Strain Fitness in Escherichia fergusonii Becca around EFB2_03658

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,824,498	+		EFB2_03657	0.29	-1.9
3,824,498	+		EFB2_03657	0.29	-2.0
3,824,499	-		EFB2_03657	0.29	-3.0
3,824,499	-		EFB2_03657	0.29	-0.5
3,824,509	+		EFB2_03657	0.30	-2.8
3,824,509	+		EFB2_03657	0.30	-0.4
3,824,509	+		EFB2_03657	0.30	+0.9
3,824,510	-		EFB2_03657	0.30	+0.0
3,824,510	-		EFB2_03657	0.30	-1.6
3,824,510	-		EFB2_03657	0.30	-0.3
3,824,510	-		EFB2_03657	0.30	-1.7
3,824,510	-		EFB2_03657	0.30	+0.1
3,824,510	-		EFB2_03657	0.30	-0.4
3,824,616	-		EFB2_03657	0.39	+1.0
3,824,616	-		EFB2_03657	0.39	-1.9
3,824,740	-		EFB2_03657	0.48	+3.1
3,824,747	+		EFB2_03657	0.49	+3.7
3,824,747	+		EFB2_03657	0.49	+4.4
3,824,747	+		EFB2_03657	0.49	-3.2
3,824,764	+		EFB2_03657	0.50	+2.2
3,824,764	+		EFB2_03657	0.50	+0.9
3,824,765	-		EFB2_03657	0.50	+2.2
3,824,768	+		EFB2_03657	0.50	+0.0
3,824,768	+		EFB2_03657	0.50	+0.1
3,824,768	+		EFB2_03657	0.50	-2.2
3,824,768	+		EFB2_03657	0.50	+0.9
3,824,768	+		EFB2_03657	0.50	+0.1
3,824,768	+		EFB2_03657	0.50	+0.7
3,824,768	+		EFB2_03657	0.50	-0.1
3,824,768	+		EFB2_03657	0.50	+0.3
3,824,768	+		EFB2_03657	0.50	-1.8
3,824,768	+		EFB2_03657	0.50	+0.3
3,824,768	+		EFB2_03657	0.50	-0.3
3,824,768	+		EFB2_03657	0.50	+0.7
3,824,768	+		EFB2_03657	0.50	-2.0
3,824,768	+		EFB2_03657	0.50	+0.8
3,824,769	-		EFB2_03657	0.50	-0.9
3,824,769	-		EFB2_03657	0.50	-1.4
3,824,769	-		EFB2_03657	0.50	+0.3
3,824,769	-		EFB2_03657	0.50	+1.6
3,824,769	-		EFB2_03657	0.50	-0.5
3,824,769	-		EFB2_03657	0.50	+0.5
3,824,769	-		EFB2_03657	0.50	+0.1
3,824,769	-		EFB2_03657	0.50	+0.9
3,824,769	-		EFB2_03657	0.50	-0.1
3,824,769	-		EFB2_03657	0.50	+0.2
3,824,769	-		EFB2_03657	0.50	+1.5
3,824,769	-		EFB2_03657	0.50	+1.1
3,824,769	-		EFB2_03657	0.50	-1.7
3,824,769	-		EFB2_03657	0.50	+1.7
3,824,866	+		EFB2_03657	0.58	-0.2
3,824,867	-		EFB2_03657	0.58	+0.3
3,824,867	-		EFB2_03657	0.58	+0.1
3,824,867	-		EFB2_03657	0.58	-0.4
3,824,867	-		EFB2_03657	0.58	-0.5
3,824,867	-		EFB2_03657	0.58	+1.1
3,824,867	-		EFB2_03657	0.58	+0.3
3,824,868	+		EFB2_03657	0.58	-1.2
3,824,868	+		EFB2_03657	0.58	-0.5
3,824,868	+		EFB2_03657	0.58	+0.3
3,824,868	+		EFB2_03657	0.58	-0.9
3,824,868	+		EFB2_03657	0.58	+1.2
3,824,868	+		EFB2_03657	0.58	-2.0
3,824,868	+		EFB2_03657	0.58	+0.0
3,824,868	+		EFB2_03657	0.58	+0.4
3,824,868	+		EFB2_03657	0.58	+0.4
3,824,868	+		EFB2_03657	0.58	+0.6
3,824,868	+		EFB2_03657	0.58	+0.9
3,824,869	-		EFB2_03657	0.58	-2.1
3,824,869	-		EFB2_03657	0.58	+1.7
3,824,869	-		EFB2_03657	0.58	+0.2
3,824,869	-		EFB2_03657	0.58	+0.2
3,824,869	-		EFB2_03657	0.58	+2.1
3,824,869	-		EFB2_03657	0.58	+1.4
3,824,869	-		EFB2_03657	0.58	+0.3
3,824,869	-		EFB2_03657	0.58	+0.9
3,824,869	-		EFB2_03657	0.58	+1.3
3,824,950	-		EFB2_03657	0.64	-2.8
3,824,950	-		EFB2_03657	0.64	-2.6
3,824,956	+		EFB2_03657	0.65	+0.3
3,824,980	+		EFB2_03657	0.67	-0.0
3,824,980	+		EFB2_03657	0.67	+0.5
3,824,981	-		EFB2_03657	0.67	-2.2
3,824,998	+		EFB2_03657	0.68	+0.5
3,824,998	+		EFB2_03657	0.68	+2.7
3,825,056	-		EFB2_03657	0.72	-2.5
3,825,109	+		EFB2_03657	0.77	-2.0
3,825,121	+		EFB2_03657	0.77	-0.0
3,825,121	+		EFB2_03657	0.77	-1.8
3,825,155	-		EFB2_03657	0.80	-0.4
3,825,155	-		EFB2_03657	0.80	+0.1
3,825,155	-		EFB2_03657	0.80	+1.0
3,825,176	+		EFB2_03657	0.82	-1.8
3,825,177	-		EFB2_03657	0.82	-1.6
3,825,177	-		EFB2_03657	0.82	+1.1
3,825,177	-		EFB2_03657	0.82	+0.0
3,825,177	-		EFB2_03657	0.82	-0.1
3,825,177	-		EFB2_03657	0.82	-0.9
3,825,177	-		EFB2_03657	0.82	-1.9
3,825,183	+		EFB2_03657	0.82	-3.6
3,825,183	+		EFB2_03657	0.82	-0.5
3,825,184	-		EFB2_03657	0.82	+0.3
3,825,184	-		EFB2_03657	0.82	+0.4
3,825,184	-		EFB2_03657	0.82	-0.4
3,825,185	+		EFB2_03657	0.82	-0.0
3,825,185	+		EFB2_03657	0.82	+0.6
3,825,185	+		EFB2_03657	0.82	+1.0
3,825,185	+		EFB2_03657	0.82	-2.0
3,825,185	+		EFB2_03657	0.82	-2.3
3,825,185	+		EFB2_03657	0.82	-0.1
3,825,185	+		EFB2_03657	0.82	-0.9
3,825,185	+		EFB2_03657	0.82	-1.6
3,825,185	+		EFB2_03657	0.82	+1.1
3,825,185	+		EFB2_03657	0.82	+0.8
3,825,186	-		EFB2_03657	0.82	-3.0
3,825,186	-		EFB2_03657	0.82	+2.1
3,825,186	-		EFB2_03657	0.82	+0.6
3,825,186	-		EFB2_03657	0.82	-0.2
3,825,186	-		EFB2_03657	0.82	-1.7
3,825,186	-		EFB2_03657	0.82	-0.3
3,825,186	-		EFB2_03657	0.82	-0.0
3,825,186	-		EFB2_03657	0.82	-2.5
3,825,186	-		EFB2_03657	0.82	-3.8
3,825,186	-		EFB2_03657	0.82	-0.9
3,825,186	-		EFB2_03657	0.82	-2.4
3,825,188	+		EFB2_03657	0.83	-1.4
3,825,188	+		EFB2_03657	0.83	+0.4
3,825,188	+		EFB2_03657	0.83	-0.6
3,825,189	-		EFB2_03657	0.83	-1.4
3,825,202	+		EFB2_03657	0.84	-0.3
3,825,202	+		EFB2_03657	0.84	+1.8
3,825,203	-		EFB2_03657	0.84	+1.1
3,825,203	-		EFB2_03657	0.84	-2.1
3,825,203	-		EFB2_03657	0.84	-0.2
3,825,226	+		EFB2_03657	0.86	-1.0
3,825,226	+		EFB2_03657	0.86	+0.8
3,825,226	+		EFB2_03657	0.86	+0.7
3,825,226	+		EFB2_03657	0.86	-0.9
3,825,226	+		EFB2_03657	0.86	-0.8
3,825,226	+		EFB2_03657	0.86	+1.5
3,825,226	+		EFB2_03657	0.86	+0.5
3,825,226	+		EFB2_03657	0.86	-1.2
3,825,227	-		EFB2_03657	0.86	+1.2
3,825,227	-		EFB2_03657	0.86	-0.8
3,825,227	-		EFB2_03657	0.86	+0.2
3,825,227	-		EFB2_03657	0.86	+3.9
3,825,227	-		EFB2_03657	0.86	-2.7
3,825,227	-		EFB2_03657	0.86	-1.0
3,825,227	-		EFB2_03657	0.86	+1.7
3,825,229	+		EFB2_03657	0.86	-0.8
3,825,229	+		EFB2_03657	0.86	-2.7
3,825,229	+		EFB2_03657	0.86	-0.5
3,825,229	+		EFB2_03657	0.86	-1.0
3,825,229	+		EFB2_03657	0.86	-0.9
3,825,229	+		EFB2_03657	0.86	+3.5
3,825,229	+		EFB2_03657	0.86	-0.6
3,825,229	+		EFB2_03657	0.86	-0.5
3,825,229	+		EFB2_03657	0.86	-2.6
3,825,229	+		EFB2_03657	0.86	+3.3
3,825,229	+		EFB2_03657	0.86	+0.8
3,825,230	-		EFB2_03657	0.86	-1.9
3,825,230	-		EFB2_03657	0.86	+1.2
3,825,230	-		EFB2_03657	0.86	+0.2
3,825,230	-		EFB2_03657	0.86	-0.2
3,825,230	-		EFB2_03657	0.86	-1.3
3,825,230	-		EFB2_03657	0.86	+0.2
3,825,230	-		EFB2_03657	0.86	-2.1
3,825,230	-		EFB2_03657	0.86	-0.7
3,825,230	-		EFB2_03657	0.86	+0.5
3,825,230	-		EFB2_03657	0.86	-2.7
3,825,230	-		EFB2_03657	0.86	-0.8
3,825,230	-		EFB2_03657	0.86	+0.1
3,825,230	-		EFB2_03657	0.86	-0.0
3,825,230	-		EFB2_03657	0.86	+0.0
3,825,263	+		EFB2_03657	0.88	+1.5
3,825,264	-		EFB2_03657	0.89	+0.8
3,825,264	-		EFB2_03657	0.89	-1.0
3,825,283	+				-1.7
3,825,283	+				+1.0
3,825,283	+				+0.7
3,825,283	+				+0.2
3,825,284	-				+1.0
3,825,284	-				-0.3
3,825,284	-				-2.3
3,825,284	-				+0.1
3,825,324	+				-1.2
3,825,324	+				-0.6
3,825,368	+				-0.4
3,825,368	+				+0.3
3,825,368	+				-2.8
3,825,368	+				+2.0
3,825,369	-				+0.7
3,825,369	-				+1.3
3,825,369	-				+0.1
3,825,369	-				+0.8
3,825,369	-				+0.7
3,825,369	-				+0.1
3,825,369	-				-2.9
3,825,414	+				-1.1
3,825,414	+				-1.4
3,825,414	+				+0.4
3,825,414	+				+0.3
3,825,414	+				+1.2
3,825,414	+				+0.3
3,825,414	+				+0.1
3,825,414	+				-0.2
3,825,414	+				-0.6
3,825,414	+				-2.2
3,825,414	+				+0.9
3,825,414	+				-0.4
3,825,414	+				+0.1
3,825,415	-				-1.5
3,825,415	-				+1.3
3,825,415	-				-1.7
3,825,415	-				-0.4
3,825,415	-				-0.5
3,825,415	-				-1.5
3,825,415	-				-2.4
3,825,415	-				+1.0
3,825,415	-				-1.7
3,825,419	+				-1.3
3,825,419	+				-0.6
3,825,419	+				+0.2
3,825,419	+				-2.2
3,825,420	-				+0.0
3,825,420	-				-0.2
3,825,420	-				-3.8
3,825,420	-				+0.6
3,825,438	+				-2.6
3,825,439	-				+0.0
3,825,439	-				+0.7
3,825,439	-				+1.3
3,825,450	+				+1.1
3,825,450	+				+0.0
3,825,450	+				+0.2
3,825,450	+				+0.1
3,825,451	-				-0.4
3,825,451	-				+0.6
3,825,451	-				-1.6
3,825,451	-				+0.1
3,825,451	-				-2.1
3,825,451	-				+1.1
3,825,451	-				-0.3
3,825,451	-				+1.2
3,825,451	-				-2.2
3,825,451	-				-0.2
3,825,471	+				-0.3
3,825,471	+				-1.0
3,825,472	-				-0.2
3,825,472	-				+0.4
3,825,550	+		EFB2_03658	0.12	+0.7
3,825,580	+		EFB2_03658	0.16	+1.1
3,825,581	-		EFB2_03658	0.16	+0.1
3,825,594	+		EFB2_03658	0.18	+2.3
3,825,594	+		EFB2_03658	0.18	+0.9
3,825,594	+		EFB2_03658	0.18	+0.8
3,825,594	+		EFB2_03658	0.18	-0.1
3,825,594	+		EFB2_03658	0.18	+0.6
3,825,594	+		EFB2_03658	0.18	-0.2
3,825,594	+		EFB2_03658	0.18	-1.3
3,825,594	+		EFB2_03658	0.18	+1.0
3,825,594	+		EFB2_03658	0.18	-3.4
3,825,594	+		EFB2_03658	0.18	+0.9
3,825,594	+		EFB2_03658	0.18	+0.7
3,825,594	+		EFB2_03658	0.18	+1.3
3,825,595	-		EFB2_03658	0.18	-0.9
3,825,595	-		EFB2_03658	0.18	+0.1
3,825,595	-		EFB2_03658	0.18	-1.0
3,825,595	-		EFB2_03658	0.18	-0.7
3,825,595	-		EFB2_03658	0.18	+0.1
3,825,595	-		EFB2_03658	0.18	+0.6
3,825,595	-		EFB2_03658	0.18	-2.6
3,825,595	-		EFB2_03658	0.18	-0.0
3,825,595	-		EFB2_03658	0.18	-1.2
3,825,595	-		EFB2_03658	0.18	+0.2
3,825,595	-		EFB2_03658	0.18	-0.5
3,825,595	-		EFB2_03658	0.18	-2.2
3,825,595	-		EFB2_03658	0.18	-2.0
3,825,595	-		EFB2_03658	0.18	+0.2
3,825,595	-		EFB2_03658	0.18	+0.3
3,825,595	-		EFB2_03658	0.18	+1.1
3,825,595	-		EFB2_03658	0.18	+0.4
3,825,595	-		EFB2_03658	0.18	+0.1
3,825,595	-		EFB2_03658	0.18	+0.8
3,825,620	+		EFB2_03658	0.22	+1.6
3,825,620	+		EFB2_03658	0.22	-2.8
3,825,620	+		EFB2_03658	0.22	-1.3
3,825,620	+		EFB2_03658	0.22	+0.8
3,825,621	-		EFB2_03658	0.22	-1.9
3,825,639	+		EFB2_03658	0.24	+1.1
3,825,639	+		EFB2_03658	0.24	+0.0
3,825,639	+		EFB2_03658	0.24	+0.1
3,825,640	-		EFB2_03658	0.25	-0.2
3,825,679	+		EFB2_03658	0.30	-1.3
3,825,749	+		EFB2_03658	0.40	-0.9
3,825,749	+		EFB2_03658	0.40	+1.6
3,825,749	+		EFB2_03658	0.40	-0.7
3,825,750	-		EFB2_03658	0.41	+0.4
3,825,793	+		EFB2_03658	0.47	+0.2
3,825,794	-		EFB2_03658	0.47	+0.1
3,825,803	+		EFB2_03658	0.48	+1.5
3,825,853	+		EFB2_03658	0.56	+0.5
3,825,853	+		EFB2_03658	0.56	+0.1
3,825,853	+		EFB2_03658	0.56	-1.1
3,825,853	+		EFB2_03658	0.56	+0.1
3,825,853	+		EFB2_03658	0.56	+0.5
3,825,853	+		EFB2_03658	0.56	+0.6
3,825,853	+		EFB2_03658	0.56	-1.8
3,825,854	-		EFB2_03658	0.56	+0.1
3,825,854	-		EFB2_03658	0.56	-1.2
3,825,854	-		EFB2_03658	0.56	-1.0
3,825,854	-		EFB2_03658	0.56	+0.2
3,825,854	-		EFB2_03658	0.56	-0.4
3,825,854	-		EFB2_03658	0.56	+0.0
3,825,854	-		EFB2_03658	0.56	-2.9
3,825,854	-		EFB2_03658	0.56	-0.3
3,825,854	-		EFB2_03658	0.56	+0.2
3,825,854	-		EFB2_03658	0.56	-0.1
3,825,854	-		EFB2_03658	0.56	-1.6
3,825,854	-		EFB2_03658	0.56	-0.2
3,825,854	-		EFB2_03658	0.56	+0.0
3,825,855	+		EFB2_03658	0.56	+0.1
3,825,855	+		EFB2_03658	0.56	+0.1
3,825,855	+		EFB2_03658	0.56	-0.1
3,825,855	+		EFB2_03658	0.56	+0.6
3,825,855	+		EFB2_03658	0.56	+1.9
3,825,855	+		EFB2_03658	0.56	-1.8
3,825,855	+		EFB2_03658	0.56	-0.7
3,825,855	+		EFB2_03658	0.56	+0.6
3,825,855	+		EFB2_03658	0.56	-0.1
3,825,855	+		EFB2_03658	0.56	-0.4
3,825,855	+		EFB2_03658	0.56	-1.2
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