01252 0.79 -1.7 38,032 + BACOVA_01252 0.80 -0.7 38,033 - BACOVA_01252 0.80 +0.9 38,034 + BACOVA_01252 0.80 -1.2 38,034 + BACOVA_01252 0.80 +1.2 38,035 - BACOVA_01252 0.80 +0.1 38,035 - BACOVA_01252 0.80 +0.7 38,035 - BACOVA_01252 0.80 +0.1 38,035 - BACOVA_01252 0.80 -0.3 38,094 + BACOVA_01252 0.88 +0.5 38,130 + -0.2 38,130 + +0.9 38,130 + -0.6 38,131 - -0.2 38,131 - -1.5 38,133 - +0.3 38,154 - +0.4 38,165 + +1.0 38,165 + +0.4 38,165 + +0.1 38,295 + -1.3 38,296 - +0.5
Or see this region's nucleotide sequence