Strain Fitness in Escherichia fergusonii Becca around EFB2_03730

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,903,841	+				+2.2
3,903,841	+				+1.0
3,903,841	+				+1.6
3,903,841	+				-0.5
3,903,842	-				+1.1
3,903,842	-				-1.1
3,903,867	+				-1.0
3,903,867	+				-1.2
3,903,886	+		EFB2_03728	0.13	-0.2
3,903,887	-		EFB2_03728	0.13	+0.5
3,903,887	-		EFB2_03728	0.13	-2.4
3,903,887	-		EFB2_03728	0.13	+0.2
3,903,887	-		EFB2_03728	0.13	+0.2
3,903,890	-		EFB2_03728	0.16	-0.3
3,903,909	-		EFB2_03728	0.29	-1.5
3,903,919	+		EFB2_03728	0.36	-2.6
3,903,919	+		EFB2_03728	0.36	-0.3
3,903,920	-		EFB2_03728	0.37	+1.1
3,903,920	-		EFB2_03728	0.37	+1.0
3,903,926	+		EFB2_03728	0.41	+0.8
3,903,926	+		EFB2_03728	0.41	+0.2
3,903,926	+		EFB2_03728	0.41	-0.4
3,903,926	+		EFB2_03728	0.41	+2.2
3,903,926	+		EFB2_03728	0.41	-0.1
3,903,926	+		EFB2_03728	0.41	-1.5
3,903,926	+		EFB2_03728	0.41	-0.2
3,903,926	+		EFB2_03728	0.41	-0.5
3,903,926	+		EFB2_03728	0.41	+0.4
3,903,926	+		EFB2_03728	0.41	+0.2
3,903,926	+		EFB2_03728	0.41	-2.5
3,903,926	+		EFB2_03728	0.41	+1.6
3,903,926	+		EFB2_03728	0.41	-1.4
3,903,927	-		EFB2_03728	0.42	-1.0
3,903,927	-		EFB2_03728	0.42	+0.1
3,903,927	-		EFB2_03728	0.42	+0.7
3,903,927	-		EFB2_03728	0.42	-1.0
3,903,927	-		EFB2_03728	0.42	-0.3
3,903,927	-		EFB2_03728	0.42	-0.6
3,903,938	+		EFB2_03728	0.50	-0.1
3,903,938	+		EFB2_03728	0.50	-1.2
3,903,939	-		EFB2_03728	0.50	-1.3
3,903,939	-		EFB2_03728	0.50	-0.0
3,903,939	-		EFB2_03728	0.50	+1.1
3,903,979	+		EFB2_03728	0.79	-2.3
3,903,980	-		EFB2_03728	0.79	-0.5
3,903,980	-		EFB2_03728	0.79	-0.4
3,903,980	-		EFB2_03728	0.79	+0.1
3,903,980	-		EFB2_03728	0.79	-3.2
3,903,988	+		EFB2_03728	0.85	+0.7
3,903,988	+		EFB2_03728	0.85	+1.0
3,903,988	+		EFB2_03728	0.85	+0.2
3,903,989	-		EFB2_03728	0.86	-3.0
3,903,989	-		EFB2_03728	0.86	-3.8
3,903,989	-		EFB2_03728	0.86	+0.6
3,904,004	-				-1.2
3,904,004	-				-0.8
3,904,059	+				-0.7
3,904,059	+				+0.6
3,904,059	+				-0.5
3,904,060	-				+0.5
3,904,080	+				+0.3
3,904,080	+				-4.5
3,904,080	+				-3.1
3,904,081	-				-2.6
3,904,081	-				+0.3
3,904,081	-				-3.3
3,904,081	-				+0.4
3,904,105	+		EFB2_03729	0.10	-0.3
3,904,105	+		EFB2_03729	0.10	+0.1
3,904,106	-		EFB2_03729	0.11	+0.4
3,904,106	-		EFB2_03729	0.11	+2.1
3,904,131	+		EFB2_03729	0.14	-1.0
3,904,132	-		EFB2_03729	0.14	+1.0
3,904,132	-		EFB2_03729	0.14	+1.3
3,904,132	-		EFB2_03729	0.14	-2.9
3,904,138	+		EFB2_03729	0.15	-1.7
3,904,138	+		EFB2_03729	0.15	-0.6
3,904,139	-		EFB2_03729	0.15	-4.1
3,904,139	-		EFB2_03729	0.15	+1.8
3,904,217	+		EFB2_03729	0.25	+0.9
3,904,242	+		EFB2_03729	0.28	-2.2
3,904,242	+		EFB2_03729	0.28	+0.1
3,904,242	+		EFB2_03729	0.28	+0.7
3,904,242	+		EFB2_03729	0.28	+0.5
3,904,242	+		EFB2_03729	0.28	-1.2
3,904,242	+		EFB2_03729	0.28	+0.8
3,904,242	+		EFB2_03729	0.28	+0.1
3,904,243	-		EFB2_03729	0.29	+0.7
3,904,243	-		EFB2_03729	0.29	-1.3
3,904,243	-		EFB2_03729	0.29	-0.9
3,904,243	-		EFB2_03729	0.29	-0.2
3,904,243	-		EFB2_03729	0.29	-0.4
3,904,243	-		EFB2_03729	0.29	+1.3
3,904,243	-		EFB2_03729	0.29	+1.1
3,904,243	-		EFB2_03729	0.29	-1.4
3,904,243	-		EFB2_03729	0.29	+0.5
3,904,243	-		EFB2_03729	0.29	+1.4
3,904,282	+		EFB2_03729	0.34	-2.7
3,904,282	+		EFB2_03729	0.34	-0.9
3,904,283	-		EFB2_03729	0.34	+0.5
3,904,283	-		EFB2_03729	0.34	-0.8
3,904,312	-		EFB2_03729	0.38	-0.7
3,904,332	+		EFB2_03729	0.40	+1.8
3,904,332	+		EFB2_03729	0.40	-0.9
3,904,332	+		EFB2_03729	0.40	-0.8
3,904,333	-		EFB2_03729	0.40	+0.3
3,904,333	-		EFB2_03729	0.40	-0.1
3,904,333	-		EFB2_03729	0.40	-1.2
3,904,342	+		EFB2_03729	0.42	+0.6
3,904,342	+		EFB2_03729	0.42	+0.0
3,904,342	+		EFB2_03729	0.42	-1.4
3,904,343	-		EFB2_03729	0.42	+0.3
3,904,405	+		EFB2_03729	0.50	-0.7
3,904,405	+		EFB2_03729	0.50	+0.9
3,904,405	+		EFB2_03729	0.50	-3.4
3,904,405	+		EFB2_03729	0.50	+0.8
3,904,405	+		EFB2_03729	0.50	+0.9
3,904,406	-		EFB2_03729	0.50	-0.0
3,904,406	-		EFB2_03729	0.50	+0.2
3,904,415	+		EFB2_03729	0.51	+1.9
3,904,415	+		EFB2_03729	0.51	-1.9
3,904,415	+		EFB2_03729	0.51	-1.5
3,904,415	+		EFB2_03729	0.51	-1.1
3,904,415	+		EFB2_03729	0.51	-2.9
3,904,415	+		EFB2_03729	0.51	+0.2
3,904,415	+		EFB2_03729	0.51	-2.1
3,904,415	+		EFB2_03729	0.51	-0.1
3,904,415	+		EFB2_03729	0.51	+1.1
3,904,415	+		EFB2_03729	0.51	+1.4
3,904,415	+		EFB2_03729	0.51	-1.9
3,904,415	+		EFB2_03729	0.51	+0.4
3,904,415	+		EFB2_03729	0.51	-0.8
3,904,415	+		EFB2_03729	0.51	+0.4
3,904,415	+		EFB2_03729	0.51	+0.2
3,904,415	+		EFB2_03729	0.51	+0.4
3,904,415	+		EFB2_03729	0.51	-0.5
3,904,415	+		EFB2_03729	0.51	+0.6
3,904,415	+		EFB2_03729	0.51	+0.1
3,904,416	-		EFB2_03729	0.51	+0.2
3,904,416	-		EFB2_03729	0.51	-1.7
3,904,416	-		EFB2_03729	0.51	-2.2
3,904,416	-		EFB2_03729	0.51	-1.4
3,904,416	-		EFB2_03729	0.51	+1.4
3,904,416	-		EFB2_03729	0.51	+1.6
3,904,416	-		EFB2_03729	0.51	-2.7
3,904,416	-		EFB2_03729	0.51	-1.8
3,904,416	-		EFB2_03729	0.51	+0.8
3,904,416	-		EFB2_03729	0.51	-0.1
3,904,416	-		EFB2_03729	0.51	+1.3
3,904,416	-		EFB2_03729	0.51	-3.4
3,904,427	-		EFB2_03729	0.53	+0.4
3,904,427	-		EFB2_03729	0.53	+1.6
3,904,442	-		EFB2_03729	0.55	-0.8
3,904,532	+		EFB2_03729	0.67	+1.1
3,904,532	+		EFB2_03729	0.67	-0.3
3,904,532	+		EFB2_03729	0.67	+0.1
3,904,532	+		EFB2_03729	0.67	-1.6
3,904,533	-		EFB2_03729	0.67	+0.9
3,904,533	-		EFB2_03729	0.67	-0.5
3,904,560	+		EFB2_03729	0.70	+0.4
3,904,560	+		EFB2_03729	0.70	+1.3
3,904,560	+		EFB2_03729	0.70	+0.4
3,904,561	-		EFB2_03729	0.70	-0.0
3,904,569	+		EFB2_03729	0.71	+1.4
3,904,569	+		EFB2_03729	0.71	+0.1
3,904,569	+		EFB2_03729	0.71	+0.9
3,904,570	-		EFB2_03729	0.72	-2.2
3,904,570	-		EFB2_03729	0.72	-1.0
3,904,570	-		EFB2_03729	0.72	+0.5
3,904,613	+		EFB2_03729	0.77	-0.5
3,904,613	+		EFB2_03729	0.77	+0.9
3,904,614	-		EFB2_03729	0.77	+0.3
3,904,614	-		EFB2_03729	0.77	-1.6
3,904,614	-		EFB2_03729	0.77	-1.8
3,904,614	-		EFB2_03729	0.77	-0.9
3,904,614	-		EFB2_03729	0.77	+1.3
3,904,614	-		EFB2_03729	0.77	-1.2
3,904,614	-		EFB2_03729	0.77	+0.2
3,904,614	-		EFB2_03729	0.77	-1.4
3,904,720	+				-0.1
3,904,721	-				-1.8
3,904,721	-				-2.8
3,904,730	+				-0.7
3,904,743	+				+0.8
3,904,744	-				-0.9
3,904,744	-				-0.2
3,904,744	-				-0.5
3,904,764	+				+1.3
3,904,764	+				-2.5
3,904,774	+				-2.2
3,904,775	-				-0.4
3,904,778	+				+0.8
3,904,779	-				-0.2
3,904,779	-				-0.0
3,904,779	-				-0.8
3,904,780	+				-1.1
3,904,780	+				+0.7
3,904,780	+				-0.1
3,904,781	-				+0.6
3,904,784	+				+0.0
3,904,785	-				-0.2
3,904,785	-				-1.0
3,904,785	-				-0.2
3,904,802	+				-0.7
3,904,872	+				+0.9
3,904,872	+				-0.1
3,904,872	+				-1.0
3,904,872	+				-0.9
3,904,872	+				-1.2
3,904,873	-				+1.2
3,904,878	+				+0.1
3,904,911	+				-0.8
3,904,944	+				-0.5
3,904,950	+				+0.1
3,904,951	-				-0.7
3,904,977	+				+0.4
3,904,980	+				+0.3
3,904,986	+				+0.0
3,904,987	-				+0.6
3,905,019	+				+0.2
3,905,020	-				-1.9
3,905,040	+				+0.6
3,905,040	+				-0.7
3,905,040	+				-0.8
3,905,041	-				+0.3
3,905,064	+		EFB2_03730	0.10	+1.1
3,905,064	+		EFB2_03730	0.10	+0.9
3,905,064	+		EFB2_03730	0.10	-1.1
3,905,066	+		EFB2_03730	0.10	+1.8
3,905,067	+		EFB2_03730	0.10	-0.2
3,905,067	+		EFB2_03730	0.10	+0.1
3,905,067	+		EFB2_03730	0.10	-1.1
3,905,108	+		EFB2_03730	0.12	-2.1
3,905,109	-		EFB2_03730	0.12	-1.8
3,905,140	-		EFB2_03730	0.14	+1.3
3,905,140	-		EFB2_03730	0.14	-2.4
3,905,145	+		EFB2_03730	0.14	-2.7
3,905,145	+		EFB2_03730	0.14	+1.1
3,905,146	-		EFB2_03730	0.14	+0.2
3,905,182	+		EFB2_03730	0.15	-1.0
3,905,182	+		EFB2_03730	0.15	-1.6
3,905,182	+		EFB2_03730	0.15	-1.0
3,905,182	+		EFB2_03730	0.15	-1.1
3,905,182	+		EFB2_03730	0.15	-0.0
3,905,183	-		EFB2_03730	0.15	+0.1
3,905,183	-		EFB2_03730	0.15	-1.9
3,905,183	-		EFB2_03730	0.15	-3.2
3,905,183	-		EFB2_03730	0.15	+0.3
3,905,183	-		EFB2_03730	0.15	-0.5
3,905,183	-		EFB2_03730	0.15	+3.1
3,905,183	-		EFB2_03730	0.15	+0.9
3,905,183	-		EFB2_03730	0.15	-1.1
3,905,183	-		EFB2_03730	0.15	-0.6
3,905,229	+		EFB2_03730	0.17	+1.8
3,905,266	-		EFB2_03730	0.19	-0.1
3,905,330	+		EFB2_03730	0.22	-0.2
3,905,330	+		EFB2_03730	0.22	-0.3
3,905,330	+		EFB2_03730	0.22	+0.4
3,905,330	+		EFB2_03730	0.22	-3.1
3,905,330	+		EFB2_03730	0.22	+0.4
3,905,330	+		EFB2_03730	0.22	+0.1
3,905,330	+		EFB2_03730	0.22	+0.5
3,905,330	+		EFB2_03730	0.22	-0.2
3,905,331	-		EFB2_03730	0.22	-0.5
3,905,331	-		EFB2_03730	0.22	+1.2
3,905,331	-		EFB2_03730	0.22	+1.3
3,905,331	-		EFB2_03730	0.22	+0.8
3,905,331	-		EFB2_03730	0.22	-1.1
3,905,331	-		EFB2_03730	0.22	-2.2
3,905,331	-		EFB2_03730	0.22	+0.2
3,905,343	+		EFB2_03730	0.22	+0.5
3,905,343	+		EFB2_03730	0.22	+1.3
3,905,344	-		EFB2_03730	0.22	+0.9
3,905,346	+		EFB2_03730	0.23	-1.0
3,905,396	+		EFB2_03730	0.25	+1.7
3,905,396	+		EFB2_03730	0.25	+0.8
3,905,396	+		EFB2_03730	0.25	-0.8
3,905,397	-		EFB2_03730	0.25	-0.3
3,905,397	-		EFB2_03730	0.25	-0.3
3,905,451	+		EFB2_03730	0.27	+0.3
3,905,452	-		EFB2_03730	0.27	-1.5
3,905,452	-		EFB2_03730	0.27	-2.1
3,905,477	+		EFB2_03730	0.28	+0.0
3,905,478	-		EFB2_03730	0.28	-2.0
3,905,481	+		EFB2_03730	0.28	-1.9
3,905,481	+		EFB2_03730	0.28	+0.8
3,905,482	-		EFB2_03730	0.28	+0.8
3,905,493	+		EFB2_03730	0.29	+0.3
3,905,493	+		EFB2_03730	0.29	-0.7
3,905,508	+		EFB2_03730	0.30	+1.1
3,905,509	-		EFB2_03730	0.30	-1.3
3,905,527	-		EFB2_03730	0.30	+0.4
3,905,540	+		EFB2_03730	0.31	+0.0
3,905,557	-		EFB2_03730	0.32	-1.4
3,905,557	-		EFB2_03730	0.32	-0.3
3,905,557	-		EFB2_03730	0.32	+2.2
3,905,559	+		EFB2_03730	0.32	-0.5
3,905,647	+		EFB2_03730	0.36	-0.4
3,905,647	+		EFB2_03730	0.36	-1.2
3,905,647	+		EFB2_03730	0.36	+0.6
3,905,647	+		EFB2_03730	0.36	-0.9
3,905,647	+		EFB2_03730	0.36	+0.7
3,905,648	-		EFB2_03730	0.36	-3.2
3,905,648	-		EFB2_03730	0.36	+0.4
3,905,648	-		EFB2_03730	0.36	-1.1
3,905,648	-		EFB2_03730	0.36	+2.3
3,905,648	-		EFB2_03730	0.36	+0.9
3,905,705	+		EFB2_03730	0.38	+0.3
3,905,706	-		EFB2_03730	0.38	+0.2
3,905,706	-		EFB2_03730	0.38	-1.6
3,905,709	+		EFB2_03730	0.38	+0.0
3,905,709	+		EFB2_03730	0.38	+1.2
3,905,709	+		EFB2_03730	0.38	+1.2
3,905,710	-		EFB2_03730	0.38	+3.0
3,905,710	-		EFB2_03730	0.38	-0.5
3,905,710	-		EFB2_03730	0.38	+0.7
3,905,739	+		EFB2_03730	0.40	+1.2
3,905,739	+		EFB2_03730	0.40	-2.6
3,905,739	+		EFB2_03730	0.40	-1.4
3,905,740	-		EFB2_03730	0.40	-0.1
3,905,740	-		EFB2_03730	0.40	-0.4
3,905,740	-		EFB2_03730	0.40	+0.4
3,905,746	+		EFB2_03730	0.40	+1.1
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