Strain Fitness in Escherichia fergusonii Becca around EFB2_04616

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,851,081	-				+0.0
4,851,101	+				+0.8
4,851,101	+				+1.3
4,851,101	+				+0.9
4,851,101	+				-0.1
4,851,101	+				-0.3
4,851,101	+				-1.3
4,851,101	+				-1.0
4,851,101	+				-0.7
4,851,101	+				-1.1
4,851,102	-				+0.4
4,851,102	-				+0.4
4,851,102	-				+0.2
4,851,102	-				+0.3
4,851,102	-				+0.1
4,851,102	-				+0.6
4,851,102	-				+2.3
4,851,102	-				+0.2
4,851,102	-				-1.5
4,851,102	-				-0.3
4,851,102	-				-0.3
4,851,102	-				-1.4
4,851,102	-				-0.9
4,851,102	-				-2.8
4,851,102	-				-2.9
4,851,102	-				+0.8
4,851,102	-				-0.5
4,851,102	-				-0.2
4,851,102	-				+0.4
4,851,102	-				-1.7
4,851,102	-				-0.5
4,851,102	-				+0.5
4,851,102	-				+0.7
4,851,102	-				+0.2
4,851,113	+				-0.1
4,851,113	+				+0.0
4,851,113	+				-1.5
4,851,113	+				-0.2
4,851,113	+				+1.0
4,851,113	+				-1.7
4,851,113	+				-0.7
4,851,114	-				+0.8
4,851,114	-				-0.3
4,851,114	-				-0.4
4,851,114	-				-0.1
4,851,114	-				+0.4
4,851,114	-				+0.9
4,851,114	-				-0.1
4,851,114	-				+0.2
4,851,114	-				-0.6
4,851,114	-				+1.5
4,851,114	-				+0.2
4,851,138	+				+0.2
4,851,138	+				-1.3
4,851,138	+				-0.6
4,851,139	-				+0.6
4,851,145	+				+0.0
4,851,145	+				+0.1
4,851,145	+				-0.0
4,851,145	+				-0.6
4,851,145	+				+0.4
4,851,145	+				+0.2
4,851,145	+				+0.4
4,851,146	-				+0.4
4,851,146	-				+0.3
4,851,146	-				+1.1
4,851,146	-				-0.3
4,851,257	+		EFB2_04615	0.20	+0.8
4,851,257	+		EFB2_04615	0.20	+0.0
4,851,257	+		EFB2_04615	0.20	+0.4
4,851,258	-		EFB2_04615	0.20	+0.8
4,851,258	-		EFB2_04615	0.20	+0.8
4,851,258	-		EFB2_04615	0.20	+0.0
4,851,258	-		EFB2_04615	0.20	-1.2
4,851,258	-		EFB2_04615	0.20	+0.0
4,851,258	-		EFB2_04615	0.20	-2.4
4,851,267	+		EFB2_04615	0.21	-0.5
4,851,267	+		EFB2_04615	0.21	-0.7
4,851,280	+		EFB2_04615	0.22	+0.5
4,851,281	-		EFB2_04615	0.23	+0.7
4,851,281	-		EFB2_04615	0.23	-0.1
4,851,281	-		EFB2_04615	0.23	-3.6
4,851,317	+		EFB2_04615	0.27	+1.0
4,851,317	+		EFB2_04615	0.27	+0.3
4,851,317	+		EFB2_04615	0.27	+0.0
4,851,317	+		EFB2_04615	0.27	+0.6
4,851,317	+		EFB2_04615	0.27	+2.2
4,851,318	-		EFB2_04615	0.27	-1.4
4,851,330	+		EFB2_04615	0.29	-0.4
4,851,336	+		EFB2_04615	0.30	+1.1
4,851,336	+		EFB2_04615	0.30	+0.2
4,851,336	+		EFB2_04615	0.30	-0.4
4,851,336	+		EFB2_04615	0.30	+1.3
4,851,337	-		EFB2_04615	0.30	-0.5
4,851,412	+		EFB2_04615	0.40	+0.1
4,851,412	+		EFB2_04615	0.40	-0.2
4,851,412	+		EFB2_04615	0.40	-0.4
4,851,412	+		EFB2_04615	0.40	-0.2
4,851,412	+		EFB2_04615	0.40	-2.1
4,851,412	+		EFB2_04615	0.40	-1.0
4,851,412	+		EFB2_04615	0.40	+0.9
4,851,412	+		EFB2_04615	0.40	-1.0
4,851,412	+		EFB2_04615	0.40	+0.5
4,851,412	+		EFB2_04615	0.40	-1.3
4,851,412	+		EFB2_04615	0.40	+1.1
4,851,413	-		EFB2_04615	0.40	+0.1
4,851,413	-		EFB2_04615	0.40	-0.5
4,851,413	-		EFB2_04615	0.40	+0.2
4,851,413	-		EFB2_04615	0.40	-0.3
4,851,413	-		EFB2_04615	0.40	-0.8
4,851,413	-		EFB2_04615	0.40	-0.2
4,851,413	-		EFB2_04615	0.40	-0.2
4,851,413	-		EFB2_04615	0.40	-0.7
4,851,413	-		EFB2_04615	0.40	+1.3
4,851,413	-		EFB2_04615	0.40	-0.4
4,851,413	-		EFB2_04615	0.40	+0.3
4,851,413	-		EFB2_04615	0.40	+0.2
4,851,413	-		EFB2_04615	0.40	+0.7
4,851,413	-		EFB2_04615	0.40	+0.4
4,851,413	-		EFB2_04615	0.40	+0.1
4,851,413	-		EFB2_04615	0.40	-1.7
4,851,413	-		EFB2_04615	0.40	-1.1
4,851,413	-		EFB2_04615	0.40	-1.4
4,851,417	+		EFB2_04615	0.40	+0.4
4,851,417	+		EFB2_04615	0.40	-1.4
4,851,417	+		EFB2_04615	0.40	-0.7
4,851,417	+		EFB2_04615	0.40	+0.9
4,851,417	+		EFB2_04615	0.40	-0.1
4,851,417	+		EFB2_04615	0.40	-0.3
4,851,417	+		EFB2_04615	0.40	-0.1
4,851,417	+		EFB2_04615	0.40	+0.7
4,851,417	+		EFB2_04615	0.40	-0.6
4,851,417	+		EFB2_04615	0.40	-0.2
4,851,417	+		EFB2_04615	0.40	+1.5
4,851,417	+		EFB2_04615	0.40	-0.9
4,851,417	+		EFB2_04615	0.40	-2.2
4,851,418	-		EFB2_04615	0.40	+0.9
4,851,418	-		EFB2_04615	0.40	+1.9
4,851,418	-		EFB2_04615	0.40	+0.2
4,851,418	-		EFB2_04615	0.40	-1.5
4,851,418	-		EFB2_04615	0.40	-0.5
4,851,418	-		EFB2_04615	0.40	+1.3
4,851,418	-		EFB2_04615	0.40	+0.5
4,851,418	-		EFB2_04615	0.40	+0.7
4,851,418	-		EFB2_04615	0.40	+2.2
4,851,418	-		EFB2_04615	0.40	-3.2
4,851,418	-		EFB2_04615	0.40	-0.3
4,851,418	-		EFB2_04615	0.40	+0.0
4,851,418	-		EFB2_04615	0.40	-0.4
4,851,418	-		EFB2_04615	0.40	+0.4
4,851,430	-		EFB2_04615	0.42	+3.9
4,851,442	-		EFB2_04615	0.43	-2.1
4,851,442	-		EFB2_04615	0.43	+1.1
4,851,486	+		EFB2_04615	0.49	-0.3
4,851,486	+		EFB2_04615	0.49	+0.2
4,851,486	+		EFB2_04615	0.49	+1.2
4,851,486	+		EFB2_04615	0.49	-1.1
4,851,486	+		EFB2_04615	0.49	-1.5
4,851,487	-		EFB2_04615	0.49	+0.1
4,851,487	-		EFB2_04615	0.49	-1.4
4,851,487	-		EFB2_04615	0.49	+1.0
4,851,509	+		EFB2_04615	0.52	-0.6
4,851,509	+		EFB2_04615	0.52	+0.1
4,851,512	+		EFB2_04615	0.52	-0.1
4,851,513	-		EFB2_04615	0.53	+1.9
4,851,513	-		EFB2_04615	0.53	+0.6
4,851,513	-		EFB2_04615	0.53	-0.3
4,851,513	-		EFB2_04615	0.53	+0.9
4,851,563	+		EFB2_04615	0.59	-1.4
4,851,563	+		EFB2_04615	0.59	-1.8
4,851,563	+		EFB2_04615	0.59	-0.6
4,851,563	+		EFB2_04615	0.59	+2.2
4,851,563	+		EFB2_04615	0.59	+1.7
4,851,564	-		EFB2_04615	0.59	+0.2
4,851,581	+		EFB2_04615	0.61	+0.2
4,851,581	+		EFB2_04615	0.61	-0.7
4,851,590	+		EFB2_04615	0.63	-0.4
4,851,590	+		EFB2_04615	0.63	-0.8
4,851,590	+		EFB2_04615	0.63	+0.8
4,851,590	+		EFB2_04615	0.63	-1.4
4,851,590	+		EFB2_04615	0.63	+0.9
4,851,590	+		EFB2_04615	0.63	-0.3
4,851,590	+		EFB2_04615	0.63	+0.2
4,851,590	+		EFB2_04615	0.63	-0.2
4,851,590	+		EFB2_04615	0.63	-0.2
4,851,590	+		EFB2_04615	0.63	+0.5
4,851,590	+		EFB2_04615	0.63	-1.5
4,851,590	+		EFB2_04615	0.63	+0.8
4,851,590	+		EFB2_04615	0.63	+0.0
4,851,590	+		EFB2_04615	0.63	-2.9
4,851,590	+		EFB2_04615	0.63	-2.4
4,851,590	+		EFB2_04615	0.63	-0.1
4,851,590	+		EFB2_04615	0.63	+0.4
4,851,590	+		EFB2_04615	0.63	-0.0
4,851,590	+		EFB2_04615	0.63	-1.4
4,851,590	+		EFB2_04615	0.63	-3.5
4,851,590	+		EFB2_04615	0.63	-0.2
4,851,590	+		EFB2_04615	0.63	+0.3
4,851,590	+		EFB2_04615	0.63	+0.0
4,851,590	+		EFB2_04615	0.63	-2.2
4,851,590	+		EFB2_04615	0.63	-0.5
4,851,590	+		EFB2_04615	0.63	+0.9
4,851,591	-		EFB2_04615	0.63	-1.6
4,851,591	-		EFB2_04615	0.63	+0.5
4,851,591	-		EFB2_04615	0.63	+1.1
4,851,591	-		EFB2_04615	0.63	-0.0
4,851,591	-		EFB2_04615	0.63	+0.1
4,851,591	-		EFB2_04615	0.63	-1.7
4,851,591	-		EFB2_04615	0.63	+1.0
4,851,591	-		EFB2_04615	0.63	-0.7
4,851,591	-		EFB2_04615	0.63	-1.7
4,851,591	-		EFB2_04615	0.63	-1.8
4,851,591	-		EFB2_04615	0.63	-0.9
4,851,591	-		EFB2_04615	0.63	+1.1
4,851,591	-		EFB2_04615	0.63	+1.9
4,851,591	-		EFB2_04615	0.63	+0.2
4,851,591	-		EFB2_04615	0.63	+0.3
4,851,594	+		EFB2_04615	0.63	+1.1
4,851,594	+		EFB2_04615	0.63	-1.5
4,851,594	+		EFB2_04615	0.63	+1.1
4,851,595	-		EFB2_04615	0.63	-2.3
4,851,595	-		EFB2_04615	0.63	+0.2
4,851,595	-		EFB2_04615	0.63	+0.2
4,851,595	-		EFB2_04615	0.63	+0.5
4,851,676	+		EFB2_04615	0.74	-0.3
4,851,676	+		EFB2_04615	0.74	+0.1
4,851,676	+		EFB2_04615	0.74	-0.7
4,851,676	+		EFB2_04615	0.74	+0.4
4,851,677	-		EFB2_04615	0.74	+0.1
4,851,677	-		EFB2_04615	0.74	+0.7
4,851,677	-		EFB2_04615	0.74	+0.1
4,851,677	-		EFB2_04615	0.74	+1.0
4,851,677	-		EFB2_04615	0.74	-0.1
4,851,709	+		EFB2_04615	0.78	-1.3
4,851,709	+		EFB2_04615	0.78	-0.6
4,851,709	+		EFB2_04615	0.78	+0.2
4,851,709	+		EFB2_04615	0.78	+0.2
4,851,709	+		EFB2_04615	0.78	+0.5
4,851,709	+		EFB2_04615	0.78	-0.2
4,851,709	+		EFB2_04615	0.78	+1.2
4,851,709	+		EFB2_04615	0.78	+1.8
4,851,709	+		EFB2_04615	0.78	-3.4
4,851,709	+		EFB2_04615	0.78	+1.2
4,851,709	+		EFB2_04615	0.78	+0.4
4,851,709	+		EFB2_04615	0.78	-0.4
4,851,709	+		EFB2_04615	0.78	+0.4
4,851,709	+		EFB2_04615	0.78	-0.2
4,851,709	+		EFB2_04615	0.78	+0.4
4,851,709	+		EFB2_04615	0.78	-0.2
4,851,709	+		EFB2_04615	0.78	-0.2
4,851,709	+		EFB2_04615	0.78	-0.0
4,851,710	-		EFB2_04615	0.78	+1.5
4,851,710	-		EFB2_04615	0.78	-2.8
4,851,710	-		EFB2_04615	0.78	+1.9
4,851,710	-		EFB2_04615	0.78	-0.7
4,851,710	-		EFB2_04615	0.78	-1.0
4,851,710	-		EFB2_04615	0.78	-0.6
4,851,710	-		EFB2_04615	0.78	+1.4
4,851,710	-		EFB2_04615	0.78	+2.2
4,851,710	-		EFB2_04615	0.78	-0.1
4,851,710	-		EFB2_04615	0.78	-1.3
4,851,710	-		EFB2_04615	0.78	+1.5
4,851,710	-		EFB2_04615	0.78	+1.3
4,851,710	-		EFB2_04615	0.78	-0.9
4,851,710	-		EFB2_04615	0.78	-0.6
4,851,710	-		EFB2_04615	0.78	+1.3
4,851,710	-		EFB2_04615	0.78	+2.1
4,851,710	-		EFB2_04615	0.78	+1.2
4,851,710	-		EFB2_04615	0.78	+0.7
4,851,710	-		EFB2_04615	0.78	-1.3
4,851,710	-		EFB2_04615	0.78	+1.7
4,851,712	+		EFB2_04615	0.78	-0.8
4,851,712	+		EFB2_04615	0.78	-2.8
4,851,712	+		EFB2_04615	0.78	+0.9
4,851,712	+		EFB2_04615	0.78	+0.9
4,851,712	+		EFB2_04615	0.78	+0.6
4,851,712	+		EFB2_04615	0.78	+0.6
4,851,712	+		EFB2_04615	0.78	+0.4
4,851,713	-		EFB2_04615	0.78	+0.1
4,851,748	+		EFB2_04615	0.83	-0.7
4,851,749	-		EFB2_04615	0.83	-0.3
4,851,792	-		EFB2_04615	0.89	+1.6
4,851,818	-				+0.4
4,851,856	+				+0.4
4,851,868	+				-1.6
4,851,868	+				-1.2
4,851,868	+				+0.4
4,851,868	+				+1.2
4,851,868	+				+1.7
4,851,869	-				-0.1
4,851,869	-				+0.1
4,851,869	-				+0.5
4,851,869	-				+1.4
4,851,869	-				+0.1
4,851,869	-				+0.1
4,851,870	+				-0.6
4,851,870	+				+0.5
4,851,870	+				+1.2
4,851,870	+				+0.5
4,851,870	+				+0.8
4,851,870	+				-1.2
4,851,871	-				+0.5
4,851,871	-				-1.1
4,851,871	-				-0.6
4,851,871	-				-1.5
4,851,871	-				+0.4
4,851,871	-				+0.1
4,851,871	-				-0.5
4,851,871	-				-0.3
4,851,871	-				-1.0
4,851,871	-				-0.1
4,851,871	-				+0.4
4,851,879	+				+0.4
4,851,879	+				+1.6
4,851,879	+				+1.0
4,851,879	+				+0.0
4,851,879	+				-2.1
4,851,879	+				-1.3
4,851,879	+				-0.9
4,851,879	+				+1.4
4,851,879	+				+0.2
4,851,879	+				-0.5
4,851,879	+				+1.0
4,851,879	+				-0.3
4,851,879	+				-0.1
4,851,879	+				-1.0
4,851,879	+				-0.0
4,851,879	+				-1.3
4,851,879	+				+0.1
4,851,879	+				+1.6
4,851,879	+				-0.3
4,851,879	+				+0.0
4,851,879	+				+1.2
4,851,879	+				+0.1
4,851,879	+				+1.1
4,851,879	+				-0.7
4,851,880	-				-1.7
4,851,880	-				+0.4
4,851,880	-				+1.3
4,851,880	-				-0.2
4,851,880	-				+0.1
4,851,880	-				-0.6
4,851,880	-				+0.2
4,851,880	-				+1.4
4,851,880	-				+0.7
4,851,880	-				-0.4
4,851,880	-				+0.0
4,851,880	-				-2.8
4,851,880	-				-0.7
4,851,880	-				+0.8
4,851,880	-				+2.3
4,851,880	-				-0.4
4,851,880	-				+2.3
4,851,880	-				+0.0
4,851,880	-				+0.1
4,851,891	+				-1.4
4,851,891	+				+0.4
4,851,891	+				+0.9
4,851,891	+				+2.0
4,851,891	+				-0.5
4,851,892	-				+0.8
4,851,892	-				+1.1
4,851,892	-				+1.5
4,851,892	-				+0.9
4,851,892	-				+0.3
4,851,892	-				-1.7
4,851,892	-				-0.2
4,851,914	+				-1.2
4,851,915	-				-0.9
4,851,915	-				+1.4
4,851,915	-				-0.1
4,851,953	+				-0.1
4,851,954	-				-0.4
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