Strain Fitness in Escherichia fergusonii Becca around EFB2_03484

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,632,238	-				-0.7
3,632,241	-				+2.1
3,632,254	-				-2.0
3,632,265	+				+2.0
3,632,265	+				+0.4
3,632,265	+				-0.7
3,632,266	-				-1.9
3,632,266	-				-1.5
3,632,280	-				-0.3
3,632,293	+				+1.0
3,632,293	+				+2.1
3,632,294	-				+0.1
3,632,300	+				-1.9
3,632,300	+				-1.2
3,632,300	+				-0.1
3,632,301	-				-1.7
3,632,301	-				-0.4
3,632,301	-				-2.8
3,632,301	-				-0.1
3,632,302	+				+0.4
3,632,302	+				-0.8
3,632,302	+				-1.6
3,632,302	+				-0.7
3,632,302	+				+0.4
3,632,302	+				+0.6
3,632,302	+				-2.2
3,632,302	+				+0.4
3,632,302	+				-0.5
3,632,302	+				+1.3
3,632,302	+				+0.9
3,632,302	+				+0.2
3,632,303	-				-0.7
3,632,303	-				-0.9
3,632,303	-				-0.4
3,632,303	-				-0.8
3,632,303	-				-2.6
3,632,303	-				+0.3
3,632,306	+				+2.2
3,632,306	+				+0.3
3,632,306	+				+0.5
3,632,306	+				+0.1
3,632,306	+				-1.4
3,632,306	+				+1.0
3,632,306	+				+0.4
3,632,306	+				+0.1
3,632,306	+				-0.0
3,632,306	+				-1.6
3,632,306	+				+1.1
3,632,306	+				-0.4
3,632,307	-				-0.7
3,632,307	-				-2.8
3,632,307	-				+2.5
3,632,307	-				+0.3
3,632,307	-				+0.3
3,632,307	-				+1.0
3,632,307	-				+1.0
3,632,307	-				-0.1
3,632,307	-				+0.6
3,632,307	-				+1.2
3,632,307	-				-1.4
3,632,307	-				-3.0
3,632,307	-				+0.7
3,632,307	-				-1.1
3,632,307	-				+1.3
3,632,314	+				-0.8
3,632,314	+				+0.1
3,632,315	-				+0.5
3,632,315	-				+0.2
3,632,315	-				-0.7
3,632,373	+				-3.1
3,632,373	+				-2.0
3,632,373	+				+0.4
3,632,374	-				-2.6
3,632,388	+				-0.6
3,632,388	+				-0.7
3,632,388	+				-0.8
3,632,427	+				-0.7
3,632,427	+				-1.6
3,632,428	-				-0.9
3,632,428	-				+1.3
3,632,428	-				-1.8
3,632,428	-				-1.3
3,632,428	-				+0.9
3,632,433	+				-2.8
3,632,433	+				-1.8
3,632,433	+				-0.3
3,632,433	+				-0.1
3,632,434	-				-0.5
3,632,434	-				-1.1
3,632,434	-				+0.8
3,632,434	-				-0.4
3,632,434	-				+2.5
3,632,452	-				+0.8
3,632,468	-				+1.4
3,632,486	+				-0.3
3,632,486	+				+0.8
3,632,486	+				+1.0
3,632,486	+				-0.1
3,632,486	+				-2.1
3,632,486	+				+4.1
3,632,486	+				-0.7
3,632,486	+				+0.7
3,632,487	-				-1.7
3,632,487	-				-0.3
3,632,487	-				-1.5
3,632,487	-				+0.8
3,632,487	-				-2.7
3,632,487	-				-2.3
3,632,487	-				+0.8
3,632,487	-				+1.2
3,632,487	-				+0.2
3,632,487	-				-1.7
3,632,522	+		EFB2_03482	0.12	+3.1
3,632,523	-		EFB2_03482	0.12	+0.4
3,632,544	+		EFB2_03482	0.18	-0.1
3,632,545	-		EFB2_03482	0.18	+0.2
3,632,545	-		EFB2_03482	0.18	+1.3
3,632,545	-		EFB2_03482	0.18	-0.3
3,632,545	-		EFB2_03482	0.18	-1.7
3,632,545	-		EFB2_03482	0.18	-2.3
3,632,545	-		EFB2_03482	0.18	+0.4
3,632,666	+		EFB2_03482	0.47	-0.1
3,632,701	-		EFB2_03482	0.56	+0.3
3,632,726	+		EFB2_03482	0.62	+1.7
3,632,752	+		EFB2_03482	0.68	+1.0
3,632,752	+		EFB2_03482	0.68	-0.8
3,632,753	-		EFB2_03482	0.68	+0.9
3,632,753	-		EFB2_03482	0.68	-2.9
3,632,847	+				-0.1
3,632,847	+				-0.3
3,632,848	-				+0.7
3,632,848	-				-0.0
3,632,871	+				+0.2
3,632,871	+				-1.0
3,632,872	-				-0.6
3,632,872	-				+0.8
3,632,872	-				-0.2
3,632,880	+				+2.4
3,632,880	+				+0.5
3,632,881	-				+1.3
3,632,881	-				-0.3
3,632,901	+				+0.8
3,632,902	-				-2.5
3,632,949	+				-0.7
3,632,949	+				-1.5
3,632,976	+				+0.7
3,632,976	+				-0.9
3,632,990	+				-1.1
3,632,990	+				-0.5
3,632,990	+				+1.5
3,632,991	-				-0.9
3,633,004	+				+0.4
3,633,005	-				+1.4
3,633,024	+				-0.1
3,633,024	+				-1.4
3,633,024	+				-1.6
3,633,024	+				-1.8
3,633,024	+				-1.7
3,633,025	-				-2.2
3,633,025	-				+1.2
3,633,025	-				-0.4
3,633,025	-				-0.1
3,633,025	-				+0.1
3,633,025	-				-0.1
3,633,055	+		EFB2_03483	0.33	+2.4
3,633,055	+		EFB2_03483	0.33	-0.1
3,633,055	+		EFB2_03483	0.33	-0.1
3,633,055	+		EFB2_03483	0.33	+0.8
3,633,056	-		EFB2_03483	0.34	+0.5
3,633,056	-		EFB2_03483	0.34	-3.1
3,633,056	-		EFB2_03483	0.34	-1.1
3,633,056	-		EFB2_03483	0.34	-1.5
3,633,057	+		EFB2_03483	0.36	-1.1
3,633,057	+		EFB2_03483	0.36	+0.7
3,633,057	+		EFB2_03483	0.36	-0.3
3,633,057	+		EFB2_03483	0.36	-0.8
3,633,057	+		EFB2_03483	0.36	-0.1
3,633,057	+		EFB2_03483	0.36	-2.7
3,633,057	+		EFB2_03483	0.36	+1.3
3,633,058	-		EFB2_03483	0.37	+0.7
3,633,058	-		EFB2_03483	0.37	+0.3
3,633,058	-		EFB2_03483	0.37	+1.6
3,633,058	-		EFB2_03483	0.37	+1.1
3,633,058	-		EFB2_03483	0.37	-2.7
3,633,059	+		EFB2_03483	0.38	-2.1
3,633,059	+		EFB2_03483	0.38	-2.9
3,633,059	+		EFB2_03483	0.38	-0.1
3,633,059	+		EFB2_03483	0.38	-1.4
3,633,059	+		EFB2_03483	0.38	+0.8
3,633,059	+		EFB2_03483	0.38	-1.4
3,633,059	+		EFB2_03483	0.38	-0.9
3,633,059	+		EFB2_03483	0.38	+0.1
3,633,059	+		EFB2_03483	0.38	+1.0
3,633,059	+		EFB2_03483	0.38	+0.1
3,633,059	+		EFB2_03483	0.38	+0.2
3,633,060	-		EFB2_03483	0.39	+0.4
3,633,060	-		EFB2_03483	0.39	-1.5
3,633,060	-		EFB2_03483	0.39	+0.1
3,633,060	-		EFB2_03483	0.39	-0.5
3,633,060	-		EFB2_03483	0.39	-0.0
3,633,060	-		EFB2_03483	0.39	+1.1
3,633,060	-		EFB2_03483	0.39	+0.5
3,633,060	-		EFB2_03483	0.39	-3.3
3,633,060	-		EFB2_03483	0.39	+2.1
3,633,060	-		EFB2_03483	0.39	-2.0
3,633,060	-		EFB2_03483	0.39	+0.7
3,633,060	-		EFB2_03483	0.39	-1.3
3,633,060	-		EFB2_03483	0.39	+1.6
3,633,060	-		EFB2_03483	0.39	-1.1
3,633,060	-		EFB2_03483	0.39	-2.1
3,633,060	-		EFB2_03483	0.39	-0.5
3,633,060	-		EFB2_03483	0.39	-0.5
3,633,060	-		EFB2_03483	0.39	-0.4
3,633,060	-		EFB2_03483	0.39	+2.1
3,633,060	-		EFB2_03483	0.39	-0.3
3,633,060	-		EFB2_03483	0.39	-0.9
3,633,060	-		EFB2_03483	0.39	-3.1
3,633,066	-		EFB2_03483	0.46	-1.7
3,633,075	+		EFB2_03483	0.56	-2.7
3,633,075	+		EFB2_03483	0.56	-1.9
3,633,075	+		EFB2_03483	0.56	-3.1
3,633,075	+		EFB2_03483	0.56	-1.8
3,633,075	+		EFB2_03483	0.56	+0.4
3,633,076	-		EFB2_03483	0.57	-2.8
3,633,076	-		EFB2_03483	0.57	-1.3
3,633,076	-		EFB2_03483	0.57	-3.1
3,633,076	-		EFB2_03483	0.57	+0.4
3,633,076	-		EFB2_03483	0.57	+1.8
3,633,076	-		EFB2_03483	0.57	+0.5
3,633,076	-		EFB2_03483	0.57	-1.5
3,633,076	-		EFB2_03483	0.57	-2.0
3,633,076	-		EFB2_03483	0.57	-0.0
3,633,076	-		EFB2_03483	0.57	-2.2
3,633,092	+		EFB2_03483	0.74	-0.9
3,633,092	+		EFB2_03483	0.74	+1.4
3,633,092	+		EFB2_03483	0.74	+0.1
3,633,092	+		EFB2_03483	0.74	-1.9
3,633,092	+		EFB2_03483	0.74	-1.7
3,633,092	+		EFB2_03483	0.74	-0.7
3,633,092	+		EFB2_03483	0.74	+0.5
3,633,092	+		EFB2_03483	0.74	-1.3
3,633,092	+		EFB2_03483	0.74	+1.3
3,633,092	+		EFB2_03483	0.74	+1.3
3,633,093	-		EFB2_03483	0.76	+4.1
3,633,093	-		EFB2_03483	0.76	-0.9
3,633,093	-		EFB2_03483	0.76	+2.2
3,633,093	-		EFB2_03483	0.76	-0.2
3,633,093	-		EFB2_03483	0.76	-1.1
3,633,094	+		EFB2_03483	0.77	+0.1
3,633,094	+		EFB2_03483	0.77	-0.9
3,633,094	+		EFB2_03483	0.77	-0.0
3,633,094	+		EFB2_03483	0.77	+1.0
3,633,094	+		EFB2_03483	0.77	+0.3
3,633,094	+		EFB2_03483	0.77	+0.3
3,633,094	+		EFB2_03483	0.77	-0.1
3,633,094	+		EFB2_03483	0.77	-0.1
3,633,094	+		EFB2_03483	0.77	+0.1
3,633,095	-		EFB2_03483	0.78	-0.7
3,633,095	-		EFB2_03483	0.78	+0.2
3,633,095	-		EFB2_03483	0.78	+1.1
3,633,095	-		EFB2_03483	0.78	+0.0
3,633,095	-		EFB2_03483	0.78	-0.5
3,633,095	-		EFB2_03483	0.78	-1.1
3,633,095	-		EFB2_03483	0.78	-0.2
3,633,095	-		EFB2_03483	0.78	+0.2
3,633,095	-		EFB2_03483	0.78	-3.3
3,633,095	-		EFB2_03483	0.78	-0.3
3,633,095	-		EFB2_03483	0.78	+0.1
3,633,125	+				+1.0
3,633,125	+				-1.2
3,633,126	-				-0.2
3,633,126	-				-2.3
3,633,145	-				-0.6
3,633,178	+				-0.7
3,633,179	-				-1.5
3,633,179	-				+1.2
3,633,187	-				+1.9
3,633,187	-				+0.7
3,633,193	+				-1.3
3,633,204	+				+0.3
3,633,204	+				-1.1
3,633,204	+				-0.8
3,633,204	+				-1.9
3,633,204	+				-0.1
3,633,204	+				-1.1
3,633,204	+				-1.3
3,633,204	+				-1.4
3,633,204	+				+3.2
3,633,204	+				+0.5
3,633,204	+				+0.6
3,633,205	-				-0.3
3,633,205	-				-1.1
3,633,205	-				+1.0
3,633,205	-				+0.7
3,633,205	-				+0.8
3,633,205	-				+0.3
3,633,205	-				-0.4
3,633,205	-				+1.2
3,633,205	-				-0.3
3,633,205	-				+0.1
3,633,208	+				+0.2
3,633,208	+				+1.8
3,633,208	+				+0.4
3,633,208	+				-3.3
3,633,208	+				-1.3
3,633,208	+				-0.3
3,633,208	+				-0.7
3,633,208	+				+0.2
3,633,208	+				-0.2
3,633,208	+				+0.5
3,633,208	+				+0.1
3,633,208	+				+0.1
3,633,208	+				+0.4
3,633,208	+				+0.1
3,633,208	+				+0.8
3,633,208	+				-0.8
3,633,208	+				-0.0
3,633,208	+				+0.8
3,633,208	+				-1.8
3,633,208	+				-2.3
3,633,208	+				+0.5
3,633,208	+				-1.6
3,633,208	+				+0.1
3,633,208	+				+0.5
3,633,208	+				-1.5
3,633,208	+				+1.5
3,633,208	+				+0.9
3,633,208	+				+0.5
3,633,209	-				-1.0
3,633,209	-				+1.3
3,633,209	-				+2.4
3,633,209	-				-1.8
3,633,209	-				+0.1
3,633,209	-				-0.3
3,633,209	-				-1.4
3,633,209	-				+1.5
3,633,209	-				-1.7
3,633,209	-				-1.8
3,633,209	-				-1.5
3,633,209	-				-0.1
3,633,209	-				-1.7
3,633,209	-				+1.5
3,633,209	-				-2.2
3,633,209	-				+0.6
3,633,209	-				+0.2
3,633,209	-				-3.5
3,633,209	-				+1.1
3,633,209	-				-1.8
3,633,209	-				+0.2
3,633,209	-				+1.1
3,633,209	-				+0.8
3,633,209	-				+1.7
3,633,210	+				+1.6
3,633,210	+				-0.2
3,633,210	+				-0.8
3,633,210	+				-2.5
3,633,210	+				-1.5
3,633,210	+				-1.9
3,633,210	+				-2.2
3,633,210	+				+1.1
3,633,210	+				-1.3
3,633,210	+				-0.3
3,633,210	+				+0.3
3,633,210	+				+2.1
3,633,210	+				-0.9
3,633,210	+				+1.4
3,633,210	+				-2.5
3,633,211	-				-0.5
3,633,211	-				+3.1
3,633,211	-				-2.0
3,633,211	-				-1.4
3,633,211	-				+1.0
3,633,211	-				+0.6
3,633,211	-				-0.5
3,633,211	-				+0.3
3,633,211	-				-0.4
3,633,211	-				-2.6
3,633,211	-				-0.0
3,633,211	-				+1.6
3,633,211	-				-2.1
3,633,211	-				+0.4
3,633,211	-				-0.4
3,633,211	-				-1.3
3,633,211	-				+0.6
3,633,211	-				+2.5
3,633,211	-				-0.3
3,633,211	-				+0.7
3,633,237	+				-3.7
3,633,237	+				+0.3
3,633,237	+				-2.5
3,633,237	+				+0.1
3,633,237	+				+1.3
3,633,237	+				-0.3
3,633,237	+				-2.0
3,633,237	+				+2.1
3,633,237	+				+0.6
3,633,237	+				-3.2
3,633,237	+				-1.5
3,633,237	+				-1.3
3,633,237	+				+0.8
3,633,238	-				+0.7
3,633,238	-				+0.5
3,633,238	-				-3.3
3,633,238	-				+1.1
3,633,238	-				-0.9
3,633,238	-				-0.1
3,633,238	-				+0.7
3,633,238	-				-2.9
3,633,238	-				-0.2
3,633,238	-				-2.1
3,633,238	-				-0.6
3,633,238	-				-1.3
3,633,238	-				+1.7
3,633,238	-				-0.4
3,633,238	-				-2.2
3,633,238	-				+0.5
3,633,238	-				-1.6
3,633,238	-				-1.4
3,633,238	-				+1.1
3,633,238	-				-0.0
3,633,241	+				+0.1
3,633,241	+				-0.1
3,633,242	-				+1.1
3,633,242	-				-0.9
3,633,242	-				-1.3
3,633,336	+		EFB2_03484	0.23	-3.1
3,633,336	+		EFB2_03484	0.23	-2.0
3,633,336	+		EFB2_03484	0.23	-0.6
3,633,336	+		EFB2_03484	0.23	-2.9
3,633,336	+		EFB2_03484	0.23	+0.0
3,633,336	+		EFB2_03484	0.23	-0.5
3,633,336	+		EFB2_03484	0.23	-0.7
3,633,336	+		EFB2_03484	0.23	-1.1
3,633,336	+		EFB2_03484	0.23	+0.8
3,633,337	-		EFB2_03484	0.23	-0.5
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