Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00584 and BACOVA_00585 are separated by 10 nucleotides BACOVA_00585 and BACOVA_00586 overlap by 26 nucleotides BACOVA_00586 and BACOVA_00587 are separated by 20 nucleotides BACOVA_00587 and BACOVA_00588 are separated by 21 nucleotides
BACOVA_00584: BACOVA_00584 - RyR domain protein, at 18,646 to 19,734
_00584
BACOVA_00585: BACOVA_00585 - RyR domain protein, at 19,745 to 20,050
_00585
BACOVA_00586: BACOVA_00586 - tetratricopeptide repeat protein, at 20,025 to 23,306
_00586
BACOVA_00587: BACOVA_00587 - hypothetical protein, at 23,327 to 23,995
_00587
BACOVA_00588: BACOVA_00588 - hypothetical protein, at 24,017 to 25,633
_00588
Position (kb) 20
21
22
23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 19.057 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.071 kb on - strand, within BACOVA_00584 at 19.113 kb on + strand, within BACOVA_00584 at 19.114 kb on - strand, within BACOVA_00584 at 19.134 kb on + strand, within BACOVA_00584 at 19.135 kb on - strand, within BACOVA_00584 at 19.148 kb on + strand, within BACOVA_00584 at 19.154 kb on - strand, within BACOVA_00584 at 19.167 kb on - strand, within BACOVA_00584 at 19.179 kb on - strand, within BACOVA_00584 at 19.252 kb on - strand, within BACOVA_00584 at 19.326 kb on + strand, within BACOVA_00584 at 19.505 kb on - strand, within BACOVA_00584 at 19.530 kb on + strand, within BACOVA_00584 at 19.542 kb on + strand, within BACOVA_00584 at 19.570 kb on + strand, within BACOVA_00584 at 19.572 kb on + strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.573 kb on - strand, within BACOVA_00584 at 19.576 kb on - strand, within BACOVA_00584 at 19.674 kb on + strand at 19.687 kb on + strand at 19.738 kb on - strand at 19.739 kb on + strand at 19.739 kb on + strand at 19.740 kb on - strand at 19.740 kb on - strand at 19.766 kb on + strand at 19.820 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 19.892 kb on + strand, within BACOVA_00585 at 20.049 kb on - strand at 20.076 kb on - strand at 20.076 kb on - strand at 20.122 kb on + strand at 20.122 kb on + strand at 20.136 kb on + strand at 20.186 kb on + strand at 20.303 kb on + strand at 20.339 kb on + strand at 20.397 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.496 kb on - strand, within BACOVA_00586 at 20.499 kb on + strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.500 kb on - strand, within BACOVA_00586 at 20.566 kb on - strand, within BACOVA_00586 at 20.571 kb on + strand, within BACOVA_00586 at 20.611 kb on - strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.619 kb on + strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.634 kb on - strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.635 kb on + strand, within BACOVA_00586 at 20.636 kb on - strand, within BACOVA_00586 at 20.640 kb on + strand, within BACOVA_00586 at 20.684 kb on + strand, within BACOVA_00586 at 20.694 kb on - strand, within BACOVA_00586 at 20.736 kb on + strand, within BACOVA_00586 at 20.816 kb on - strand, within BACOVA_00586 at 20.866 kb on + strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.867 kb on - strand, within BACOVA_00586 at 20.931 kb on - strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.932 kb on + strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.933 kb on - strand, within BACOVA_00586 at 20.998 kb on - strand, within BACOVA_00586 at 21.096 kb on + strand, within BACOVA_00586 at 21.111 kb on + strand, within BACOVA_00586 at 21.159 kb on + strand, within BACOVA_00586 at 21.160 kb on - strand, within BACOVA_00586 at 21.194 kb on - strand, within BACOVA_00586 at 21.194 kb on - strand, within BACOVA_00586 at 21.194 kb on - strand, within BACOVA_00586 at 21.209 kb on + strand, within BACOVA_00586 at 21.245 kb on - strand, within BACOVA_00586 at 21.245 kb on - strand, within BACOVA_00586 at 21.245 kb on - strand, within BACOVA_00586 at 21.266 kb on + strand, within BACOVA_00586 at 21.355 kb on + strand, within BACOVA_00586 at 21.355 kb on + strand, within BACOVA_00586 at 21.426 kb on - strand, within BACOVA_00586 at 21.426 kb on - strand, within BACOVA_00586 at 21.426 kb on - strand, within BACOVA_00586 at 21.429 kb on - strand, within BACOVA_00586 at 21.491 kb on + strand, within BACOVA_00586 at 21.527 kb on + strand, within BACOVA_00586 at 21.528 kb on - strand, within BACOVA_00586 at 21.528 kb on - strand, within BACOVA_00586 at 21.639 kb on - strand, within BACOVA_00586 at 21.639 kb on - strand, within BACOVA_00586 at 21.640 kb on + strand, within BACOVA_00586 at 21.640 kb on + strand, within BACOVA_00586 at 21.641 kb on - strand, within BACOVA_00586 at 21.673 kb on + strand, within BACOVA_00586 at 21.674 kb on - strand, within BACOVA_00586 at 21.676 kb on + strand, within BACOVA_00586 at 21.677 kb on - strand, within BACOVA_00586 at 21.677 kb on - strand, within BACOVA_00586 at 21.677 kb on - strand, within BACOVA_00586 at 21.709 kb on + strand, within BACOVA_00586 at 21.709 kb on + strand, within BACOVA_00586 at 21.774 kb on + strand, within BACOVA_00586 at 21.978 kb on + strand, within BACOVA_00586 at 22.016 kb on + strand, within BACOVA_00586 at 22.026 kb on - strand, within BACOVA_00586 at 22.026 kb on - strand, within BACOVA_00586 at 22.133 kb on - strand, within BACOVA_00586 at 22.165 kb on + strand, within BACOVA_00586 at 22.190 kb on + strand, within BACOVA_00586 at 22.190 kb on + strand, within BACOVA_00586 at 22.190 kb on + strand, within BACOVA_00586 at 22.207 kb on + strand, within BACOVA_00586 at 22.208 kb on - strand, within BACOVA_00586 at 22.244 kb on - strand, within BACOVA_00586 at 22.244 kb on - strand, within BACOVA_00586 at 22.360 kb on + strand, within BACOVA_00586 at 22.361 kb on - strand, within BACOVA_00586 at 22.372 kb on - strand, within BACOVA_00586 at 22.397 kb on + strand, within BACOVA_00586 at 22.446 kb on - strand, within BACOVA_00586 at 22.454 kb on + strand, within BACOVA_00586 at 22.454 kb on + strand, within BACOVA_00586 at 22.454 kb on + strand, within BACOVA_00586 at 22.455 kb on - strand, within BACOVA_00586 at 22.455 kb on - strand, within BACOVA_00586 at 22.455 kb on - strand, within BACOVA_00586 at 22.458 kb on + strand, within BACOVA_00586 at 22.459 kb on - strand, within BACOVA_00586 at 22.529 kb on + strand, within BACOVA_00586 at 22.555 kb on + strand, within BACOVA_00586 at 22.560 kb on + strand, within BACOVA_00586 at 22.561 kb on - strand, within BACOVA_00586 at 22.591 kb on + strand, within BACOVA_00586 at 22.670 kb on - strand, within BACOVA_00586 at 22.681 kb on - strand, within BACOVA_00586 at 22.689 kb on - strand, within BACOVA_00586 at 22.702 kb on + strand, within BACOVA_00586 at 22.703 kb on - strand, within BACOVA_00586 at 22.703 kb on - strand, within BACOVA_00586 at 22.703 kb on - strand, within BACOVA_00586 at 22.706 kb on - strand, within BACOVA_00586 at 22.760 kb on - strand, within BACOVA_00586 at 22.770 kb on - strand, within BACOVA_00586 at 22.779 kb on + strand, within BACOVA_00586 at 22.791 kb on + strand, within BACOVA_00586 at 22.792 kb on - strand, within BACOVA_00586 at 22.827 kb on + strand, within BACOVA_00586 at 22.827 kb on + strand, within BACOVA_00586 at 22.827 kb on + strand, within BACOVA_00586 at 22.832 kb on - strand, within BACOVA_00586 at 22.850 kb on + strand, within BACOVA_00586 at 22.857 kb on + strand, within BACOVA_00586 at 22.932 kb on - strand, within BACOVA_00586 at 22.932 kb on - strand, within BACOVA_00586 at 22.936 kb on + strand, within BACOVA_00586 at 22.991 kb on - strand at 22.998 kb on - strand at 23.047 kb on + strand at 23.048 kb on - strand at 23.053 kb on - strand at 23.146 kb on + strand at 23.147 kb on - strand at 23.148 kb on + strand at 23.148 kb on + strand at 23.148 kb on + strand at 23.149 kb on - strand at 23.149 kb on - strand at 23.175 kb on - strand at 23.198 kb on + strand at 23.199 kb on - strand at 23.229 kb on + strand at 23.229 kb on + strand at 23.229 kb on + strand at 23.229 kb on + strand at 23.257 kb on + strand at 23.272 kb on - strand at 23.272 kb on - strand at 23.283 kb on + strand at 23.289 kb on + strand at 23.289 kb on + strand at 23.306 kb on + strand at 23.308 kb on + strand at 23.309 kb on - strand at 23.309 kb on - strand at 23.312 kb on - strand at 23.334 kb on - strand at 23.368 kb on + strand at 23.455 kb on + strand, within BACOVA_00587 at 23.615 kb on + strand, within BACOVA_00587 at 23.615 kb on + strand, within BACOVA_00587 at 23.615 kb on + strand, within BACOVA_00587 at 23.616 kb on - strand, within BACOVA_00587 at 23.616 kb on - strand, within BACOVA_00587 at 23.622 kb on - strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.670 kb on + strand, within BACOVA_00587 at 23.671 kb on - strand, within BACOVA_00587 at 23.671 kb on - strand, within BACOVA_00587 at 23.671 kb on - strand, within BACOVA_00587 at 23.727 kb on + strand, within BACOVA_00587 at 24.025 kb on + strand at 24.031 kb on + strand at 24.031 kb on + strand at 24.032 kb on - strand at 24.067 kb on + strand at 24.072 kb on + strand at 24.072 kb on + strand at 24.072 kb on + strand at 24.073 kb on - strand at 24.081 kb on - strand at 24.081 kb on - strand at 24.086 kb on - strand at 24.141 kb on - strand at 24.204 kb on + strand, within BACOVA_00588 at 24.205 kb on - strand, within BACOVA_00588 at 24.223 kb on + strand, within BACOVA_00588 at 24.224 kb on - strand, within BACOVA_00588 at 24.224 kb on - strand, within BACOVA_00588 at 24.255 kb on + strand, within BACOVA_00588 at 24.257 kb on + strand, within BACOVA_00588 at 24.258 kb on - strand, within BACOVA_00588
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 19,057 - BACOVA_00584 0.38 -1.3 19,071 - BACOVA_00584 0.39 -2.0 19,071 - BACOVA_00584 0.39 +0.2 19,113 + BACOVA_00584 0.43 +0.8 19,114 - BACOVA_00584 0.43 +1.0 19,134 + BACOVA_00584 0.45 +0.0 19,135 - BACOVA_00584 0.45 -2.2 19,148 + BACOVA_00584 0.46 +0.9 19,154 - BACOVA_00584 0.47 +1.1 19,167 - BACOVA_00584 0.48 -0.2 19,179 - BACOVA_00584 0.49 -0.7 19,252 - BACOVA_00584 0.56 +0.0 19,326 + BACOVA_00584 0.62 -1.4 19,505 - BACOVA_00584 0.79 +0.9 19,530 + BACOVA_00584 0.81 +0.9 19,542 + BACOVA_00584 0.82 -1.3 19,570 + BACOVA_00584 0.85 -1.7 19,572 + BACOVA_00584 0.85 +1.3 19,573 - BACOVA_00584 0.85 -1.3 19,573 - BACOVA_00584 0.85 +0.3 19,576 - BACOVA_00584 0.85 -0.3 19,674 + +0.1 19,687 + -0.6 19,738 - -0.1 19,739 + +1.5 19,739 + +0.1 19,740 - -1.5 19,740 - -2.0 19,766 + -1.0 19,820 + BACOVA_00585 0.25 -1.3 19,892 + BACOVA_00585 0.48 -1.1 19,892 + BACOVA_00585 0.48 +0.7 20,049 - +0.5 20,076 - +0.7 20,076 - -0.2 20,122 + -0.5 20,122 + +0.3 20,136 + -1.1 20,186 + -2.8 20,303 + +0.4 20,339 + +0.3 20,397 - BACOVA_00586 0.11 +1.7 20,496 - BACOVA_00586 0.14 +0.3 20,496 - BACOVA_00586 0.14 +0.1 20,496 - BACOVA_00586 0.14 -0.4 20,499 + BACOVA_00586 0.14 +0.4 20,500 - BACOVA_00586 0.14 -1.1 20,500 - BACOVA_00586 0.14 -2.6 20,566 - BACOVA_00586 0.16 -0.1 20,571 + BACOVA_00586 0.17 +0.3 20,611 - BACOVA_00586 0.18 +0.5 20,619 + BACOVA_00586 0.18 -0.7 20,619 + BACOVA_00586 0.18 +0.7 20,619 + BACOVA_00586 0.18 +1.5 20,634 - BACOVA_00586 0.19 +0.1 20,634 - BACOVA_00586 0.19 -0.1 20,635 + BACOVA_00586 0.19 +1.9 20,635 + BACOVA_00586 0.19 -1.0 20,636 - BACOVA_00586 0.19 -0.5 20,640 + BACOVA_00586 0.19 +1.2 20,684 + BACOVA_00586 0.20 +0.7 20,694 - BACOVA_00586 0.20 +1.3 20,736 + BACOVA_00586 0.22 -1.2 20,816 - BACOVA_00586 0.24 -0.7 20,866 + BACOVA_00586 0.26 +0.7 20,867 - BACOVA_00586 0.26 -1.2 20,867 - BACOVA_00586 0.26 -1.2 20,867 - BACOVA_00586 0.26 +0.7 20,931 - BACOVA_00586 0.28 +0.5 20,932 + BACOVA_00586 0.28 -1.0 20,932 + BACOVA_00586 0.28 +0.2 20,932 + BACOVA_00586 0.28 -1.7 20,932 + BACOVA_00586 0.28 -1.8 20,933 - BACOVA_00586 0.28 +0.3 20,933 - BACOVA_00586 0.28 -0.5 20,933 - BACOVA_00586 0.28 +0.4 20,998 - BACOVA_00586 0.30 +0.4 21,096 + BACOVA_00586 0.33 -0.1 21,111 + BACOVA_00586 0.33 +1.0 21,159 + BACOVA_00586 0.35 -0.5 21,160 - BACOVA_00586 0.35 -0.5 21,194 - BACOVA_00586 0.36 -0.1 21,194 - BACOVA_00586 0.36 -0.2 21,194 - BACOVA_00586 0.36 -0.9 21,209 + BACOVA_00586 0.36 -0.8 21,245 - BACOVA_00586 0.37 +0.5 21,245 - BACOVA_00586 0.37 +0.2 21,245 - BACOVA_00586 0.37 +0.5 21,266 + BACOVA_00586 0.38 +0.9 21,355 + BACOVA_00586 0.41 -1.1 21,355 + BACOVA_00586 0.41 -0.9 21,426 - BACOVA_00586 0.43 -0.7 21,426 - BACOVA_00586 0.43 +0.5 21,426 - BACOVA_00586 0.43 +0.5 21,429 - BACOVA_00586 0.43 +0.0 21,491 + BACOVA_00586 0.45 -0.3 21,527 + BACOVA_00586 0.46 +0.9 21,528 - BACOVA_00586 0.46 -0.5 21,528 - BACOVA_00586 0.46 -0.5 21,639 - BACOVA_00586 0.49 +0.7 21,639 - BACOVA_00586 0.49 +2.5 21,640 + BACOVA_00586 0.49 -0.1 21,640 + BACOVA_00586 0.49 +0.6 21,641 - BACOVA_00586 0.49 +0.6 21,673 + BACOVA_00586 0.50 -0.1 21,674 - BACOVA_00586 0.50 +0.1 21,676 + BACOVA_00586 0.50 -0.7 21,677 - BACOVA_00586 0.50 +0.6 21,677 - BACOVA_00586 0.50 -0.2 21,677 - BACOVA_00586 0.50 -0.8 21,709 + BACOVA_00586 0.51 -0.5 21,709 + BACOVA_00586 0.51 -0.9 21,774 + BACOVA_00586 0.53 -1.6 21,978 + BACOVA_00586 0.60 -0.3 22,016 + BACOVA_00586 0.61 +0.6 22,026 - BACOVA_00586 0.61 +0.3 22,026 - BACOVA_00586 0.61 -3.8 22,133 - BACOVA_00586 0.64 +0.7 22,165 + BACOVA_00586 0.65 +0.4 22,190 + BACOVA_00586 0.66 +0.1 22,190 + BACOVA_00586 0.66 +0.4 22,190 + BACOVA_00586 0.66 +0.7 22,207 + BACOVA_00586 0.66 -0.3 22,208 - BACOVA_00586 0.67 -0.1 22,244 - BACOVA_00586 0.68 -1.4 22,244 - BACOVA_00586 0.68 -1.2 22,360 + BACOVA_00586 0.71 +0.1 22,361 - BACOVA_00586 0.71 -0.3 22,372 - BACOVA_00586 0.72 -0.0 22,397 + BACOVA_00586 0.72 +0.7 22,446 - BACOVA_00586 0.74 -1.1 22,454 + BACOVA_00586 0.74 -1.1 22,454 + BACOVA_00586 0.74 +0.2 22,454 + BACOVA_00586 0.74 +1.0 22,455 - BACOVA_00586 0.74 -1.5 22,455 - BACOVA_00586 0.74 +1.2 22,455 - BACOVA_00586 0.74 -0.4 22,458 + BACOVA_00586 0.74 -0.2 22,459 - BACOVA_00586 0.74 +0.3 22,529 + BACOVA_00586 0.76 -0.6 22,555 + BACOVA_00586 0.77 +1.3 22,560 + BACOVA_00586 0.77 +0.5 22,561 - BACOVA_00586 0.77 -1.2 22,591 + BACOVA_00586 0.78 -0.8 22,670 - BACOVA_00586 0.81 -1.1 22,681 - BACOVA_00586 0.81 +0.1 22,689 - BACOVA_00586 0.81 -1.4 22,702 + BACOVA_00586 0.82 +0.3 22,703 - BACOVA_00586 0.82 -1.1 22,703 - BACOVA_00586 0.82 +0.0 22,703 - BACOVA_00586 0.82 +0.9 22,706 - BACOVA_00586 0.82 +0.0 22,760 - BACOVA_00586 0.83 -0.6 22,770 - BACOVA_00586 0.84 -1.4 22,779 + BACOVA_00586 0.84 -1.8 22,791 + BACOVA_00586 0.84 -1.3 22,792 - BACOVA_00586 0.84 +0.4 22,827 + BACOVA_00586 0.85 +0.4 22,827 + BACOVA_00586 0.85 +0.7 22,827 + BACOVA_00586 0.85 -0.4 22,832 - BACOVA_00586 0.86 +1.7 22,850 + BACOVA_00586 0.86 -0.2 22,857 + BACOVA_00586 0.86 -1.4 22,932 - BACOVA_00586 0.89 +0.1 22,932 - BACOVA_00586 0.89 +1.0 22,936 + BACOVA_00586 0.89 -0.1 22,991 - -0.5 22,998 - -2.1 23,047 + +1.6 23,048 - -0.3 23,053 - -0.6 23,146 + -2.8 23,147 - +1.1 23,148 + -0.3 23,148 + +1.1 23,148 + -1.7 23,149 - -2.0 23,149 - -1.7 23,175 - +2.1 23,198 + -1.1 23,199 - +0.0 23,229 + +0.4 23,229 + +0.6 23,229 + -2.0 23,229 + -1.6 23,257 + -1.0 23,272 - -1.9 23,272 - +0.3 23,283 + +1.3 23,289 + +1.7 23,289 + -0.3 23,306 + -2.5 23,308 + -0.8 23,309 - +0.3 23,309 - -0.2 23,312 - +0.9 23,334 - +0.1 23,368 + +1.1 23,455 + BACOVA_00587 0.19 +0.5 23,615 + BACOVA_00587 0.43 -1.1 23,615 + BACOVA_00587 0.43 -0.9 23,615 + BACOVA_00587 0.43 -0.7 23,616 - BACOVA_00587 0.43 +0.9 23,616 - BACOVA_00587 0.43 -0.6 23,622 - BACOVA_00587 0.44 +0.7 23,670 + BACOVA_00587 0.51 +0.7 23,670 + BACOVA_00587 0.51 +0.2 23,670 + BACOVA_00587 0.51 -0.2 23,670 + BACOVA_00587 0.51 +0.1 23,671 - BACOVA_00587 0.51 +1.6 23,671 - BACOVA_00587 0.51 +0.7 23,671 - BACOVA_00587 0.51 +0.3 23,727 + BACOVA_00587 0.60 -0.3 24,025 + +0.1 24,031 + -0.8 24,031 + -0.4 24,032 - -1.8 24,067 + -0.0 24,072 + -0.7 24,072 + -0.4 24,072 + -0.9 24,073 - +1.3 24,081 - +0.6 24,081 - -1.0 24,086 - +0.7 24,141 - +0.1 24,204 + BACOVA_00588 0.12 -1.0 24,205 - BACOVA_00588 0.12 -1.4 24,223 + BACOVA_00588 0.13 -1.1 24,224 - BACOVA_00588 0.13 -0.7 24,224 - BACOVA_00588 0.13 +0.4 24,255 + BACOVA_00588 0.15 -0.5 24,257 + BACOVA_00588 0.15 -0.1 24,258 - BACOVA_00588 0.15 -0.5
Or see this region's nucleotide sequence