Strain Fitness in Escherichia fergusonii Becca around EFB2_04771

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
5,020,371	+		EFB2_04770	0.39	-1.1
5,020,372	-		EFB2_04770	0.39	+0.2
5,020,406	+		EFB2_04770	0.42	-0.4
5,020,406	+		EFB2_04770	0.42	-1.1
5,020,406	+		EFB2_04770	0.42	+0.1
5,020,406	+		EFB2_04770	0.42	+0.8
5,020,406	+		EFB2_04770	0.42	+1.0
5,020,406	+		EFB2_04770	0.42	+2.3
5,020,407	-		EFB2_04770	0.42	+0.7
5,020,407	-		EFB2_04770	0.42	-1.3
5,020,407	-		EFB2_04770	0.42	+0.5
5,020,407	-		EFB2_04770	0.42	+2.0
5,020,407	-		EFB2_04770	0.42	-1.1
5,020,407	-		EFB2_04770	0.42	-0.7
5,020,407	-		EFB2_04770	0.42	+0.9
5,020,426	+		EFB2_04770	0.43	-0.6
5,020,426	+		EFB2_04770	0.43	-1.5
5,020,426	+		EFB2_04770	0.43	-0.0
5,020,426	+		EFB2_04770	0.43	-0.6
5,020,426	+		EFB2_04770	0.43	-1.1
5,020,426	+		EFB2_04770	0.43	-0.1
5,020,427	-		EFB2_04770	0.43	-1.7
5,020,427	-		EFB2_04770	0.43	-0.7
5,020,427	-		EFB2_04770	0.43	+0.5
5,020,427	-		EFB2_04770	0.43	-1.1
5,020,428	+		EFB2_04770	0.44	-1.2
5,020,428	+		EFB2_04770	0.44	-1.1
5,020,428	+		EFB2_04770	0.44	-0.2
5,020,429	-		EFB2_04770	0.44	-2.8
5,020,429	-		EFB2_04770	0.44	+0.9
5,020,429	-		EFB2_04770	0.44	+0.3
5,020,429	-		EFB2_04770	0.44	-2.7
5,020,429	-		EFB2_04770	0.44	-0.6
5,020,429	-		EFB2_04770	0.44	+0.8
5,020,429	-		EFB2_04770	0.44	+0.4
5,020,429	-		EFB2_04770	0.44	-0.3
5,020,429	-		EFB2_04770	0.44	+0.9
5,020,429	-		EFB2_04770	0.44	-0.3
5,020,494	+		EFB2_04770	0.48	-0.6
5,020,494	+		EFB2_04770	0.48	+0.5
5,020,494	+		EFB2_04770	0.48	+0.4
5,020,494	+		EFB2_04770	0.48	-0.6
5,020,494	+		EFB2_04770	0.48	-0.1
5,020,494	+		EFB2_04770	0.48	-1.0
5,020,494	+		EFB2_04770	0.48	+0.5
5,020,494	+		EFB2_04770	0.48	+0.3
5,020,494	+		EFB2_04770	0.48	-0.3
5,020,494	+		EFB2_04770	0.48	-1.2
5,020,494	+		EFB2_04770	0.48	-0.2
5,020,494	+		EFB2_04770	0.48	-1.5
5,020,495	-		EFB2_04770	0.49	-1.7
5,020,495	-		EFB2_04770	0.49	+1.2
5,020,495	-		EFB2_04770	0.49	+0.4
5,020,495	-		EFB2_04770	0.49	+0.7
5,020,495	-		EFB2_04770	0.49	-0.6
5,020,495	-		EFB2_04770	0.49	+0.8
5,020,495	-		EFB2_04770	0.49	+0.4
5,020,495	-		EFB2_04770	0.49	-0.3
5,020,495	-		EFB2_04770	0.49	+0.3
5,020,495	-		EFB2_04770	0.49	-0.9
5,020,495	-		EFB2_04770	0.49	+1.0
5,020,537	+		EFB2_04770	0.52	+0.0
5,020,537	+		EFB2_04770	0.52	-0.8
5,020,537	+		EFB2_04770	0.52	-1.0
5,020,537	+		EFB2_04770	0.52	-2.2
5,020,537	+		EFB2_04770	0.52	+1.0
5,020,537	+		EFB2_04770	0.52	+2.9
5,020,537	+		EFB2_04770	0.52	-3.3
5,020,537	+		EFB2_04770	0.52	-0.3
5,020,537	+		EFB2_04770	0.52	+0.8
5,020,537	+		EFB2_04770	0.52	-2.2
5,020,537	+		EFB2_04770	0.52	-1.1
5,020,537	+		EFB2_04770	0.52	-0.1
5,020,537	+		EFB2_04770	0.52	+0.6
5,020,538	-		EFB2_04770	0.52	-0.8
5,020,538	-		EFB2_04770	0.52	+0.2
5,020,538	-		EFB2_04770	0.52	+0.4
5,020,538	-		EFB2_04770	0.52	+0.1
5,020,538	-		EFB2_04770	0.52	-2.3
5,020,538	-		EFB2_04770	0.52	+0.4
5,020,538	-		EFB2_04770	0.52	+0.0
5,020,538	-		EFB2_04770	0.52	+0.2
5,020,538	-		EFB2_04770	0.52	-0.2
5,020,538	-		EFB2_04770	0.52	-1.1
5,020,538	-		EFB2_04770	0.52	-0.2
5,020,538	-		EFB2_04770	0.52	+0.4
5,020,538	-		EFB2_04770	0.52	+0.3
5,020,538	-		EFB2_04770	0.52	-0.8
5,020,538	-		EFB2_04770	0.52	-2.2
5,020,538	-		EFB2_04770	0.52	+1.0
5,020,538	-		EFB2_04770	0.52	-1.6
5,020,538	-		EFB2_04770	0.52	+1.5
5,020,538	-		EFB2_04770	0.52	-0.8
5,020,538	-		EFB2_04770	0.52	-0.8
5,020,539	+		EFB2_04770	0.52	+1.0
5,020,539	+		EFB2_04770	0.52	+0.2
5,020,539	+		EFB2_04770	0.52	+1.3
5,020,539	+		EFB2_04770	0.52	+1.6
5,020,539	+		EFB2_04770	0.52	+0.7
5,020,539	+		EFB2_04770	0.52	-0.5
5,020,539	+		EFB2_04770	0.52	-1.9
5,020,539	+		EFB2_04770	0.52	-0.3
5,020,539	+		EFB2_04770	0.52	+0.8
5,020,539	+		EFB2_04770	0.52	-0.1
5,020,539	+		EFB2_04770	0.52	-1.2
5,020,539	+		EFB2_04770	0.52	+0.4
5,020,539	+		EFB2_04770	0.52	-3.1
5,020,539	+		EFB2_04770	0.52	-0.9
5,020,539	+		EFB2_04770	0.52	+1.0
5,020,539	+		EFB2_04770	0.52	+0.2
5,020,539	+		EFB2_04770	0.52	-0.9
5,020,539	+		EFB2_04770	0.52	-1.0
5,020,539	+		EFB2_04770	0.52	+0.2
5,020,539	+		EFB2_04770	0.52	+0.2
5,020,540	-		EFB2_04770	0.52	-1.1
5,020,540	-		EFB2_04770	0.52	+1.5
5,020,540	-		EFB2_04770	0.52	+0.7
5,020,540	-		EFB2_04770	0.52	+0.4
5,020,540	-		EFB2_04770	0.52	-1.1
5,020,540	-		EFB2_04770	0.52	-0.3
5,020,540	-		EFB2_04770	0.52	+0.6
5,020,540	-		EFB2_04770	0.52	+0.6
5,020,540	-		EFB2_04770	0.52	-0.3
5,020,540	-		EFB2_04770	0.52	+0.1
5,020,540	-		EFB2_04770	0.52	+0.6
5,020,540	-		EFB2_04770	0.52	-3.8
5,020,540	-		EFB2_04770	0.52	+1.3
5,020,540	-		EFB2_04770	0.52	+0.5
5,020,540	-		EFB2_04770	0.52	+0.2
5,020,540	-		EFB2_04770	0.52	+1.0
5,020,540	-		EFB2_04770	0.52	-0.1
5,020,540	-		EFB2_04770	0.52	+0.7
5,020,540	-		EFB2_04770	0.52	+0.8
5,020,540	-		EFB2_04770	0.52	-1.1
5,020,540	-		EFB2_04770	0.52	+0.3
5,020,540	-		EFB2_04770	0.52	-1.0
5,020,540	-		EFB2_04770	0.52	-1.6
5,020,544	+		EFB2_04770	0.52	-3.6
5,020,544	+		EFB2_04770	0.52	+1.5
5,020,544	+		EFB2_04770	0.52	-2.1
5,020,544	+		EFB2_04770	0.52	-0.6
5,020,544	+		EFB2_04770	0.52	+0.2
5,020,544	+		EFB2_04770	0.52	+0.7
5,020,544	+		EFB2_04770	0.52	-0.0
5,020,544	+		EFB2_04770	0.52	+0.6
5,020,544	+		EFB2_04770	0.52	+1.5
5,020,544	+		EFB2_04770	0.52	+0.5
5,020,544	+		EFB2_04770	0.52	+0.6
5,020,544	+		EFB2_04770	0.52	+1.7
5,020,544	+		EFB2_04770	0.52	-1.0
5,020,544	+		EFB2_04770	0.52	+0.5
5,020,544	+		EFB2_04770	0.52	-1.0
5,020,544	+		EFB2_04770	0.52	-2.6
5,020,544	+		EFB2_04770	0.52	-1.1
5,020,544	+		EFB2_04770	0.52	+0.1
5,020,544	+		EFB2_04770	0.52	-3.5
5,020,545	-		EFB2_04770	0.52	-1.6
5,020,545	-		EFB2_04770	0.52	-0.7
5,020,545	-		EFB2_04770	0.52	-0.6
5,020,545	-		EFB2_04770	0.52	-0.2
5,020,545	-		EFB2_04770	0.52	-0.1
5,020,545	-		EFB2_04770	0.52	+0.0
5,020,545	-		EFB2_04770	0.52	-0.5
5,020,545	-		EFB2_04770	0.52	-0.4
5,020,545	-		EFB2_04770	0.52	-1.4
5,020,545	-		EFB2_04770	0.52	-2.2
5,020,545	-		EFB2_04770	0.52	+1.3
5,020,545	-		EFB2_04770	0.52	+0.4
5,020,545	-		EFB2_04770	0.52	+0.4
5,020,545	-		EFB2_04770	0.52	+0.9
5,020,545	-		EFB2_04770	0.52	-0.3
5,020,545	-		EFB2_04770	0.52	-0.8
5,020,545	-		EFB2_04770	0.52	-0.4
5,020,545	-		EFB2_04770	0.52	-0.8
5,020,545	-		EFB2_04770	0.52	-0.6
5,020,545	-		EFB2_04770	0.52	+0.0
5,020,578	+		EFB2_04770	0.55	-0.7
5,020,578	+		EFB2_04770	0.55	+1.0
5,020,578	+		EFB2_04770	0.55	+1.1
5,020,578	+		EFB2_04770	0.55	+0.8
5,020,579	-		EFB2_04770	0.55	-0.2
5,020,579	-		EFB2_04770	0.55	-1.9
5,020,579	-		EFB2_04770	0.55	-0.7
5,020,579	-		EFB2_04770	0.55	-0.8
5,020,672	+		EFB2_04770	0.62	-0.1
5,020,673	-		EFB2_04770	0.62	+0.4
5,020,673	-		EFB2_04770	0.62	+0.4
5,020,673	-		EFB2_04770	0.62	+0.5
5,020,673	-		EFB2_04770	0.62	-0.0
5,020,673	-		EFB2_04770	0.62	+0.1
5,020,673	-		EFB2_04770	0.62	+0.1
5,020,673	-		EFB2_04770	0.62	-0.9
5,020,673	-		EFB2_04770	0.62	-1.5
5,020,686	+		EFB2_04770	0.63	-0.5
5,020,687	-		EFB2_04770	0.63	-0.1
5,020,707	+		EFB2_04770	0.64	-0.1
5,020,708	-		EFB2_04770	0.65	+1.4
5,020,710	+		EFB2_04770	0.65	-0.0
5,020,710	+		EFB2_04770	0.65	+1.3
5,020,710	+		EFB2_04770	0.65	-0.9
5,020,710	+		EFB2_04770	0.65	+1.0
5,020,710	+		EFB2_04770	0.65	-0.7
5,020,710	+		EFB2_04770	0.65	-1.7
5,020,710	+		EFB2_04770	0.65	-0.8
5,020,710	+		EFB2_04770	0.65	-0.7
5,020,710	+		EFB2_04770	0.65	+0.4
5,020,710	+		EFB2_04770	0.65	-0.0
5,020,711	-		EFB2_04770	0.65	-0.3
5,020,711	-		EFB2_04770	0.65	-0.9
5,020,711	-		EFB2_04770	0.65	-0.7
5,020,711	-		EFB2_04770	0.65	-0.7
5,020,711	-		EFB2_04770	0.65	-1.8
5,020,711	-		EFB2_04770	0.65	+1.2
5,020,711	-		EFB2_04770	0.65	-1.9
5,020,711	-		EFB2_04770	0.65	-0.3
5,020,711	-		EFB2_04770	0.65	+1.7
5,020,711	-		EFB2_04770	0.65	-0.0
5,020,720	-		EFB2_04770	0.65	-1.8
5,020,744	+		EFB2_04770	0.67	-0.7
5,020,744	+		EFB2_04770	0.67	-0.6
5,020,745	-		EFB2_04770	0.67	+0.3
5,020,745	-		EFB2_04770	0.67	+0.1
5,020,745	-		EFB2_04770	0.67	+0.8
5,020,745	-		EFB2_04770	0.67	-1.0
5,020,797	+		EFB2_04770	0.71	-0.1
5,020,797	+		EFB2_04770	0.71	+1.1
5,020,797	+		EFB2_04770	0.71	-0.4
5,020,798	-		EFB2_04770	0.71	-0.6
5,020,798	-		EFB2_04770	0.71	-0.1
5,020,798	-		EFB2_04770	0.71	+1.6
5,020,831	+		EFB2_04770	0.74	-1.3
5,020,831	+		EFB2_04770	0.74	-0.3
5,020,831	+		EFB2_04770	0.74	+0.7
5,020,831	+		EFB2_04770	0.74	+1.1
5,020,831	+		EFB2_04770	0.74	-0.4
5,020,831	+		EFB2_04770	0.74	+0.3
5,020,832	-		EFB2_04770	0.74	-0.9
5,020,832	-		EFB2_04770	0.74	+0.3
5,020,832	-		EFB2_04770	0.74	+1.3
5,020,832	-		EFB2_04770	0.74	+1.0
5,020,832	-		EFB2_04770	0.74	-0.1
5,020,832	-		EFB2_04770	0.74	-3.6
5,020,832	-		EFB2_04770	0.74	-0.3
5,020,832	-		EFB2_04770	0.74	+0.3
5,020,868	+		EFB2_04770	0.77	+0.9
5,020,868	+		EFB2_04770	0.77	-3.0
5,020,868	+		EFB2_04770	0.77	+0.3
5,020,868	+		EFB2_04770	0.77	-0.3
5,020,868	+		EFB2_04770	0.77	+1.4
5,020,868	+		EFB2_04770	0.77	+0.3
5,020,868	+		EFB2_04770	0.77	+0.7
5,020,868	+		EFB2_04770	0.77	+0.1
5,020,868	+		EFB2_04770	0.77	+0.5
5,020,869	-		EFB2_04770	0.77	+0.4
5,020,869	-		EFB2_04770	0.77	+1.2
5,020,869	-		EFB2_04770	0.77	+1.2
5,020,869	-		EFB2_04770	0.77	+0.6
5,020,869	-		EFB2_04770	0.77	+0.4
5,020,869	-		EFB2_04770	0.77	-0.3
5,020,869	-		EFB2_04770	0.77	-2.1
5,020,869	-		EFB2_04770	0.77	+1.5
5,020,869	-		EFB2_04770	0.77	-0.6
5,020,869	-		EFB2_04770	0.77	+0.3
5,020,869	-		EFB2_04770	0.77	-0.5
5,020,869	-		EFB2_04770	0.77	+2.0
5,020,869	-		EFB2_04770	0.77	+0.6
5,020,869	-		EFB2_04770	0.77	-1.2
5,020,869	-		EFB2_04770	0.77	-0.4
5,020,917	+		EFB2_04770	0.80	-0.1
5,020,918	-		EFB2_04770	0.80	+0.2
5,020,932	+		EFB2_04770	0.81	-0.6
5,020,932	+		EFB2_04770	0.81	-2.1
5,020,932	+		EFB2_04770	0.81	-0.8
5,020,932	+		EFB2_04770	0.81	+0.5
5,020,932	+		EFB2_04770	0.81	+1.7
5,020,932	+		EFB2_04770	0.81	+0.5
5,020,932	+		EFB2_04770	0.81	-0.9
5,020,932	+		EFB2_04770	0.81	+0.5
5,020,933	-		EFB2_04770	0.81	-3.3
5,020,933	-		EFB2_04770	0.81	-2.2
5,020,933	-		EFB2_04770	0.81	-0.5
5,020,933	-		EFB2_04770	0.81	+0.3
5,020,933	-		EFB2_04770	0.81	-1.6
5,020,933	-		EFB2_04770	0.81	-2.0
5,020,933	-		EFB2_04770	0.81	-2.1
5,020,951	+		EFB2_04770	0.83	+0.4
5,020,951	+		EFB2_04770	0.83	+0.7
5,020,951	+		EFB2_04770	0.83	+0.0
5,020,994	+		EFB2_04770	0.86	-2.4
5,020,994	+		EFB2_04770	0.86	+2.9
5,020,995	-		EFB2_04770	0.86	+0.3
5,021,029	+		EFB2_04770	0.89	+2.0
5,021,030	-		EFB2_04770	0.89	+0.4
5,021,083	+				-1.4
5,021,083	+				-0.1
5,021,083	+				+1.2
5,021,083	+				-0.7
5,021,084	-				+1.1
5,021,084	-				-2.5
5,021,084	-				+0.7
5,021,084	-				+0.5
5,021,084	-				-1.6
5,021,084	-				+0.1
5,021,084	-				+0.6
5,021,084	-				+0.5
5,021,087	+				+1.3
5,021,087	+				+0.6
5,021,087	+				+0.3
5,021,087	+				-0.3
5,021,087	+				+0.0
5,021,088	-				+0.2
5,021,088	-				-3.0
5,021,088	-				-0.5
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