Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00350

Experiment: D-Glucosamine Hydrochloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00349 and BACOVA_00350 are separated by 90 nucleotidesBACOVA_00350 and BACOVA_00351 are separated by 90 nucleotidesBACOVA_00351 and BACOVA_00352 are separated by 15 nucleotidesBACOVA_00352 and BACOVA_00353 are separated by 73 nucleotides BACOVA_00349: BACOVA_00349 - hypothetical protein, at 29,937 to 32,282 _00349 BACOVA_00350: BACOVA_00350 - tryptophan--tRNA ligase, at 32,373 to 33,467 _00350 BACOVA_00351: BACOVA_00351 - hypothetical protein, at 33,558 to 33,686 _00351 BACOVA_00352: BACOVA_00352 - hypothetical protein, at 33,702 to 33,821 _00352 BACOVA_00353: BACOVA_00353 - carbamoyl-phosphate synthase, large subunit, at 33,895 to 37,116 _00353 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 31.400 kb on + strand, within BACOVA_00349at 31.401 kb on - strand, within BACOVA_00349at 31.401 kb on - strand, within BACOVA_00349at 31.402 kb on + strand, within BACOVA_00349at 31.404 kb on + strand, within BACOVA_00349at 31.404 kb on + strand, within BACOVA_00349at 31.404 kb on + strand, within BACOVA_00349at 31.404 kb on + strand, within BACOVA_00349at 31.404 kb on + strand, within BACOVA_00349at 31.405 kb on - strand, within BACOVA_00349at 31.405 kb on - strand, within BACOVA_00349at 31.406 kb on + strand, within BACOVA_00349at 31.407 kb on - strand, within BACOVA_00349at 31.407 kb on - strand, within BACOVA_00349at 31.415 kb on - strand, within BACOVA_00349at 31.522 kb on - strand, within BACOVA_00349at 31.524 kb on - strand, within BACOVA_00349at 31.524 kb on - strand, within BACOVA_00349at 31.539 kb on - strand, within BACOVA_00349at 31.594 kb on + strand, within BACOVA_00349at 31.605 kb on + strand, within BACOVA_00349at 31.606 kb on - strand, within BACOVA_00349at 31.606 kb on - strand, within BACOVA_00349at 31.606 kb on - strand, within BACOVA_00349at 31.609 kb on - strand, within BACOVA_00349at 31.617 kb on - strand, within BACOVA_00349at 31.649 kb on + strand, within BACOVA_00349at 31.749 kb on + strand, within BACOVA_00349at 31.752 kb on - strand, within BACOVA_00349at 31.752 kb on - strand, within BACOVA_00349at 31.756 kb on + strand, within BACOVA_00349at 31.756 kb on + strand, within BACOVA_00349at 31.756 kb on + strand, within BACOVA_00349at 31.757 kb on - strand, within BACOVA_00349at 31.773 kb on - strand, within BACOVA_00349at 31.780 kb on + strand, within BACOVA_00349at 31.781 kb on - strand, within BACOVA_00349at 31.782 kb on + strand, within BACOVA_00349at 31.782 kb on + strand, within BACOVA_00349at 31.783 kb on - strand, within BACOVA_00349at 31.783 kb on - strand, within BACOVA_00349at 31.790 kb on - strand, within BACOVA_00349at 31.790 kb on - strand, within BACOVA_00349at 31.793 kb on + strand, within BACOVA_00349at 31.794 kb on - strand, within BACOVA_00349at 31.794 kb on - strand, within BACOVA_00349at 31.794 kb on - strand, within BACOVA_00349at 31.795 kb on + strand, within BACOVA_00349at 31.796 kb on - strand, within BACOVA_00349at 31.867 kb on + strand, within BACOVA_00349at 31.867 kb on + strand, within BACOVA_00349at 31.874 kb on + strand, within BACOVA_00349at 31.874 kb on + strand, within BACOVA_00349at 31.876 kb on + strand, within BACOVA_00349at 31.877 kb on - strand, within BACOVA_00349at 31.881 kb on + strand, within BACOVA_00349at 31.882 kb on - strand, within BACOVA_00349at 31.882 kb on - strand, within BACOVA_00349at 31.897 kb on - strand, within BACOVA_00349at 31.899 kb on + strand, within BACOVA_00349at 31.900 kb on - strand, within BACOVA_00349at 31.904 kb on - strand, within BACOVA_00349at 31.906 kb on - strand, within BACOVA_00349at 31.931 kb on + strand, within BACOVA_00349at 31.936 kb on - strand, within BACOVA_00349at 31.943 kb on + strand, within BACOVA_00349at 31.975 kb on + strand, within BACOVA_00349at 31.976 kb on - strand, within BACOVA_00349at 31.976 kb on - strand, within BACOVA_00349at 32.040 kb on - strand, within BACOVA_00349at 32.141 kb on - strandat 32.165 kb on + strandat 32.185 kb on + strandat 32.185 kb on + strandat 32.210 kb on - strandat 32.210 kb on - strandat 32.216 kb on - strandat 32.216 kb on - strandat 32.248 kb on + strandat 32.249 kb on - strandat 32.281 kb on - strandat 32.293 kb on - strandat 32.296 kb on + strandat 32.300 kb on - strandat 32.302 kb on - strandat 32.324 kb on + strandat 32.341 kb on - strandat 32.341 kb on - strandat 32.341 kb on - strandat 32.347 kb on + strandat 32.347 kb on + strandat 32.348 kb on - strandat 32.374 kb on + strandat 32.410 kb on - strandat 33.481 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.486 kb on - strandat 33.509 kb on - strandat 33.523 kb on - strandat 33.559 kb on + strandat 33.560 kb on - strandat 33.565 kb on - strandat 33.580 kb on - strand, within BACOVA_00351at 33.588 kb on - strand, within BACOVA_00351at 33.667 kb on + strand, within BACOVA_00351at 33.725 kb on + strand, within BACOVA_00352at 33.726 kb on - strand, within BACOVA_00352at 33.732 kb on + strand, within BACOVA_00352at 33.737 kb on - strand, within BACOVA_00352at 33.876 kb on + strandat 33.879 kb on + strandat 33.879 kb on + strandat 34.012 kb on - strandat 34.012 kb on - strandat 34.012 kb on - strandat 34.023 kb on - strandat 34.081 kb on + strandat 34.081 kb on + strandat 34.081 kb on + strandat 34.103 kb on - strandat 34.196 kb on - strandat 34.196 kb on - strandat 34.239 kb on + strand, within BACOVA_00353at 34.239 kb on + strand, within BACOVA_00353at 34.240 kb on - strand, within BACOVA_00353at 34.254 kb on + strand, within BACOVA_00353at 34.261 kb on + strand, within BACOVA_00353at 34.262 kb on - strand, within BACOVA_00353at 34.262 kb on - strand, within BACOVA_00353at 34.391 kb on + strand, within BACOVA_00353at 34.392 kb on - strand, within BACOVA_00353at 34.392 kb on - strand, within BACOVA_00353

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C)
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31,400 + BACOVA_00349 0.62 -1.1
31,401 - BACOVA_00349 0.62 -0.4
31,401 - BACOVA_00349 0.62 +1.1
31,402 + BACOVA_00349 0.62 +0.4
31,404 + BACOVA_00349 0.63 -0.7
31,404 + BACOVA_00349 0.63 -0.2
31,404 + BACOVA_00349 0.63 -1.2
31,404 + BACOVA_00349 0.63 +0.4
31,404 + BACOVA_00349 0.63 +0.2
31,405 - BACOVA_00349 0.63 -2.1
31,405 - BACOVA_00349 0.63 +0.3
31,406 + BACOVA_00349 0.63 +0.0
31,407 - BACOVA_00349 0.63 -0.6
31,407 - BACOVA_00349 0.63 -1.2
31,415 - BACOVA_00349 0.63 +0.7
31,522 - BACOVA_00349 0.68 -0.4
31,524 - BACOVA_00349 0.68 -1.0
31,524 - BACOVA_00349 0.68 +0.9
31,539 - BACOVA_00349 0.68 -1.9
31,594 + BACOVA_00349 0.71 +1.6
31,605 + BACOVA_00349 0.71 +1.6
31,606 - BACOVA_00349 0.71 -0.4
31,606 - BACOVA_00349 0.71 +0.4
31,606 - BACOVA_00349 0.71 -1.1
31,609 - BACOVA_00349 0.71 -0.4
31,617 - BACOVA_00349 0.72 -1.0
31,649 + BACOVA_00349 0.73 -0.2
31,749 + BACOVA_00349 0.77 +0.3
31,752 - BACOVA_00349 0.77 +0.0
31,752 - BACOVA_00349 0.77 -0.8
31,756 + BACOVA_00349 0.78 -1.2
31,756 + BACOVA_00349 0.78 -0.7
31,756 + BACOVA_00349 0.78 -3.2
31,757 - BACOVA_00349 0.78 +0.1
31,773 - BACOVA_00349 0.78 -0.9
31,780 + BACOVA_00349 0.79 -0.4
31,781 - BACOVA_00349 0.79 -0.1
31,782 + BACOVA_00349 0.79 -0.2
31,782 + BACOVA_00349 0.79 -0.8
31,783 - BACOVA_00349 0.79 -1.0
31,783 - BACOVA_00349 0.79 -1.9
31,790 - BACOVA_00349 0.79 -2.4
31,790 - BACOVA_00349 0.79 +1.1
31,793 + BACOVA_00349 0.79 -0.2
31,794 - BACOVA_00349 0.79 -2.1
31,794 - BACOVA_00349 0.79 -0.6
31,794 - BACOVA_00349 0.79 -0.7
31,795 + BACOVA_00349 0.79 +0.4
31,796 - BACOVA_00349 0.79 +0.7
31,867 + BACOVA_00349 0.82 +1.6
31,867 + BACOVA_00349 0.82 -0.9
31,874 + BACOVA_00349 0.83 -0.3
31,874 + BACOVA_00349 0.83 -0.5
31,876 + BACOVA_00349 0.83 +0.1
31,877 - BACOVA_00349 0.83 -0.9
31,881 + BACOVA_00349 0.83 -0.6
31,882 - BACOVA_00349 0.83 -2.1
31,882 - BACOVA_00349 0.83 +0.2
31,897 - BACOVA_00349 0.84 +1.0
31,899 + BACOVA_00349 0.84 -1.2
31,900 - BACOVA_00349 0.84 +0.8
31,904 - BACOVA_00349 0.84 -0.3
31,906 - BACOVA_00349 0.84 -0.7
31,931 + BACOVA_00349 0.85 -0.5
31,936 - BACOVA_00349 0.85 -2.7
31,943 + BACOVA_00349 0.86 +2.3
31,975 + BACOVA_00349 0.87 +0.7
31,976 - BACOVA_00349 0.87 -0.4
31,976 - BACOVA_00349 0.87 -0.1
32,040 - BACOVA_00349 0.90 -0.6
32,141 - -0.2
32,165 + -2.4
32,185 + -0.6
32,185 + +0.9
32,210 - +1.8
32,210 - -0.4
32,216 - +0.8
32,216 - -0.6
32,248 + -2.4
32,249 - -2.1
32,281 - -0.2
32,293 - -0.3
32,296 + -0.7
32,300 - +0.0
32,302 - -0.8
32,324 + -0.8
32,341 - +0.8
32,341 - +0.2
32,341 - +0.6
32,347 + +0.6
32,347 + -0.9
32,348 - -0.5
32,374 + -2.0
32,410 - +0.6
33,481 - +0.7
33,484 - +0.2
33,484 - -1.5
33,486 - +0.0
33,509 - -0.2
33,523 - +0.3
33,559 + -0.8
33,560 - -0.6
33,565 - -0.4
33,580 - BACOVA_00351 0.17 +0.2
33,588 - BACOVA_00351 0.23 -0.8
33,667 + BACOVA_00351 0.84 +0.2
33,725 + BACOVA_00352 0.19 -0.3
33,726 - BACOVA_00352 0.20 +1.7
33,732 + BACOVA_00352 0.25 +0.7
33,737 - BACOVA_00352 0.29 +1.1
33,876 + +0.8
33,879 + -0.3
33,879 + +1.2
34,012 - +0.5
34,012 - +1.8
34,012 - +0.8
34,023 - +0.4
34,081 + -1.0
34,081 + +0.4
34,081 + +0.7
34,103 - +0.6
34,196 - +0.2
34,196 - +2.9
34,239 + BACOVA_00353 0.11 +2.1
34,239 + BACOVA_00353 0.11 +0.9
34,240 - BACOVA_00353 0.11 +1.3
34,254 + BACOVA_00353 0.11 +0.2
34,261 + BACOVA_00353 0.11 +0.6
34,262 - BACOVA_00353 0.11 +0.8
34,262 - BACOVA_00353 0.11 +0.8
34,391 + BACOVA_00353 0.15 +1.8
34,392 - BACOVA_00353 0.15 -1.0
34,392 - BACOVA_00353 0.15 +1.3

Or see this region's nucleotide sequence