Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00521 and BACOVA_00522 are separated by 6 nucleotides BACOVA_00522 and BACOVA_00523 are separated by 275 nucleotides BACOVA_00523 and BACOVA_00524 are separated by 65 nucleotides BACOVA_00524 and BACOVA_00525 are separated by 28 nucleotides
BACOVA_00521: BACOVA_00521 - hypothetical protein, at 20,301 to 21,728
_00521
BACOVA_00522: BACOVA_00522 - hypothetical protein, at 21,735 to 21,881
_00522
BACOVA_00523: BACOVA_00523 - tRNA-Ser, at 22,157 to 22,243
_00523
BACOVA_00524: BACOVA_00524 - tRNA-Glu, at 22,309 to 22,380
_00524
BACOVA_00525: BACOVA_00525 - hypothetical protein, at 22,409 to 23,230
_00525
Position (kb)
21
22 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 20.745 kb on - strand, within BACOVA_00521 at 20.745 kb on - strand, within BACOVA_00521 at 20.774 kb on + strand, within BACOVA_00521 at 20.846 kb on + strand, within BACOVA_00521 at 20.946 kb on - strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.994 kb on - strand, within BACOVA_00521 at 20.996 kb on - strand, within BACOVA_00521 at 21.050 kb on + strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.134 kb on - strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.255 kb on - strand, within BACOVA_00521 at 21.292 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.336 kb on + strand, within BACOVA_00521 at 21.419 kb on - strand, within BACOVA_00521 at 21.446 kb on + strand, within BACOVA_00521 at 21.496 kb on - strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.553 kb on + strand, within BACOVA_00521 at 21.554 kb on - strand, within BACOVA_00521 at 21.569 kb on - strand, within BACOVA_00521 at 21.569 kb on - strand, within BACOVA_00521 at 21.600 kb on + strand at 21.600 kb on + strand at 21.601 kb on - strand at 21.601 kb on - strand at 21.614 kb on - strand at 21.639 kb on + strand at 21.650 kb on - strand at 21.851 kb on + strand, within BACOVA_00522 at 21.855 kb on + strand, within BACOVA_00522 at 21.888 kb on + strand at 21.917 kb on - strand at 21.934 kb on + strand at 21.943 kb on + strand at 22.043 kb on - strand at 22.050 kb on + strand at 22.051 kb on - strand at 22.257 kb on + strand at 22.258 kb on - strand at 22.277 kb on - strand at 22.292 kb on + strand at 22.298 kb on + strand at 22.299 kb on - strand at 22.352 kb on + strand, within BACOVA_00524 at 22.353 kb on - strand, within BACOVA_00524 at 22.380 kb on - strand at 22.406 kb on + strand at 22.410 kb on + strand at 22.410 kb on + strand at 22.431 kb on + strand at 22.518 kb on + strand, within BACOVA_00525 at 22.518 kb on + strand, within BACOVA_00525 at 22.518 kb on + strand, within BACOVA_00525 at 22.519 kb on - strand, within BACOVA_00525 at 22.519 kb on - strand, within BACOVA_00525 at 22.552 kb on - strand, within BACOVA_00525 at 22.552 kb on - strand, within BACOVA_00525 at 22.555 kb on + strand, within BACOVA_00525 at 22.556 kb on - strand, within BACOVA_00525 at 22.645 kb on + strand, within BACOVA_00525 at 22.646 kb on - strand, within BACOVA_00525 at 22.673 kb on + strand, within BACOVA_00525 at 22.683 kb on + strand, within BACOVA_00525 at 22.684 kb on - strand, within BACOVA_00525 at 22.684 kb on - strand, within BACOVA_00525 at 22.687 kb on + strand, within BACOVA_00525 at 22.688 kb on - strand, within BACOVA_00525 at 22.715 kb on + strand, within BACOVA_00525 at 22.778 kb on - strand, within BACOVA_00525 at 22.780 kb on - strand, within BACOVA_00525 at 22.806 kb on + strand, within BACOVA_00525 at 22.820 kb on - strand, within BACOVA_00525 at 22.820 kb on - strand, within BACOVA_00525 at 22.820 kb on - strand, within BACOVA_00525 at 22.861 kb on + strand, within BACOVA_00525 at 22.861 kb on + strand, within BACOVA_00525
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 20,745 - BACOVA_00521 0.31 +1.9 20,745 - BACOVA_00521 0.31 -0.6 20,774 + BACOVA_00521 0.33 +0.6 20,846 + BACOVA_00521 0.38 -1.1 20,946 - BACOVA_00521 0.45 -1.9 20,993 + BACOVA_00521 0.48 +0.9 20,993 + BACOVA_00521 0.48 -0.9 20,994 - BACOVA_00521 0.49 -0.3 20,996 - BACOVA_00521 0.49 +0.4 21,050 + BACOVA_00521 0.52 +0.4 21,076 - BACOVA_00521 0.54 -0.4 21,076 - BACOVA_00521 0.54 +0.6 21,076 - BACOVA_00521 0.54 -2.0 21,134 - BACOVA_00521 0.58 -2.6 21,254 + BACOVA_00521 0.67 +1.1 21,254 + BACOVA_00521 0.67 +0.9 21,255 - BACOVA_00521 0.67 -1.1 21,292 + BACOVA_00521 0.69 -0.3 21,319 + BACOVA_00521 0.71 +1.6 21,319 + BACOVA_00521 0.71 +0.0 21,320 - BACOVA_00521 0.71 +0.3 21,320 - BACOVA_00521 0.71 +0.3 21,336 + BACOVA_00521 0.72 -0.6 21,419 - BACOVA_00521 0.78 -1.1 21,446 + BACOVA_00521 0.80 +1.1 21,496 - BACOVA_00521 0.84 -1.3 21,497 + BACOVA_00521 0.84 -0.5 21,497 + BACOVA_00521 0.84 +2.1 21,497 + BACOVA_00521 0.84 -0.8 21,498 - BACOVA_00521 0.84 +1.9 21,498 - BACOVA_00521 0.84 -0.5 21,498 - BACOVA_00521 0.84 +0.6 21,553 + BACOVA_00521 0.88 +4.4 21,554 - BACOVA_00521 0.88 -0.6 21,569 - BACOVA_00521 0.89 +1.4 21,569 - BACOVA_00521 0.89 -1.9 21,600 + +1.6 21,600 + -1.9 21,601 - +0.4 21,601 - +0.1 21,614 - -0.0 21,639 + +2.4 21,650 - +0.5 21,851 + BACOVA_00522 0.79 +0.9 21,855 + BACOVA_00522 0.82 +0.9 21,888 + +0.2 21,917 - -0.4 21,934 + +1.0 21,943 + -3.2 22,043 - +0.9 22,050 + +1.3 22,051 - +0.9 22,257 + -0.6 22,258 - +0.4 22,277 - -0.0 22,292 + +1.1 22,298 + +1.4 22,299 - +0.3 22,352 + BACOVA_00524 0.60 -1.3 22,353 - BACOVA_00524 0.61 +0.7 22,380 - +1.7 22,406 + +0.3 22,410 + +0.4 22,410 + -0.1 22,431 + -0.9 22,518 + BACOVA_00525 0.13 +2.2 22,518 + BACOVA_00525 0.13 -3.0 22,518 + BACOVA_00525 0.13 +0.1 22,519 - BACOVA_00525 0.13 +1.1 22,519 - BACOVA_00525 0.13 +1.3 22,552 - BACOVA_00525 0.17 +0.9 22,552 - BACOVA_00525 0.17 -0.1 22,555 + BACOVA_00525 0.18 +0.1 22,556 - BACOVA_00525 0.18 -0.8 22,645 + BACOVA_00525 0.29 -0.0 22,646 - BACOVA_00525 0.29 -1.5 22,673 + BACOVA_00525 0.32 +0.3 22,683 + BACOVA_00525 0.33 +1.0 22,684 - BACOVA_00525 0.33 -0.5 22,684 - BACOVA_00525 0.33 +1.2 22,687 + BACOVA_00525 0.34 -1.7 22,688 - BACOVA_00525 0.34 -0.9 22,715 + BACOVA_00525 0.37 +0.0 22,778 - BACOVA_00525 0.45 -0.4 22,780 - BACOVA_00525 0.45 -1.5 22,806 + BACOVA_00525 0.48 -0.1 22,820 - BACOVA_00525 0.50 -0.6 22,820 - BACOVA_00525 0.50 -1.9 22,820 - BACOVA_00525 0.50 -1.0 22,861 + BACOVA_00525 0.55 -0.9 22,861 + BACOVA_00525 0.55 -0.6
Or see this region's nucleotide sequence