Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00250 and BACOVA_00251 are separated by 109 nucleotides BACOVA_00251 and BACOVA_00252 are separated by 151 nucleotides BACOVA_00252 and BACOVA_00253 are separated by 53 nucleotides BACOVA_00253 and BACOVA_00254 are separated by 9 nucleotides
BACOVA_00250: BACOVA_00250 - glycosyl hydrolase family 2, sugar binding domain protein, at 33,245 to 35,605
_00250
BACOVA_00251: BACOVA_00251 - hypothetical protein, at 35,715 to 35,816
_00251
BACOVA_00252: BACOVA_00252 - hypothetical protein, at 35,968 to 36,168
_00252
BACOVA_00253: BACOVA_00253 - hypothetical protein, at 36,222 to 36,485
_00253
BACOVA_00254: BACOVA_00254 - hypothetical protein, at 36,495 to 36,836
_00254
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.057 kb on - strand, within BACOVA_00250 at 35.086 kb on + strand, within BACOVA_00250 at 35.087 kb on - strand, within BACOVA_00250 at 35.087 kb on - strand, within BACOVA_00250 at 35.087 kb on - strand, within BACOVA_00250 at 35.129 kb on - strand, within BACOVA_00250 at 35.173 kb on + strand, within BACOVA_00250 at 35.173 kb on + strand, within BACOVA_00250 at 35.173 kb on + strand, within BACOVA_00250 at 35.174 kb on - strand, within BACOVA_00250 at 35.174 kb on - strand, within BACOVA_00250 at 35.178 kb on + strand, within BACOVA_00250 at 35.178 kb on + strand, within BACOVA_00250 at 35.179 kb on - strand, within BACOVA_00250 at 35.179 kb on - strand, within BACOVA_00250 at 35.187 kb on + strand, within BACOVA_00250 at 35.188 kb on - strand, within BACOVA_00250 at 35.188 kb on - strand, within BACOVA_00250 at 35.188 kb on - strand, within BACOVA_00250 at 35.193 kb on - strand, within BACOVA_00250 at 35.193 kb on - strand, within BACOVA_00250 at 35.195 kb on - strand, within BACOVA_00250 at 35.195 kb on - strand, within BACOVA_00250 at 35.211 kb on + strand, within BACOVA_00250 at 35.222 kb on + strand, within BACOVA_00250 at 35.258 kb on - strand, within BACOVA_00250 at 35.397 kb on + strand at 35.397 kb on + strand at 35.398 kb on - strand at 35.477 kb on - strand at 35.481 kb on + strand at 35.481 kb on + strand at 35.482 kb on - strand at 35.486 kb on - strand at 35.489 kb on + strand at 35.536 kb on + strand at 35.536 kb on + strand at 35.537 kb on - strand at 35.541 kb on + strand at 35.541 kb on + strand at 35.542 kb on - strand at 35.542 kb on - strand at 35.542 kb on - strand at 35.567 kb on - strand at 35.567 kb on - strand at 35.572 kb on + strand at 35.594 kb on - strand at 35.596 kb on + strand at 35.603 kb on + strand at 35.631 kb on + strand at 35.631 kb on + strand at 35.631 kb on + strand at 35.661 kb on - strand at 35.664 kb on + strand at 35.665 kb on - strand at 35.711 kb on + strand at 35.716 kb on + strand at 35.717 kb on - strand at 35.721 kb on - strand at 35.762 kb on + strand, within BACOVA_00251 at 35.762 kb on + strand, within BACOVA_00251 at 35.763 kb on - strand, within BACOVA_00251 at 35.817 kb on - strand at 35.895 kb on - strand at 35.924 kb on + strand at 35.974 kb on + strand at 36.038 kb on + strand, within BACOVA_00252 at 36.045 kb on + strand, within BACOVA_00252 at 36.046 kb on - strand, within BACOVA_00252 at 36.048 kb on + strand, within BACOVA_00252 at 36.049 kb on - strand, within BACOVA_00252 at 36.059 kb on + strand, within BACOVA_00252 at 36.060 kb on - strand, within BACOVA_00252 at 36.065 kb on - strand, within BACOVA_00252 at 36.079 kb on + strand, within BACOVA_00252 at 36.080 kb on - strand, within BACOVA_00252 at 36.087 kb on + strand, within BACOVA_00252 at 36.088 kb on - strand, within BACOVA_00252 at 36.118 kb on + strand, within BACOVA_00252 at 36.119 kb on - strand, within BACOVA_00252 at 36.131 kb on - strand, within BACOVA_00252 at 36.133 kb on + strand, within BACOVA_00252 at 36.133 kb on + strand, within BACOVA_00252 at 36.138 kb on + strand, within BACOVA_00252 at 36.154 kb on - strand at 36.182 kb on - strand at 36.184 kb on + strand at 36.185 kb on - strand at 36.190 kb on - strand at 36.197 kb on - strand at 36.205 kb on - strand at 36.215 kb on + strand at 36.228 kb on - strand at 36.241 kb on - strand at 36.245 kb on + strand at 36.246 kb on - strand at 36.249 kb on - strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.251 kb on + strand, within BACOVA_00253 at 36.252 kb on - strand, within BACOVA_00253 at 36.252 kb on - strand, within BACOVA_00253 at 36.252 kb on - strand, within BACOVA_00253 at 36.280 kb on - strand, within BACOVA_00253 at 36.281 kb on + strand, within BACOVA_00253 at 36.352 kb on + strand, within BACOVA_00253 at 36.352 kb on + strand, within BACOVA_00253 at 36.452 kb on + strand, within BACOVA_00253 at 36.453 kb on - strand, within BACOVA_00253 at 36.466 kb on + strand at 36.466 kb on + strand at 36.467 kb on - strand at 36.483 kb on + strand at 36.494 kb on - strand at 36.564 kb on - strand, within BACOVA_00254 at 36.571 kb on + strand, within BACOVA_00254 at 36.575 kb on + strand, within BACOVA_00254 at 36.576 kb on - strand, within BACOVA_00254 at 36.576 kb on - strand, within BACOVA_00254 at 36.576 kb on - strand, within BACOVA_00254 at 36.589 kb on + strand, within BACOVA_00254 at 36.590 kb on - strand, within BACOVA_00254 at 36.605 kb on + strand, within BACOVA_00254 at 36.606 kb on - strand, within BACOVA_00254 at 36.606 kb on - strand, within BACOVA_00254 at 36.608 kb on + strand, within BACOVA_00254 at 36.628 kb on + strand, within BACOVA_00254 at 36.629 kb on - strand, within BACOVA_00254 at 36.629 kb on - strand, within BACOVA_00254 at 36.657 kb on - strand, within BACOVA_00254 at 36.671 kb on + strand, within BACOVA_00254 at 36.689 kb on + strand, within BACOVA_00254 at 36.689 kb on + strand, within BACOVA_00254 at 36.690 kb on - strand, within BACOVA_00254 at 36.692 kb on + strand, within BACOVA_00254 at 36.693 kb on - strand, within BACOVA_00254 at 36.698 kb on - strand, within BACOVA_00254 at 36.698 kb on - strand, within BACOVA_00254 at 36.725 kb on + strand, within BACOVA_00254 at 36.726 kb on - strand, within BACOVA_00254 at 36.726 kb on - strand, within BACOVA_00254 at 36.790 kb on + strand, within BACOVA_00254 at 36.802 kb on - strand at 36.805 kb on + strand at 36.806 kb on - strand at 36.815 kb on - strand at 36.820 kb on - strand at 36.820 kb on - strand at 36.855 kb on - strand at 36.858 kb on + strand at 36.865 kb on + strand at 36.880 kb on + strand at 36.893 kb on + strand at 36.904 kb on - strand at 36.915 kb on + strand at 36.915 kb on + strand at 36.918 kb on - strand at 36.918 kb on - strand at 36.925 kb on + strand at 37.057 kb on - strand at 37.078 kb on + strand at 37.098 kb on + strand at 37.098 kb on + strand at 37.098 kb on + strand at 37.099 kb on - strand at 37.104 kb on + strand at 37.145 kb on + strand at 37.146 kb on - strand at 37.153 kb on + strand at 37.154 kb on - strand at 37.165 kb on + strand at 37.166 kb on - strand at 37.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 35,057 - BACOVA_00250 0.77 -1.0 35,086 + BACOVA_00250 0.78 +1.2 35,087 - BACOVA_00250 0.78 -1.1 35,087 - BACOVA_00250 0.78 -0.6 35,087 - BACOVA_00250 0.78 -0.1 35,129 - BACOVA_00250 0.80 -0.3 35,173 + BACOVA_00250 0.82 -0.2 35,173 + BACOVA_00250 0.82 -0.4 35,173 + BACOVA_00250 0.82 -0.5 35,174 - BACOVA_00250 0.82 -0.2 35,174 - BACOVA_00250 0.82 +0.2 35,178 + BACOVA_00250 0.82 +0.5 35,178 + BACOVA_00250 0.82 -1.5 35,179 - BACOVA_00250 0.82 +0.2 35,179 - BACOVA_00250 0.82 -1.4 35,187 + BACOVA_00250 0.82 -1.0 35,188 - BACOVA_00250 0.82 +0.8 35,188 - BACOVA_00250 0.82 -0.2 35,188 - BACOVA_00250 0.82 +0.6 35,193 - BACOVA_00250 0.83 +0.2 35,193 - BACOVA_00250 0.83 +0.8 35,195 - BACOVA_00250 0.83 -1.0 35,195 - BACOVA_00250 0.83 -0.2 35,211 + BACOVA_00250 0.83 +0.1 35,222 + BACOVA_00250 0.84 -0.6 35,258 - BACOVA_00250 0.85 -0.0 35,397 + +2.0 35,397 + -1.1 35,398 - +0.2 35,477 - +0.5 35,481 + -0.9 35,481 + -0.3 35,482 - +0.1 35,486 - +0.1 35,489 + -0.2 35,536 + -0.0 35,536 + -0.2 35,537 - -1.8 35,541 + -0.4 35,541 + -0.7 35,542 - -2.6 35,542 - -1.2 35,542 - -0.5 35,567 - -0.8 35,567 - -1.9 35,572 + +0.1 35,594 - +1.6 35,596 + -0.1 35,603 + +0.2 35,631 + +0.0 35,631 + -0.1 35,631 + +1.8 35,661 - +0.7 35,664 + -0.0 35,665 - +0.1 35,711 + -0.2 35,716 + -0.5 35,717 - -2.2 35,721 - -1.3 35,762 + BACOVA_00251 0.46 -0.1 35,762 + BACOVA_00251 0.46 -1.6 35,763 - BACOVA_00251 0.47 +0.6 35,817 - -1.6 35,895 - -0.3 35,924 + -0.9 35,974 + -0.4 36,038 + BACOVA_00252 0.35 -0.1 36,045 + BACOVA_00252 0.38 +0.0 36,046 - BACOVA_00252 0.39 -1.1 36,048 + BACOVA_00252 0.40 -1.8 36,049 - BACOVA_00252 0.40 -2.2 36,059 + BACOVA_00252 0.45 +0.4 36,060 - BACOVA_00252 0.46 -1.2 36,065 - BACOVA_00252 0.48 -1.6 36,079 + BACOVA_00252 0.55 -0.2 36,080 - BACOVA_00252 0.56 +0.1 36,087 + BACOVA_00252 0.59 +0.5 36,088 - BACOVA_00252 0.60 -1.9 36,118 + BACOVA_00252 0.75 -1.3 36,119 - BACOVA_00252 0.75 +0.4 36,131 - BACOVA_00252 0.81 -1.7 36,133 + BACOVA_00252 0.82 -1.3 36,133 + BACOVA_00252 0.82 +1.5 36,138 + BACOVA_00252 0.85 +0.9 36,154 - -0.4 36,182 - -0.7 36,184 + +0.1 36,185 - +1.6 36,190 - -0.5 36,197 - -0.2 36,205 - -0.5 36,215 + +1.4 36,228 - -0.6 36,241 - -1.6 36,245 + -0.0 36,246 - -1.1 36,249 - BACOVA_00253 0.10 -0.8 36,251 + BACOVA_00253 0.11 +0.0 36,251 + BACOVA_00253 0.11 +1.2 36,251 + BACOVA_00253 0.11 -0.9 36,251 + BACOVA_00253 0.11 -1.0 36,252 - BACOVA_00253 0.11 -0.7 36,252 - BACOVA_00253 0.11 -0.4 36,252 - BACOVA_00253 0.11 +0.0 36,280 - BACOVA_00253 0.22 -0.1 36,281 + BACOVA_00253 0.22 -0.4 36,352 + BACOVA_00253 0.49 +0.8 36,352 + BACOVA_00253 0.49 -0.9 36,452 + BACOVA_00253 0.87 -1.8 36,453 - BACOVA_00253 0.88 -1.2 36,466 + +1.2 36,466 + -0.1 36,467 - -0.5 36,483 + -0.5 36,494 - -1.9 36,564 - BACOVA_00254 0.20 -0.3 36,571 + BACOVA_00254 0.22 -1.0 36,575 + BACOVA_00254 0.23 -2.0 36,576 - BACOVA_00254 0.24 -0.1 36,576 - BACOVA_00254 0.24 +1.1 36,576 - BACOVA_00254 0.24 +1.1 36,589 + BACOVA_00254 0.27 -0.8 36,590 - BACOVA_00254 0.28 -2.8 36,605 + BACOVA_00254 0.32 -1.8 36,606 - BACOVA_00254 0.32 -0.0 36,606 - BACOVA_00254 0.32 +0.8 36,608 + BACOVA_00254 0.33 -0.9 36,628 + BACOVA_00254 0.39 -0.6 36,629 - BACOVA_00254 0.39 -0.0 36,629 - BACOVA_00254 0.39 -2.1 36,657 - BACOVA_00254 0.47 -1.2 36,671 + BACOVA_00254 0.51 -0.3 36,689 + BACOVA_00254 0.57 -0.3 36,689 + BACOVA_00254 0.57 +0.2 36,690 - BACOVA_00254 0.57 -0.6 36,692 + BACOVA_00254 0.58 -0.3 36,693 - BACOVA_00254 0.58 +1.0 36,698 - BACOVA_00254 0.59 -0.2 36,698 - BACOVA_00254 0.59 -0.3 36,725 + BACOVA_00254 0.67 +0.5 36,726 - BACOVA_00254 0.68 -2.2 36,726 - BACOVA_00254 0.68 -1.1 36,790 + BACOVA_00254 0.86 +1.2 36,802 - -0.8 36,805 + -0.0 36,806 - -0.3 36,815 - -0.4 36,820 - +0.8 36,820 - -0.3 36,855 - -0.8 36,858 + +0.4 36,865 + +0.4 36,880 + -1.8 36,893 + +0.2 36,904 - -0.3 36,915 + -0.1 36,915 + -1.1 36,918 - -0.8 36,918 - -0.4 36,925 + +0.5 37,057 - +1.2 37,078 + -0.9 37,098 + +0.8 37,098 + +0.2 37,098 + +0.9 37,099 - -0.6 37,104 + +0.1 37,145 + -0.1 37,146 - +0.3 37,153 + -0.9 37,154 - -2.3 37,165 + -1.5 37,166 - -0.2 37,166 - -1.2
Or see this region's nucleotide sequence