Strain Fitness in Escherichia fergusonii Becca around EFB2_04494

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,710,956	+				-0.9
4,710,956	+				-2.6
4,710,956	+				-0.4
4,710,956	+				-2.0
4,710,957	-				-0.7
4,710,957	-				+0.6
4,710,958	+				+0.0
4,710,958	+				+0.1
4,710,958	+				+0.1
4,710,958	+				-1.5
4,710,958	+				+0.1
4,710,958	+				+0.2
4,710,958	+				-0.8
4,710,958	+				+0.0
4,710,958	+				-0.6
4,710,958	+				-0.6
4,710,958	+				+1.1
4,710,958	+				+0.2
4,710,958	+				-1.2
4,710,958	+				-0.6
4,710,958	+				-0.2
4,710,959	-				-0.6
4,710,959	-				-2.9
4,710,959	-				-0.4
4,710,959	-				-0.4
4,710,959	-				-0.5
4,710,959	-				-3.3
4,710,959	-				-0.1
4,710,959	-				+0.0
4,710,959	-				+0.5
4,710,959	-				-0.3
4,710,959	-				-2.2
4,710,959	-				-0.4
4,710,959	-				+0.4
4,710,959	-				-2.2
4,711,047	+				+1.6
4,711,047	+				+0.2
4,711,047	+				+1.2
4,711,047	+				-0.7
4,711,047	+				-0.9
4,711,047	+				-1.5
4,711,048	-				+0.8
4,711,048	-				+0.1
4,711,048	-				-0.3
4,711,142	+		EFB2_04493	0.17	-1.9
4,711,142	+		EFB2_04493	0.17	+0.0
4,711,142	+		EFB2_04493	0.17	+1.6
4,711,142	+		EFB2_04493	0.17	+1.4
4,711,142	+		EFB2_04493	0.17	-1.6
4,711,143	-		EFB2_04493	0.17	-1.3
4,711,143	-		EFB2_04493	0.17	+0.5
4,711,143	-		EFB2_04493	0.17	-0.2
4,711,143	-		EFB2_04493	0.17	+1.2
4,711,169	-		EFB2_04493	0.20	+2.3
4,711,187	+		EFB2_04493	0.22	-1.6
4,711,192	+		EFB2_04493	0.22	-0.2
4,711,192	+		EFB2_04493	0.22	-0.4
4,711,192	+		EFB2_04493	0.22	+0.6
4,711,192	+		EFB2_04493	0.22	+0.7
4,711,192	+		EFB2_04493	0.22	-0.5
4,711,193	-		EFB2_04493	0.22	-0.8
4,711,193	-		EFB2_04493	0.22	+0.7
4,711,228	+		EFB2_04493	0.26	-0.7
4,711,228	+		EFB2_04493	0.26	+1.0
4,711,228	+		EFB2_04493	0.26	-0.2
4,711,228	+		EFB2_04493	0.26	+0.4
4,711,228	+		EFB2_04493	0.26	+0.4
4,711,228	+		EFB2_04493	0.26	+0.8
4,711,228	+		EFB2_04493	0.26	+0.1
4,711,229	-		EFB2_04493	0.26	-0.0
4,711,229	-		EFB2_04493	0.26	+0.8
4,711,229	-		EFB2_04493	0.26	-1.0
4,711,229	-		EFB2_04493	0.26	-2.4
4,711,229	-		EFB2_04493	0.26	-0.8
4,711,229	-		EFB2_04493	0.26	+0.5
4,711,229	-		EFB2_04493	0.26	-2.8
4,711,229	-		EFB2_04493	0.26	-1.2
4,711,248	+		EFB2_04493	0.29	+0.5
4,711,248	-		EFB2_04493	0.29	-1.5
4,711,270	+		EFB2_04493	0.31	-0.5
4,711,270	+		EFB2_04493	0.31	+1.4
4,711,270	+		EFB2_04493	0.31	-2.6
4,711,270	+		EFB2_04493	0.31	-1.3
4,711,270	+		EFB2_04493	0.31	-0.6
4,711,270	+		EFB2_04493	0.31	-0.1
4,711,270	+		EFB2_04493	0.31	+1.0
4,711,270	+		EFB2_04493	0.31	-0.3
4,711,270	+		EFB2_04493	0.31	-2.8
4,711,270	+		EFB2_04493	0.31	-0.2
4,711,270	+		EFB2_04493	0.31	-0.1
4,711,270	+		EFB2_04493	0.31	+1.4
4,711,270	+		EFB2_04493	0.31	-0.8
4,711,270	+		EFB2_04493	0.31	+0.6
4,711,270	+		EFB2_04493	0.31	+1.1
4,711,270	+		EFB2_04493	0.31	+0.2
4,711,270	+		EFB2_04493	0.31	-0.4
4,711,270	+		EFB2_04493	0.31	-0.2
4,711,270	+		EFB2_04493	0.31	+0.5
4,711,271	-		EFB2_04493	0.31	-0.3
4,711,271	-		EFB2_04493	0.31	-0.9
4,711,271	-		EFB2_04493	0.31	+0.3
4,711,271	-		EFB2_04493	0.31	-0.8
4,711,271	-		EFB2_04493	0.31	+1.5
4,711,271	-		EFB2_04493	0.31	-0.5
4,711,271	-		EFB2_04493	0.31	+1.4
4,711,271	-		EFB2_04493	0.31	-0.8
4,711,271	-		EFB2_04493	0.31	+0.2
4,711,271	-		EFB2_04493	0.31	+0.8
4,711,271	-		EFB2_04493	0.31	-1.3
4,711,271	-		EFB2_04493	0.31	+0.7
4,711,271	-		EFB2_04493	0.31	-0.2
4,711,319	+		EFB2_04493	0.37	-0.5
4,711,319	+		EFB2_04493	0.37	-1.4
4,711,319	+		EFB2_04493	0.37	-0.6
4,711,320	-		EFB2_04493	0.37	-1.1
4,711,320	-		EFB2_04493	0.37	+1.1
4,711,320	-		EFB2_04493	0.37	-1.7
4,711,324	+		EFB2_04493	0.37	-0.6
4,711,324	+		EFB2_04493	0.37	-0.6
4,711,324	+		EFB2_04493	0.37	+0.9
4,711,324	+		EFB2_04493	0.37	+0.3
4,711,324	+		EFB2_04493	0.37	-0.4
4,711,324	+		EFB2_04493	0.37	+0.5
4,711,324	+		EFB2_04493	0.37	+0.7
4,711,324	+		EFB2_04493	0.37	+1.4
4,711,324	+		EFB2_04493	0.37	+0.6
4,711,325	-		EFB2_04493	0.37	+1.1
4,711,325	-		EFB2_04493	0.37	-0.3
4,711,325	-		EFB2_04493	0.37	+0.2
4,711,325	-		EFB2_04493	0.37	-1.4
4,711,328	+		EFB2_04493	0.38	-0.8
4,711,328	+		EFB2_04493	0.38	-4.3
4,711,328	+		EFB2_04493	0.38	+0.4
4,711,328	+		EFB2_04493	0.38	+0.6
4,711,328	+		EFB2_04493	0.38	+1.7
4,711,328	+		EFB2_04493	0.38	-0.0
4,711,328	+		EFB2_04493	0.38	-0.2
4,711,328	+		EFB2_04493	0.38	-0.3
4,711,328	+		EFB2_04493	0.38	+0.6
4,711,328	+		EFB2_04493	0.38	+0.4
4,711,329	-		EFB2_04493	0.38	-1.2
4,711,329	-		EFB2_04493	0.38	-1.1
4,711,329	-		EFB2_04493	0.38	+0.6
4,711,329	-		EFB2_04493	0.38	+0.7
4,711,329	-		EFB2_04493	0.38	-0.5
4,711,329	-		EFB2_04493	0.38	+1.6
4,711,329	-		EFB2_04493	0.38	-2.4
4,711,329	-		EFB2_04493	0.38	-0.5
4,711,329	-		EFB2_04493	0.38	+1.1
4,711,329	-		EFB2_04493	0.38	+0.6
4,711,329	-		EFB2_04493	0.38	+1.2
4,711,329	-		EFB2_04493	0.38	+0.1
4,711,329	-		EFB2_04493	0.38	-1.9
4,711,339	+		EFB2_04493	0.39	+0.0
4,711,339	+		EFB2_04493	0.39	+1.9
4,711,339	+		EFB2_04493	0.39	+0.1
4,711,340	-		EFB2_04493	0.39	-1.5
4,711,340	-		EFB2_04493	0.39	+1.7
4,711,349	+		EFB2_04493	0.40	-0.4
4,711,350	-		EFB2_04493	0.40	-3.1
4,711,407	+		EFB2_04493	0.46	-0.0
4,711,408	-		EFB2_04493	0.47	+0.1
4,711,408	-		EFB2_04493	0.47	+1.0
4,711,431	+		EFB2_04493	0.49	-0.1
4,711,431	+		EFB2_04493	0.49	+0.4
4,711,454	+		EFB2_04493	0.52	-0.1
4,711,454	+		EFB2_04493	0.52	+0.7
4,711,454	+		EFB2_04493	0.52	+0.2
4,711,454	+		EFB2_04493	0.52	+0.0
4,711,454	+		EFB2_04493	0.52	-1.3
4,711,454	+		EFB2_04493	0.52	-0.4
4,711,455	-		EFB2_04493	0.52	-2.5
4,711,455	-		EFB2_04493	0.52	+1.3
4,711,455	-		EFB2_04493	0.52	+0.6
4,711,468	+		EFB2_04493	0.53	+0.2
4,711,468	+		EFB2_04493	0.53	+0.6
4,711,468	+		EFB2_04493	0.53	-0.3
4,711,468	+		EFB2_04493	0.53	-2.5
4,711,468	+		EFB2_04493	0.53	+1.9
4,711,468	+		EFB2_04493	0.53	-0.4
4,711,468	+		EFB2_04493	0.53	-0.7
4,711,468	+		EFB2_04493	0.53	+0.3
4,711,468	+		EFB2_04493	0.53	+0.5
4,711,468	+		EFB2_04493	0.53	-0.0
4,711,468	+		EFB2_04493	0.53	-0.4
4,711,468	+		EFB2_04493	0.53	+1.0
4,711,468	+		EFB2_04493	0.53	+1.8
4,711,468	+		EFB2_04493	0.53	-0.4
4,711,468	+		EFB2_04493	0.53	-1.3
4,711,468	+		EFB2_04493	0.53	+0.1
4,711,468	+		EFB2_04493	0.53	-0.9
4,711,468	+		EFB2_04493	0.53	-0.1
4,711,468	+		EFB2_04493	0.53	-0.6
4,711,468	+		EFB2_04493	0.53	+1.0
4,711,468	+		EFB2_04493	0.53	-0.5
4,711,468	+		EFB2_04493	0.53	+1.2
4,711,468	+		EFB2_04493	0.53	+0.8
4,711,468	+		EFB2_04493	0.53	+1.9
4,711,468	+		EFB2_04493	0.53	-1.2
4,711,469	-		EFB2_04493	0.53	-0.4
4,711,469	-		EFB2_04493	0.53	-0.5
4,711,469	-		EFB2_04493	0.53	+0.2
4,711,469	-		EFB2_04493	0.53	-0.2
4,711,469	-		EFB2_04493	0.53	+1.5
4,711,469	-		EFB2_04493	0.53	+0.0
4,711,469	-		EFB2_04493	0.53	-0.3
4,711,469	-		EFB2_04493	0.53	+0.3
4,711,469	-		EFB2_04493	0.53	-1.2
4,711,469	-		EFB2_04493	0.53	-0.4
4,711,495	+		EFB2_04493	0.56	-1.0
4,711,495	+		EFB2_04493	0.56	-0.1
4,711,496	-		EFB2_04493	0.56	-0.5
4,711,496	-		EFB2_04493	0.56	-2.1
4,711,496	-		EFB2_04493	0.56	+0.2
4,711,549	+		EFB2_04493	0.62	+1.2
4,711,550	-		EFB2_04493	0.63	-0.2
4,711,550	-		EFB2_04493	0.63	-0.7
4,711,603	+		EFB2_04493	0.68	+1.0
4,711,603	+		EFB2_04493	0.68	+0.2
4,711,603	+		EFB2_04493	0.68	-0.4
4,711,604	-		EFB2_04493	0.69	-1.1
4,711,615	+		EFB2_04493	0.70	+1.0
4,711,615	+		EFB2_04493	0.70	+0.1
4,711,616	-		EFB2_04493	0.70	-0.5
4,711,616	-		EFB2_04493	0.70	-1.4
4,711,647	-		EFB2_04493	0.73	-0.9
4,711,652	+		EFB2_04493	0.74	+1.9
4,711,653	-		EFB2_04493	0.74	-0.1
4,711,653	-		EFB2_04493	0.74	-3.6
4,711,653	-		EFB2_04493	0.74	+0.6
4,711,661	+		EFB2_04493	0.75	-0.5
4,711,661	+		EFB2_04493	0.75	-1.7
4,711,661	+		EFB2_04493	0.75	+1.0
4,711,661	+		EFB2_04493	0.75	+0.7
4,711,661	+		EFB2_04493	0.75	-0.5
4,711,661	+		EFB2_04493	0.75	+1.1
4,711,661	+		EFB2_04493	0.75	-0.5
4,711,661	+		EFB2_04493	0.75	-2.4
4,711,661	+		EFB2_04493	0.75	-0.2
4,711,661	+		EFB2_04493	0.75	-0.9
4,711,661	+		EFB2_04493	0.75	-0.4
4,711,661	+		EFB2_04493	0.75	-2.0
4,711,661	+		EFB2_04493	0.75	-0.2
4,711,661	+		EFB2_04493	0.75	-0.2
4,711,661	+		EFB2_04493	0.75	-2.5
4,711,662	-		EFB2_04493	0.75	-0.9
4,711,662	-		EFB2_04493	0.75	+0.7
4,711,662	-		EFB2_04493	0.75	-0.4
4,711,662	-		EFB2_04493	0.75	-0.9
4,711,662	-		EFB2_04493	0.75	-0.5
4,711,662	-		EFB2_04493	0.75	+2.0
4,711,662	-		EFB2_04493	0.75	-1.4
4,711,662	-		EFB2_04493	0.75	+0.9
4,711,662	-		EFB2_04493	0.75	-0.3
4,711,662	-		EFB2_04493	0.75	-1.8
4,711,662	-		EFB2_04493	0.75	+0.5
4,711,662	-		EFB2_04493	0.75	+0.5
4,711,665	+		EFB2_04493	0.75	-0.6
4,711,665	+		EFB2_04493	0.75	+0.8
4,711,665	+		EFB2_04493	0.75	-0.9
4,711,666	-		EFB2_04493	0.76	-3.0
4,711,666	-		EFB2_04493	0.76	-2.7
4,711,666	-		EFB2_04493	0.76	+0.2
4,711,666	-		EFB2_04493	0.76	-1.9
4,711,666	-		EFB2_04493	0.76	+0.4
4,711,695	+		EFB2_04493	0.79	-0.4
4,711,695	+		EFB2_04493	0.79	-0.7
4,711,695	+		EFB2_04493	0.79	-0.8
4,711,696	-		EFB2_04493	0.79	-0.5
4,711,696	-		EFB2_04493	0.79	-1.5
4,711,700	+		EFB2_04493	0.79	-4.2
4,711,732	+		EFB2_04493	0.83	-0.3
4,711,732	+		EFB2_04493	0.83	-1.2
4,711,732	+		EFB2_04493	0.83	+0.3
4,711,733	-		EFB2_04493	0.83	-0.3
4,711,733	-		EFB2_04493	0.83	-1.9
4,711,759	+		EFB2_04493	0.86	+0.7
4,711,760	-		EFB2_04493	0.86	-0.3
4,711,827	-				-0.5
4,711,827	-				-0.1
4,711,827	-				-1.4
4,711,827	-				+0.3
4,711,829	+				+1.3
4,711,830	-				+1.2
4,711,882	-				+1.3
4,711,892	+				-3.3
4,711,942	-				-0.2
4,711,947	+				-0.6
4,711,947	+				-0.5
4,711,986	-				+0.0
4,712,064	+		EFB2_04494	0.13	-1.7
4,712,064	+		EFB2_04494	0.13	+0.8
4,712,178	+		EFB2_04494	0.25	-0.2
4,712,188	+		EFB2_04494	0.26	+1.2
4,712,189	-		EFB2_04494	0.26	-0.1
4,712,263	-		EFB2_04494	0.34	-0.3
4,712,266	+		EFB2_04494	0.35	-0.9
4,712,266	+		EFB2_04494	0.35	+1.5
4,712,266	+		EFB2_04494	0.35	+1.1
4,712,266	+		EFB2_04494	0.35	+1.1
4,712,266	+		EFB2_04494	0.35	+0.7
4,712,266	+		EFB2_04494	0.35	+0.4
4,712,266	+		EFB2_04494	0.35	-1.2
4,712,266	+		EFB2_04494	0.35	-0.6
4,712,266	+		EFB2_04494	0.35	+1.7
4,712,266	+		EFB2_04494	0.35	+0.2
4,712,266	+		EFB2_04494	0.35	+0.2
4,712,266	+		EFB2_04494	0.35	-0.1
4,712,267	-		EFB2_04494	0.35	-0.0
4,712,267	-		EFB2_04494	0.35	-1.0
4,712,267	-		EFB2_04494	0.35	+0.6
4,712,267	-		EFB2_04494	0.35	-0.1
4,712,267	-		EFB2_04494	0.35	+0.3
4,712,267	-		EFB2_04494	0.35	+1.0
4,712,301	+		EFB2_04494	0.38	-0.3
4,712,302	-		EFB2_04494	0.38	+2.1
4,712,302	-		EFB2_04494	0.38	-0.0
4,712,385	+		EFB2_04494	0.47	-0.4
4,712,386	-		EFB2_04494	0.47	-0.2
4,712,467	-		EFB2_04494	0.56	-0.7
4,712,542	-		EFB2_04494	0.64	+1.9
4,712,542	-		EFB2_04494	0.64	-0.6
4,712,542	-		EFB2_04494	0.64	-2.4
4,712,542	-		EFB2_04494	0.64	-3.0
4,712,544	+		EFB2_04494	0.64	-0.3
4,712,545	-		EFB2_04494	0.64	+0.4
4,712,545	-		EFB2_04494	0.64	+0.9
4,712,545	-		EFB2_04494	0.64	-2.1
4,712,545	-		EFB2_04494	0.64	-1.9
4,712,565	+		EFB2_04494	0.67	+0.9
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